SSH&DataManagement.md

login via ssh

You need to have an account in the server first. Contact Chen.

You can login the server via ssh by the following command line in your terminal:

ssh 10.128.243.62

Alternatively, you can configure the ssh in your local file ~/.ssh/config (you may need to make the ~/.ssh folder first), and add the following lines:

Host labserver
    User YourUserName
    HostName 10.128.243.62
    ServerAliveInterval 5

Then you can login via the following command line:

ssh labserver

Login remotely

The server is inside University's LAN, so you need to be in the unveristy's netweek physically or via the University's VPN

Once you are in the VPN, you can login via ssh as above section.

Using MobaXterm

For windows user, mobaxterm is a useful for terminal managment

please enter port 22 and your specific account name to login

File system(important!!!)

• /home/YOU: home directory ,which is SSD drive 2TB in total . please DONOT save sequencing file and your result under your home, its huge !! you may keep software (conda environment), intermediate data, or analyses here.
• Our main Storage disk (raid) is mounted on /media/zenglab now is 32TB in total ..(To be expanded) which contains:
  • /media/zenglab/test/ you may keep test data files here
  • /media/zenglab/data/ you may keep raw or large data files here
  • /media/zenglab/result/ you may keep final output/analyze result here
  • /media/zenglab/script/ you may keep your software repo or scripts here
  • /media/zenglab/miniconda3/ the public conda used for pipeline/snakemake repeat you may create directory and use them as follows: media/zenglab/TYPE/YOU

future management plan

• we may transfer existing file from /media/zenglab/data/ to user's own media/zenglab/data/YOU data and for previous rawdata in broad , we can create zenghu directory
• /ssd/research: for shared research projects, we will keep them here