New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Error I preprocess quantile #250

Open

simonjuleseric2 opened this issue Jul 27, 2023 · 0 comments

simonjuleseric2 commented Jul 27, 2023 •

edited

Loading

Using this workflow: https://nbis-workshop-epigenomics.readthedocs.io/en/latest/content/tutorials/methylationArray/Array_Tutorial.html#load-datasets
for testing I get the following error at the normalization step using preprocessQuantile:

Error in normalize.quantiles(mat[Index2, ]): ERROR; return code from pthread_create() is 22

Traceback:

preprocessQuantile(rgSet)
.qnormStratified(mat = U, auIndex = auIndex, xIndex = xIndex,
. yIndex = yIndex, sex = sex, probeType = probeType, regionType = regionType)
.qnormStratifiedHelper(mat = mat[auIndex, ], probeType = probeType[auIndex],
. regionType = regionType[auIndex])
normalize.quantiles(mat[Index2, ])

I also get the same error with my own data

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment