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.nextflow.log
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Sep-04 12:34:35.321 [main] DEBUG nextflow.cli.Launcher - $> nextflow run ./main.nf --workflow build_atlas -profile cluster -w /data/scratch/marteau/nf-work-dir/crc-atlas/work -params-file params_build_atlas.yaml -resume
Sep-04 12:34:35.510 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 23.04.0
Sep-04 12:34:35.527 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/home/marteau/.nextflow/plugins; core-plugins: [email protected],[email protected],[email protected],[email protected],[email protected],[email protected],[email protected],[email protected]
Sep-04 12:34:35.536 [main] INFO org.pf4j.DefaultPluginStatusProvider - Enabled plugins: []
Sep-04 12:34:35.536 [main] INFO org.pf4j.DefaultPluginStatusProvider - Disabled plugins: []
Sep-04 12:34:35.538 [main] INFO org.pf4j.DefaultPluginManager - PF4J version 3.4.1 in 'deployment' mode
Sep-04 12:34:35.551 [main] INFO org.pf4j.AbstractPluginManager - No plugins
Sep-04 12:34:35.563 [main] DEBUG nextflow.config.ConfigBuilder - Found config home: /home/marteau/.nextflow/config
Sep-04 12:34:35.564 [main] DEBUG nextflow.config.ConfigBuilder - Found config local: /home/marteau/projects/2024/crc-atlas/nextflow.config
Sep-04 12:34:35.564 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/marteau/.nextflow/config
Sep-04 12:34:35.564 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/marteau/projects/2024/crc-atlas/nextflow.config
Sep-04 12:34:35.608 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `cluster`
Sep-04 12:34:36.101 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `cluster`
Sep-04 12:34:36.475 [main] DEBUG nextflow.config.ConfigBuilder - Available config profiles: [icbi, standard, cluster]
Sep-04 12:34:36.504 [main] DEBUG nextflow.cli.CmdRun - Applied DSL=2 by global default
Sep-04 12:34:36.518 [main] INFO nextflow.cli.CmdRun - Launching `./main.nf` [focused_gauss] DSL2 - revision: 325ddcc16b
Sep-04 12:34:36.518 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[]
Sep-04 12:34:36.518 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins resolved requirement=[]
Sep-04 12:34:36.534 [main] DEBUG nextflow.secret.LocalSecretsProvider - Secrets store: /home/marteau/.nextflow/secrets/store.json
Sep-04 12:34:36.537 [main] DEBUG nextflow.secret.SecretsLoader - Discovered secrets providers: [nextflow.secret.LocalSecretsProvider@5b88b8e] - activable => nextflow.secret.LocalSecretsProvider@5b88b8e
Sep-04 12:34:36.588 [main] DEBUG nextflow.Session - Session UUID: 292f02c9-0aa0-4b04-81cc-7cb676985ca3
Sep-04 12:34:36.588 [main] DEBUG nextflow.Session - Run name: focused_gauss
Sep-04 12:34:36.589 [main] DEBUG nextflow.Session - Executor pool size: 144
Sep-04 12:34:36.597 [main] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'FileTransfer' minSize=10; maxSize=432; workQueue=LinkedBlockingQueue[10000]; allowCoreThreadTimeout=false
Sep-04 12:34:36.629 [main] DEBUG nextflow.cli.CmdRun -
Version: 23.04.0 build 5857
Created: 01-04-2023 21:09 UTC (23:09 CEST)
System: Linux 5.14.0-362.24.1.el9_3.0.1.x86_64
Runtime: Groovy 3.0.16 on OpenJDK 64-Bit Server VM 17.0.11+9-LTS
Encoding: UTF-8 (UTF-8)
Process: 4061966@leto [10.1.0.100]
CPUs: 144 - Mem: 3 TB (1.3 TB) - Swap: 16 GB (383.6 MB)
Sep-04 12:34:36.754 [main] DEBUG nextflow.Session - Work-dir: /data/scratch/marteau/nf-work-dir/crc-atlas/work [ceph]
Sep-04 12:34:36.770 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[]
Sep-04 12:34:36.778 [main] DEBUG nextflow.Session - Observer factory: DefaultObserverFactory
Sep-04 12:34:36.799 [main] DEBUG nextflow.cache.CacheFactory - Using Nextflow cache factory: nextflow.cache.DefaultCacheFactory
Sep-04 12:34:36.808 [main] DEBUG nextflow.util.CustomThreadPool - Creating default thread pool > poolSize: 145; maxThreads: 1000
Sep-04 12:34:36.919 [main] DEBUG nextflow.Session - Session start
Sep-04 12:34:37.017 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution
Sep-04 12:34:39.284 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Bian_2018_Science
Sep-04 12:34:39.288 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Bian_2018_Science
Sep-04 12:34:39.292 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.292 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.301 [main] DEBUG nextflow.executor.Executor - [warm up] executor > slurm
Sep-04 12:34:39.305 [main] DEBUG n.processor.TaskPollingMonitor - Creating task monitor for executor 'slurm' > capacity: 600; pollInterval: 5s; dumpInterval: 5m
Sep-04 12:34:39.307 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Sep-04 12:34:39.364 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Borras_2023_Cell_Discov
Sep-04 12:34:39.365 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Borras_2023_Cell_Discov
Sep-04 12:34:39.366 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.367 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.375 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Burclaff_2022_Cell_Mol_Gastroenterol_Hepatol
Sep-04 12:34:39.375 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Burclaff_2022_Cell_Mol_Gastroenterol_Hepatol
Sep-04 12:34:39.376 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.376 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.382 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Che_2021_Cell_Discov
Sep-04 12:34:39.382 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Che_2021_Cell_Discov
Sep-04 12:34:39.383 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Che_2021_Cell_Discov
