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conda_env.yml
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conda_env.yml
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name: snakepipes_fastqc-multiqc
channels:
- bioconda
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- aioeasywebdav=2.4.0=pyha770c72_0
- aiohttp=3.8.4=py311h2582759_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- alsa-lib=1.2.8=h166bdaf_0
- amply=0.1.5=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=23.1.0=pyh71513ae_1
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bcrypt=3.2.2=py311hd4cff14_1
- boltons=23.0.0=pyhd8ed1ab_0
- boto3=1.26.129=pyhd8ed1ab_0
- botocore=1.29.129=pyhd8ed1ab_0
- brotli=1.0.9=h166bdaf_8
- brotli-bin=1.0.9=h166bdaf_8
- brotlipy=0.7.0=py311hd4cff14_1005
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2023.5.7=hbcca054_0
- cachetools=5.3.0=pyhd8ed1ab_0
- cairo=1.16.0=h35add3b_1015
- certifi=2023.5.7=pyhd8ed1ab_0
- cffi=1.15.1=py311h409f033_3
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- click=8.1.3=unix_pyhd8ed1ab_2
- coin-or-cbc=2.10.10=h9002f0b_0
- coin-or-cgl=0.60.7=h516709c_0
- coin-or-clp=1.17.8=h1ee7a9c_0
- coin-or-osi=0.108.8=ha2443b9_0
- coin-or-utils=2.11.9=hee58242_0
- coincbc=2.10.10=0_metapackage
- colorama=0.4.6=pyhd8ed1ab_0
- coloredlogs=15.0.1=pyhd8ed1ab_3
- colormath=3.0.0=py_2
- conda=23.3.1=py311h38be061_0
- conda-package-handling=2.0.2=pyh38be061_0
- conda-package-streaming=0.7.0=pyhd8ed1ab_1
- configargparse=1.5.3=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- contourpy=1.0.7=py311ha3edf6b_0
- cryptography=40.0.2=py311h9b4c7bb_0
- curl=8.0.1=h588be90_0
- cycler=0.11.0=pyhd8ed1ab_0
- datrie=0.8.2=py311hd4cff14_6
- defusedxml=0.7.1=pyhd8ed1ab_0
- docutils=0.19=py311h38be061_1
- dpath=2.1.5=py311h38be061_0
- dropbox=11.36.0=pyhd8ed1ab_0
- exa=0.10.1=habb4d0f_0
- exceptiongroup=1.1.1=pyhd8ed1ab_0
- expat=2.5.0=hcb278e6_1
- fastqc=0.12.1=hdfd78af_0
- filechunkio=1.8=py_2
- filelock=3.12.0=pyhd8ed1ab_0
- fmt=9.1.0=h924138e_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.39.3=py311h2582759_0
- freetype=2.12.1=hca18f0e_1
- frozenlist=1.3.3=py311hd4cff14_0
- ftputil=5.0.4=pyhd8ed1ab_0
- future=0.18.3=pyhd8ed1ab_0
- gettext=0.21.1=h27087fc_0
- giflib=5.2.1=h0b41bf4_3
- git=2.40.1=pl5321h86e50cf_0
- gitdb=4.0.10=pyhd8ed1ab_0
- gitpython=3.1.31=pyhd8ed1ab_0
- google-api-core=2.11.0=pyhd8ed1ab_0
- google-api-python-client=2.86.0=pyhd8ed1ab_0
- google-auth=2.17.3=pyh1a96a4e_0
- google-auth-httplib2=0.1.0=pyhd8ed1ab_1
- google-cloud-core=2.3.2=pyhd8ed1ab_0
- google-cloud-storage=2.9.0=pyh1a96a4e_0
- google-crc32c=1.1.2=py311h98db957_4
- google-resumable-media=2.5.0=pyhd8ed1ab_0
- googleapis-common-protos=1.57.1=pyhd8ed1ab_0
