Makefile

# Copyright (C) 2018-2019 Andrew D. Smith
#
# Authors: Andrew D. Smith
#
# This file is part of ABISMAL.
#
# ABISMAL is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# ABISMAL is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
# or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public
# License for more details.
#
SMITHLAB_CPP=$(abspath $(dir $(MAKEFILE_LIST)))/src/smithlab_cpp

ifeq (,$(wildcard $(SMITHLAB_CPP)/Makefile))
$(error src/smithlab_cpp does not have a Makefile. \
	      Did you use --recursive when running git clone?)
endif


SRC_ROOT=$(shell pwd)
all:
	@make -C $(SMITHLAB_CPP) HAVE_HTSLIB=1 all
	@make -C src OPT=1

install:
	@make -C src SRC_ROOT=$(SRC_ROOT) OPT=1 HAVE_HTSLIB=1 install

clean:
	@make -C src clean
.PHONY: clean