Sep-04 12:34:39.383 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Che_2021_Cell_Discov
Sep-04 12:34:39.384 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.384 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.389 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Chen_2021_Cell
Sep-04 12:34:39.390 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Chen_2021_Cell
Sep-04 12:34:39.390 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Chen_2021_Cell
Sep-04 12:34:39.390 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Chen_2021_Cell
Sep-04 12:34:39.391 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.391 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.396 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Chen_2024_Cancer_Cell
Sep-04 12:34:39.397 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Chen_2024_Cancer_Cell
Sep-04 12:34:39.397 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Chen_2024_Cancer_Cell
Sep-04 12:34:39.398 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Chen_2024_Cancer_Cell
Sep-04 12:34:39.399 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.399 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.404 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Conde_2022_Science
Sep-04 12:34:39.404 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Conde_2022_Science
Sep-04 12:34:39.404 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Conde_2022_Science
Sep-04 12:34:39.405 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Conde_2022_Science
Sep-04 12:34:39.405 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.405 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.411 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:DeVries_2023_Nature
Sep-04 12:34:39.411 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:DeVries_2023_Nature
Sep-04 12:34:39.412 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.412 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.417 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Elmentaite_2021_Nature
Sep-04 12:34:39.418 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Elmentaite_2021_Nature.*|.*HTAPP_HTAN.*|.*GarridoTrigo.*` matches process build_atlas:Load_datasets:Elmentaite_2021_Nature
Sep-04 12:34:39.418 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Elmentaite_2021_Nature.*|.*HTAPP_HTAN.*|.*GarridoTrigo.*` matches process build_atlas:Load_datasets:Elmentaite_2021_Nature
Sep-04 12:34:39.418 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Elmentaite_2021_Nature
Sep-04 12:34:39.419 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.419 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.424 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:GarridoTrigo_2023_Nat_Commun
Sep-04 12:34:39.425 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Elmentaite_2021_Nature.*|.*HTAPP_HTAN.*|.*GarridoTrigo.*` matches process build_atlas:Load_datasets:GarridoTrigo_2023_Nat_Commun
Sep-04 12:34:39.425 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Elmentaite_2021_Nature.*|.*HTAPP_HTAN.*|.*GarridoTrigo.*` matches process build_atlas:Load_datasets:GarridoTrigo_2023_Nat_Commun
Sep-04 12:34:39.425 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:GarridoTrigo_2023_Nat_Commun
Sep-04 12:34:39.426 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.426 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.431 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Giguelay_2022_Theranostics
Sep-04 12:34:39.431 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Giguelay_2022_Theranostics
Sep-04 12:34:39.432 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.432 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.437 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Guo_2022_JCI_Insight
Sep-04 12:34:39.437 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Guo_2022_JCI_Insight
Sep-04 12:34:39.437 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Guo_2022_JCI_Insight
Sep-04 12:34:39.437 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Guo_2022_JCI_Insight
Sep-04 12:34:39.438 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.438 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.443 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Han_2020_Nature
Sep-04 12:34:39.443 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Han_2020_Nature
Sep-04 12:34:39.444 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Han_2020_Nature
Sep-04 12:34:39.444 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Han_2020_Nature
Sep-04 12:34:39.444 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.444 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.449 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Harmon_2023_Nat_Cancer
Sep-04 12:34:39.449 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Harmon_2023_Nat_Cancer
Sep-04 12:34:39.450 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.450 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.454 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:He_2020_Genome_Biol
Sep-04 12:34:39.454 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:He_2020_Genome_Biol
Sep-04 12:34:39.455 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.455 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.461 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Huang_2024_Nat_Cancer
Sep-04 12:34:39.461 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Huang_2024_Nat_Cancer