- graphite2=1.3.13=h58526e2_1001
- grpcio=1.54.1=py311hcafe171_0
- harfbuzz=6.0.0=h3ff4399_1
- httplib2=0.22.0=pyhd8ed1ab_0
- humanfriendly=10.0=py311h38be061_4
- icu=72.1=hcb278e6_0
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=6.6.0=pyha770c72_0
- importlib_resources=5.12.0=pyhd8ed1ab_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- jmespath=1.0.1=pyhd8ed1ab_0
- jsonpatch=1.32=pyhd8ed1ab_0
- jsonpointer=2.0=py_0
- jsonschema=4.17.3=pyhd8ed1ab_0
- jupyter_core=5.3.0=py311h38be061_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py311h4dd048b_1
- krb5=1.20.1=h81ceb04_0
- lcms2=2.15=haa2dc70_1
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libabseil=20230125.0=cxx17_hcb278e6_1
- libarchive=3.6.2=h3d51595_0
- libblas=3.9.0=16_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libcblas=3.9.0=16_linux64_openblas
- libcrc32c=1.1.2=h9c3ff4c_0
- libcups=2.3.3=h36d4200_3
- libcurl=8.0.1=h588be90_0
- libdeflate=1.18=h0b41bf4_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libglib=2.76.2=hebfc3b9_0
- libgomp=12.2.0=h65d4601_19
- libgrpc=1.54.1=hcf146ea_0
- libiconv=1.17=h166bdaf_0
- libjpeg-turbo=2.1.5.1=h0b41bf4_0
- liblapack=3.9.0=16_linux64_openblas
- liblapacke=3.9.0=16_linux64_openblas
- libmamba=1.4.2=hcea66bb_0
- libmambapy=1.4.2=py311h1f88262_0
- libnghttp2=1.52.0=h61bc06f_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.39=h753d276_0
- libprotobuf=3.21.12=h3eb15da_0
- libsodium=1.0.18=h36c2ea0_1
- libsolv=0.7.23=h3eb15da_0
- libsqlite=3.40.0=h753d276_1
- libssh2=1.10.0=hf14f497_3
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.5.0=ha587672_6
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.3.0=h0b41bf4_0
- libxcb=1.13=h7f98852_1004
- libxml2=2.10.4=hfdac1af_0
- libzlib=1.2.13=h166bdaf_4
- logmuse=0.2.6=pyh8c360ce_0
- lz4-c=1.9.4=hcb278e6_0
- lzo=2.10=h516909a_1000
- lzstring=1.0.4=py_1001
- mamba=1.4.2=py311h3072747_0
- markdown=3.4.3=pyhd8ed1ab_0
- markdown-it-py=2.2.0=pyhd8ed1ab_0
- markupsafe=2.1.2=py311h2582759_0
- matplotlib-base=3.7.1=py311h8597a09_0
- mdurl=0.1.0=pyhd8ed1ab_0
- multidict=6.0.4=py311h2582759_0
- multiqc=1.14=pyhdfd78af_0
- munkres=1.0.7=py_1
- nbformat=5.8.0=pyhd8ed1ab_0
- ncurses=6.3=h27087fc_1
- networkx=3.1=pyhd8ed1ab_0
- numpy=1.24.3=py311h64a7726_0
- oauth2client=4.1.3=py_0
- openjdk=17.0.3=h4335b31_6
- openjpeg=2.5.0=hfec8fc6_2
- openssl=3.1.0=hd590300_3
- packaging=23.1=pyhd8ed1ab_0
- pandas=2.0.1=py311h320fe9a_1
- paramiko=3.1.0=pyhd8ed1ab_0
- pcre2=10.40=hc3806b6_0
- peppy=0.35.5=pyhd8ed1ab_0
- perl=5.32.1=2_h7f98852_perl5
- pillow=9.5.0=py311h573f0d3_0
- pip=23.1.2=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- plac=1.3.5=pyhd8ed1ab_0
- platformdirs=3.5.0=pyhd8ed1ab_0
- pluggy=1.0.0=pyhd8ed1ab_5
