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  1. Fudenberg-Research-Group/fastaFRiP Fudenberg-Research-Group/fastaFRiP Public

    pipeline for calculating FRiP from fasta (or bed + fasta)

    Python 2

  2. chromoscores chromoscores Public

    Jupyter Notebook

  3. synaptic_nucleotide_kinetics synaptic_nucleotide_kinetics Public

    Python

  4. Fudenberg-Research-Group/dynamic_extrusion_boundaries Fudenberg-Research-Group/dynamic_extrusion_boundaries Public

    Jupyter Notebook 2 4

  5. Fudenberg-Research-Group/Loop_extrusion_velocity_chromosome Fudenberg-Research-Group/Loop_extrusion_velocity_chromosome Public

    Jupyter Notebook

  6. open2c/looplib open2c/looplib Public

    A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.

    Cython 10 6