Sep-04 12:34:39.462 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.462 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.470 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:James_2020_Nat_Immunol
Sep-04 12:34:39.470 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:James_2020_Nat_Immunol
Sep-04 12:34:39.470 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:James_2020_Nat_Immunol
Sep-04 12:34:39.470 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:James_2020_Nat_Immunol
Sep-04 12:34:39.471 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.471 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.474 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Ji_2024_Cancer_Lett
Sep-04 12:34:39.475 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Ji_2024_Cancer_Lett
Sep-04 12:34:39.475 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Ji_2024_Cancer_Lett
Sep-04 12:34:39.475 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Ji_2024_Cancer_Lett
Sep-04 12:34:39.475 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.475 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.479 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Ji_2024_PLoS_Genet
Sep-04 12:34:39.479 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Ji_2024_PLoS_Genet
Sep-04 12:34:39.480 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.480 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.483 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Joanito_2022_Nat_Genet
Sep-04 12:34:39.484 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Joanito_2022_Nat_Genet
Sep-04 12:34:39.484 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.484 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.488 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Khaliq_2022_Genome_Biol
Sep-04 12:34:39.489 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Khaliq_2022_Genome_Biol
Sep-04 12:34:39.489 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.489 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.492 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Kong_2023_Immunity
Sep-04 12:34:39.493 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Kong_2023_Immunity
Sep-04 12:34:39.493 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.493 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.497 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Lee_2020_Nat_Genet
Sep-04 12:34:39.497 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Lee_2020_Nat_Genet
Sep-04 12:34:39.497 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Lee_2020_Nat_Genet
Sep-04 12:34:39.497 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Lee_2020_Nat_Genet
Sep-04 12:34:39.498 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.498 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.502 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Li_2017_Nat_Genet
Sep-04 12:34:39.502 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Li_2017_Nat_Genet
Sep-04 12:34:39.502 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.502 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.506 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Li_2023_Cancer_Cell
Sep-04 12:34:39.507 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Li_2023_Cancer_Cell
Sep-04 12:34:39.507 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.507 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.512 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Liu_2022_Cancer_Cell
Sep-04 12:34:39.512 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Liu_2022_Cancer_Cell
Sep-04 12:34:39.513 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.513 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.517 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Liu_2024_Cancer_Res
Sep-04 12:34:39.517 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Liu_2024_Cancer_Res
Sep-04 12:34:39.518 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.518 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.523 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Masuda_2022_JCI_Insight
Sep-04 12:34:39.523 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Masuda_2022_JCI_Insight
Sep-04 12:34:39.524 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.524 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.528 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Mazzurana_2021_Cell_Res
Sep-04 12:34:39.528 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Mazzurana_2021_Cell_Res
Sep-04 12:34:39.529 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.529 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.538 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:MUI_Innsbruck_AbSeq
Sep-04 12:34:39.538 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:MUI_Innsbruck_AbSeq
Sep-04 12:34:39.538 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:MUI_Innsbruck_AbSeq
Sep-04 12:34:39.538 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:MUI_Innsbruck_AbSeq
Sep-04 12:34:39.539 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.539 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.549 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:MUI_Innsbruck
Sep-04 12:34:39.549 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:MUI_Innsbruck
Sep-04 12:34:39.550 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:MUI_Innsbruck
Sep-04 12:34:39.550 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:MUI_Innsbruck