- ply=3.11=py_1
- prettytable=3.7.0=pyhd8ed1ab_0
- protobuf=4.21.12=py311hcafe171_0
- psutil=5.9.5=py311h2582759_0
- pthread-stubs=0.4=h36c2ea0_1001
- pulp=2.7.0=py311h38be061_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pybind11-abi=4=hd8ed1ab_3
- pycosat=0.6.4=py311hd4cff14_1
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.15.1=pyhd8ed1ab_0
- pynacl=1.5.0=py311hd4cff14_2
- pyopenssl=23.1.1=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyrsistent=0.19.3=py311h2582759_0
- pysftp=0.2.9=py_1
- pysocks=1.7.1=pyha2e5f31_6
- pytest=7.3.1=pyhd8ed1ab_0
- python=3.11.3=h2755cc3_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.16.3=pyhd8ed1ab_0
- python-irodsclient=1.1.6=pyhd8ed1ab_0
- python-tzdata=2023.3=pyhd8ed1ab_0
- python_abi=3.11=3_cp311
- pytz=2023.3=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyyaml=6.0=py311hd4cff14_5
- re2=2023.02.02=hcb278e6_0
- readline=8.2=h8228510_1
- reproc=14.2.4=h0b41bf4_0
- reproc-cpp=14.2.4=hcb278e6_0
- requests=2.29.0=pyhd8ed1ab_0
- reretry=0.11.8=pyhd8ed1ab_0
- rich=13.3.5=pyhd8ed1ab_0
- rich-click=1.6.1=pyhd8ed1ab_0
- rsa=4.9=pyhd8ed1ab_0
- ruamel.yaml=0.17.24=py311h459d7ec_0
- ruamel.yaml.clib=0.2.7=py311h2582759_1
- s3transfer=0.6.1=pyhd8ed1ab_0
- setuptools=67.7.2=pyhd8ed1ab_0
- setuptools-scm=7.1.0=pyhd8ed1ab_0
- simplejson=3.19.1=py311h2582759_0
- six=1.16.0=pyh6c4a22f_0
- slacker=0.14.0=py_0
- smart_open=6.3.0=pyhd8ed1ab_1
- smmap=3.0.5=pyh44b312d_0
- snakemake=7.25.3=hdfd78af_0
- snakemake-minimal=7.25.3=pyhdfd78af_0
- spectra=0.0.11=py_1
- stone=3.3.1=pyhd8ed1ab_0
- stopit=1.1.2=py_0
- tabulate=0.9.0=pyhd8ed1ab_1
- throttler=1.2.1=pyhd8ed1ab_0
- tk=8.6.12=h27826a3_0
- tomli=2.0.1=pyhd8ed1ab_0
- toolz=0.12.0=pyhd8ed1ab_0
- toposort=1.10=pyhd8ed1ab_0
- tqdm=4.65.0=pyhd8ed1ab_1
- traitlets=5.9.0=pyhd8ed1ab_0
- typing-extensions=4.5.0=hd8ed1ab_0
- typing_extensions=4.5.0=pyha770c72_0
- tzdata=2023c=h71feb2d_0
- ubiquerg=0.6.2=pyhd8ed1ab_0
- uritemplate=4.1.1=pyhd8ed1ab_0
- urllib3=1.26.15=pyhd8ed1ab_0
- veracitools=0.1.3=py_0
- wcwidth=0.2.6=pyhd8ed1ab_0
- wheel=0.40.0=pyhd8ed1ab_0
- wrapt=1.15.0=py311h2582759_0
- xorg-fixesproto=5.0=h7f98852_1002
- xorg-inputproto=2.3.2=h7f98852_1002
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.8.4=h0b41bf4_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxfixes=5.0.3=h7f98852_1004
- xorg-libxi=1.7.10=h7f98852_0
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxtst=1.2.3=h7f98852_1002
- xorg-recordproto=1.14.2=h7f98852_1002
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- yaml-cpp=0.7.0=h27087fc_2
- yarl=1.9.1=py311h459d7ec_0
- yte=1.5.1=py311h38be061_1
- zipp=3.15.0=pyhd8ed1ab_0
- zlib=1.2.13=h166bdaf_4
- zstandard=0.19.0=py311hbe0fcd7_1
- zstd=1.5.2=h3eb15da_6