Sep-04 12:34:39.550 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.550 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.555 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Parikh_2019_Nature
Sep-04 12:34:39.555 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Parikh_2019_Nature
Sep-04 12:34:39.556 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.556 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.560 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Pelka_2021_Cell
Sep-04 12:34:39.561 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Pelka_2021_Cell
Sep-04 12:34:39.561 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Pelka_2021_Cell
Sep-04 12:34:39.561 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Pelka_2021_Cell
Sep-04 12:34:39.561 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.561 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.566 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:HTAPP_HTAN
Sep-04 12:34:39.567 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Elmentaite_2021_Nature.*|.*HTAPP_HTAN.*|.*GarridoTrigo.*` matches process build_atlas:Load_datasets:HTAPP_HTAN
Sep-04 12:34:39.567 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Elmentaite_2021_Nature.*|.*HTAPP_HTAN.*|.*GarridoTrigo.*` matches process build_atlas:Load_datasets:HTAPP_HTAN
Sep-04 12:34:39.567 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:HTAPP_HTAN
Sep-04 12:34:39.567 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.567 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.572 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Qi_2022_Nat_Commun
Sep-04 12:34:39.572 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Qi_2022_Nat_Commun
Sep-04 12:34:39.572 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.572 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.577 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Qian_2020_Cell_Res
Sep-04 12:34:39.577 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Qian_2020_Cell_Res
Sep-04 12:34:39.578 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.578 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.582 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Qin_2023_Cell_Rep_Med
Sep-04 12:34:39.583 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Qin_2023_Cell_Rep_Med
Sep-04 12:34:39.583 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.583 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.587 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Sathe_2023_Clin_Cancer_Res
Sep-04 12:34:39.588 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Sathe_2023_Clin_Cancer_Res
Sep-04 12:34:39.588 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Che_2021.*|.*Chen_2021.*|.*Chen_2024.*|.*Conde_2022.*|.*Guo_2022.*|.*Sathe_2023.*|.*James_2020.*|.*MUI_Innsbruck.*|.*Ji_2024_Cancer_Lett.*|.*Han_2020.*|.*Lee.*|.*Pelka_2021_Cell.*` matches process build_atlas:Load_datasets:Sathe_2023_Clin_Cancer_Res
Sep-04 12:34:39.588 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Sathe_2023_Clin_Cancer_Res
Sep-04 12:34:39.588 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.588 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.593 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Scheid_2023_J_EXP_Med
Sep-04 12:34:39.593 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Scheid_2023_J_EXP_Med
Sep-04 12:34:39.593 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.593 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.597 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Terekhanova_2023_Nature
Sep-04 12:34:39.598 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Terekhanova_2023_Nature
Sep-04 12:34:39.598 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.598 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.602 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Thomas_2024_Nat_Med
Sep-04 12:34:39.603 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Thomas_2024_Nat_Med
Sep-04 12:34:39.604 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.604 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.608 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Tian_2023_Nat_Med
Sep-04 12:34:39.609 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Tian_2023_Nat_Med
Sep-04 12:34:39.609 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.609 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.613 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Uhlitz_2021_EMBO_Mol_Med
Sep-04 12:34:39.613 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Uhlitz_2021_EMBO_Mol_Med
Sep-04 12:34:39.614 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.614 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.623 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:UZH_Zurich
Sep-04 12:34:39.623 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:UZH_Zurich
Sep-04 12:34:39.624 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.624 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.628 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Wang_2020_J_Exp_Med
Sep-04 12:34:39.629 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Wang_2020_J_Exp_Med
Sep-04 12:34:39.629 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.629 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.633 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Wang_2021_Adv_Sci
Sep-04 12:34:39.634 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Wang_2021_Adv_Sci
Sep-04 12:34:39.634 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.634 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.638 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Wang_2023_Sci_Adv
Sep-04 12:34:39.638 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Wang_2023_Sci_Adv
Sep-04 12:34:39.639 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.639 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.643 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Wu_2022_Cancer_Discov
Sep-04 12:34:39.643 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Wu_2022_Cancer_Discov
Sep-04 12:34:39.644 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.644 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.647 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Wu_2024_Cell
Sep-04 12:34:39.647 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Wu_2024_Cell
Sep-04 12:34:39.648 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.648 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.651 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Yang_2023_Front_Oncol
Sep-04 12:34:39.651 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Yang_2023_Front_Oncol
Sep-04 12:34:39.651 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.651 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.655 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Zhang_2018_Nature
Sep-04 12:34:39.655 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Zhang_2018_Nature
Sep-04 12:34:39.655 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.655 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.659 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Zhang_2020_Cell
Sep-04 12:34:39.659 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Zhang_2020_Cell
Sep-04 12:34:39.659 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.659 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.663 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Zheng_2022_Signal_Transduct_Target_Ther
Sep-04 12:34:39.663 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Zheng_2022_Signal_Transduct_Target_Ther
Sep-04 12:34:39.663 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.663 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.680 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Load_datasets:Harmonize_datasets
Sep-04 12:34:39.680 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Load_datasets:Harmonize_datasets
Sep-04 12:34:39.680 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Load_datasets:Harmonize_datasets
Sep-04 12:34:39.680 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Load_datasets:Harmonize_datasets
Sep-04 12:34:39.681 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.681 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.698 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.699 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SPLIT_ADATA_BY_BATCH.*|.*REMOVE_AMBIENT_RNA:SCAR.*|.*:NEIGHBORS.*` matches process build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.699 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.699 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.699 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*REMOVE_AMBIENT_RNA.*|.*CELL_CYCLE_PHASE.*|.*NEIGHBORS_LEIDEN_UMAP.*|.*NEIGHBORS_LEIDEN_UMAP_SCANVI.*|.*SOLO_DOUBLETS.*` matches process build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.699 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SPLIT_ADATA_BY_BATCH.*|.*REMOVE_AMBIENT_RNA:SCAR.*|.*:NEIGHBORS.*` matches process build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.699 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.699 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.712 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpu` matches labels `gpu` for process with name build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR
Sep-04 12:34:39.712 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR
Sep-04 12:34:39.712 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*REMOVE_AMBIENT_RNA.*|.*CELL_CYCLE_PHASE.*|.*NEIGHBORS_LEIDEN_UMAP.*|.*NEIGHBORS_LEIDEN_UMAP_SCANVI.*|.*SOLO_DOUBLETS.*` matches process build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR
Sep-04 12:34:39.712 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SPLIT_ADATA_BY_BATCH.*|.*REMOVE_AMBIENT_RNA:SCAR.*|.*:NEIGHBORS.*` matches process build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR
Sep-04 12:34:39.713 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.713 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.717 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR
Sep-04 12:34:39.717 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*REMOVE_AMBIENT_RNA.*|.*CELL_CYCLE_PHASE.*|.*NEIGHBORS_LEIDEN_UMAP.*|.*NEIGHBORS_LEIDEN_UMAP_SCANVI.*|.*SOLO_DOUBLETS.*` matches process build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR
Sep-04 12:34:39.717 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.717 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.724 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Integrate_datasets:Concat_datasets
Sep-04 12:34:39.725 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:Concat_datasets
Sep-04 12:34:39.725 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:Concat_datasets
Sep-04 12:34:39.725 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:Concat_datasets
Sep-04 12:34:39.725 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.725 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.730 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.730 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SPLIT_ADATA_BY_BATCH.*|.*REMOVE_AMBIENT_RNA:SCAR.*|.*:NEIGHBORS.*` matches process build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.730 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.730 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.730 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*REMOVE_AMBIENT_RNA.*|.*CELL_CYCLE_PHASE.*|.*NEIGHBORS_LEIDEN_UMAP.*|.*NEIGHBORS_LEIDEN_UMAP_SCANVI.*|.*SOLO_DOUBLETS.*` matches process build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.730 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SPLIT_ADATA_BY_BATCH.*|.*REMOVE_AMBIENT_RNA:SCAR.*|.*:NEIGHBORS.*` matches process build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.730 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.730 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.733 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE
Sep-04 12:34:39.733 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE
Sep-04 12:34:39.733 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE
Sep-04 12:34:39.733 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*REMOVE_AMBIENT_RNA.*|.*CELL_CYCLE_PHASE.*|.*NEIGHBORS_LEIDEN_UMAP.*|.*NEIGHBORS_LEIDEN_UMAP_SCANVI.*|.*SOLO_DOUBLETS.*` matches process build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE
Sep-04 12:34:39.733 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.733 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.738 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Integrate_datasets:Filter_mito
Sep-04 12:34:39.738 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:Filter_mito
Sep-04 12:34:39.738 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:Filter_mito
Sep-04 12:34:39.738 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:Filter_mito
Sep-04 12:34:39.738 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.738 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.742 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Integrate_datasets:Get_Seeds
Sep-04 12:34:39.742 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:Get_Seeds
Sep-04 12:34:39.742 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:Get_Seeds
Sep-04 12:34:39.742 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:Get_Seeds
Sep-04 12:34:39.743 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.743 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.747 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Integrate_datasets:HVG_TUMOR
Sep-04 12:34:39.747 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:HVG_TUMOR
Sep-04 12:34:39.747 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:HVG_TUMOR
Sep-04 12:34:39.747 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:HVG_TUMOR
Sep-04 12:34:39.747 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:HVG_TUMOR
Sep-04 12:34:39.747 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:HVG_TUMOR
Sep-04 12:34:39.747 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.747 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.751 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Integrate_datasets:HVG_NORMAL
Sep-04 12:34:39.751 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:HVG_NORMAL
Sep-04 12:34:39.751 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:HVG_NORMAL
Sep-04 12:34:39.751 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:HVG_NORMAL
Sep-04 12:34:39.751 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:HVG_NORMAL
Sep-04 12:34:39.751 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:HVG_NORMAL
Sep-04 12:34:39.751 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.751 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.754 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Integrate_datasets:HVG_BLOOD
Sep-04 12:34:39.755 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:HVG_BLOOD
Sep-04 12:34:39.755 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:HVG_BLOOD
Sep-04 12:34:39.755 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:HVG_BLOOD
Sep-04 12:34:39.755 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:HVG_BLOOD
Sep-04 12:34:39.755 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:HVG_BLOOD
Sep-04 12:34:39.755 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.755 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.759 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Integrate_datasets:HVG_METASTASIS
Sep-04 12:34:39.759 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:HVG_METASTASIS
Sep-04 12:34:39.759 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:HVG_METASTASIS
Sep-04 12:34:39.759 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:HVG_METASTASIS
Sep-04 12:34:39.759 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:HVG_METASTASIS
Sep-04 12:34:39.759 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:HVG_METASTASIS
Sep-04 12:34:39.760 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.760 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.763 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Integrate_datasets:HVG_LYMPH_NODE
Sep-04 12:34:39.764 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:HVG_LYMPH_NODE
Sep-04 12:34:39.764 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:HVG_LYMPH_NODE
Sep-04 12:34:39.764 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:HVG_LYMPH_NODE
Sep-04 12:34:39.764 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:HVG_LYMPH_NODE
Sep-04 12:34:39.764 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:HVG_LYMPH_NODE
Sep-04 12:34:39.764 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.764 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.768 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Integrate_datasets:HVG_BD
Sep-04 12:34:39.768 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:HVG_BD
Sep-04 12:34:39.768 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:HVG_BD
Sep-04 12:34:39.768 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:HVG_BD
Sep-04 12:34:39.768 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:HVG_BD
Sep-04 12:34:39.768 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:HVG_BD
Sep-04 12:34:39.769 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.769 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.775 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpu` matches labels `gpu` for process with name build_atlas:Integrate_datasets:SCVI_SEED
Sep-04 12:34:39.775 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SCVI.*|.*SCANVI.*|.*Tidy.*` matches process build_atlas:Integrate_datasets:SCVI_SEED
Sep-04 12:34:39.776 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:SCVI_SEED
Sep-04 12:34:39.776 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SCVI.*|.*SCANVI.*|.*Tidy.*` matches process build_atlas:Integrate_datasets:SCVI_SEED
Sep-04 12:34:39.776 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:SCVI_SEED
Sep-04 12:34:39.776 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SCVI.*|.*SCANVI.*|.*Tidy.*` matches process build_atlas:Integrate_datasets:SCVI_SEED
Sep-04 12:34:39.776 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:SCVI_SEED
Sep-04 12:34:39.776 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:SCVI_SEED
Sep-04 12:34:39.776 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.777 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.780 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SEED:NEIGHBORS
Sep-04 12:34:39.781 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*REMOVE_AMBIENT_RNA.*|.*CELL_CYCLE_PHASE.*|.*NEIGHBORS_LEIDEN_UMAP.*|.*NEIGHBORS_LEIDEN_UMAP_SCANVI.*|.*SOLO_DOUBLETS.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SEED:NEIGHBORS
Sep-04 12:34:39.781 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SPLIT_ADATA_BY_BATCH.*|.*REMOVE_AMBIENT_RNA:SCAR.*|.*:NEIGHBORS.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SEED:NEIGHBORS
Sep-04 12:34:39.781 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.781 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.784 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SEED:LEIDEN_PAGA_UMAP
Sep-04 12:34:39.784 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*REMOVE_AMBIENT_RNA.*|.*CELL_CYCLE_PHASE.*|.*NEIGHBORS_LEIDEN_UMAP.*|.*NEIGHBORS_LEIDEN_UMAP_SCANVI.*|.*SOLO_DOUBLETS.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SEED:LEIDEN_PAGA_UMAP
Sep-04 12:34:39.785 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SPLIT_ADATA_BY_BATCH.*|.*REMOVE_AMBIENT_RNA:SCAR.*|.*:NEIGHBORS.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SEED:LEIDEN_PAGA_UMAP
Sep-04 12:34:39.787 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.787 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.788 [main] DEBUG nextflow.processor.TaskProcessor - Creating *combiner* operator for each param(s) at index(es): [1]
Sep-04 12:34:39.796 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Integrate_datasets:SEED_BD_RHAPSODY
Sep-04 12:34:39.796 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:SEED_BD_RHAPSODY
Sep-04 12:34:39.796 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:SEED_BD_RHAPSODY
Sep-04 12:34:39.796 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:SEED_BD_RHAPSODY
Sep-04 12:34:39.796 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:SEED_BD_RHAPSODY
Sep-04 12:34:39.796 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:SEED_BD_RHAPSODY
Sep-04 12:34:39.796 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.796 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.804 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Integrate_datasets:SEED_TUMOR
Sep-04 12:34:39.804 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:SEED_TUMOR
Sep-04 12:34:39.804 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:SEED_TUMOR
Sep-04 12:34:39.804 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:SEED_TUMOR
Sep-04 12:34:39.804 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:SEED_TUMOR
Sep-04 12:34:39.804 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:SEED_TUMOR
Sep-04 12:34:39.804 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.804 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.811 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Integrate_datasets:SEED_NORMAL
Sep-04 12:34:39.811 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:SEED_NORMAL
Sep-04 12:34:39.811 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:SEED_NORMAL
Sep-04 12:34:39.811 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:SEED_NORMAL
Sep-04 12:34:39.811 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:SEED_NORMAL
Sep-04 12:34:39.811 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:SEED_NORMAL
Sep-04 12:34:39.811 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.811 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.818 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Integrate_datasets:SEED_BLOOD
Sep-04 12:34:39.818 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:SEED_BLOOD
Sep-04 12:34:39.818 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:SEED_BLOOD
Sep-04 12:34:39.818 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:SEED_BLOOD
Sep-04 12:34:39.818 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:SEED_BLOOD
Sep-04 12:34:39.818 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:SEED_BLOOD
Sep-04 12:34:39.819 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.819 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.824 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Integrate_datasets:SEED_METASTASIS
Sep-04 12:34:39.825 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:SEED_METASTASIS
Sep-04 12:34:39.825 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:SEED_METASTASIS
Sep-04 12:34:39.825 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:SEED_METASTASIS
Sep-04 12:34:39.825 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:SEED_METASTASIS
Sep-04 12:34:39.825 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:SEED_METASTASIS
Sep-04 12:34:39.825 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.825 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.831 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Integrate_datasets:SEED_LYMPH_NODE
Sep-04 12:34:39.831 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:SEED_LYMPH_NODE
Sep-04 12:34:39.831 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:SEED_LYMPH_NODE
Sep-04 12:34:39.831 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:SEED_LYMPH_NODE
Sep-04 12:34:39.831 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:SEED_LYMPH_NODE
Sep-04 12:34:39.831 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:SEED_LYMPH_NODE
Sep-04 12:34:39.831 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.831 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.842 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Integrate_datasets:Merge_Seeds
Sep-04 12:34:39.842 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:Merge_Seeds
Sep-04 12:34:39.842 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:Merge_Seeds
Sep-04 12:34:39.842 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:Merge_Seeds
Sep-04 12:34:39.842 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.842 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.846 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpu` matches labels `gpu` for process with name build_atlas:Integrate_datasets:SCVI
Sep-04 12:34:39.846 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SCVI.*|.*SCANVI.*|.*Tidy.*` matches process build_atlas:Integrate_datasets:SCVI
Sep-04 12:34:39.846 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:SCVI
Sep-04 12:34:39.846 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SCVI.*|.*SCANVI.*|.*Tidy.*` matches process build_atlas:Integrate_datasets:SCVI
Sep-04 12:34:39.847 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:SCVI
Sep-04 12:34:39.847 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*HVG_.*|.*SEED_.*|.*SCVI.*` matches process build_atlas:Integrate_datasets:SCVI
Sep-04 12:34:39.847 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.847 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.850 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP:NEIGHBORS
Sep-04 12:34:39.850 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*REMOVE_AMBIENT_RNA.*|.*CELL_CYCLE_PHASE.*|.*NEIGHBORS_LEIDEN_UMAP.*|.*NEIGHBORS_LEIDEN_UMAP_SCANVI.*|.*SOLO_DOUBLETS.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP:NEIGHBORS
Sep-04 12:34:39.851 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SPLIT_ADATA_BY_BATCH.*|.*REMOVE_AMBIENT_RNA:SCAR.*|.*:NEIGHBORS.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP:NEIGHBORS
Sep-04 12:34:39.851 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.851 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.852 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP:LEIDEN_PAGA_UMAP
Sep-04 12:34:39.852 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*REMOVE_AMBIENT_RNA.*|.*CELL_CYCLE_PHASE.*|.*NEIGHBORS_LEIDEN_UMAP.*|.*NEIGHBORS_LEIDEN_UMAP_SCANVI.*|.*SOLO_DOUBLETS.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP:LEIDEN_PAGA_UMAP
Sep-04 12:34:39.852 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SPLIT_ADATA_BY_BATCH.*|.*REMOVE_AMBIENT_RNA:SCAR.*|.*:NEIGHBORS.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP:LEIDEN_PAGA_UMAP
Sep-04 12:34:39.853 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.853 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.853 [main] DEBUG nextflow.processor.TaskProcessor - Creating *combiner* operator for each param(s) at index(es): [1]
Sep-04 12:34:39.860 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:SOLO_DOUBLETS:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.860 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SPLIT_ADATA_BY_BATCH.*|.*REMOVE_AMBIENT_RNA:SCAR.*|.*:NEIGHBORS.*` matches process build_atlas:Integrate_datasets:SOLO_DOUBLETS:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.860 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:SOLO_DOUBLETS:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.860 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:SOLO_DOUBLETS:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.860 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*REMOVE_AMBIENT_RNA.*|.*CELL_CYCLE_PHASE.*|.*NEIGHBORS_LEIDEN_UMAP.*|.*NEIGHBORS_LEIDEN_UMAP_SCANVI.*|.*SOLO_DOUBLETS.*` matches process build_atlas:Integrate_datasets:SOLO_DOUBLETS:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.860 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SPLIT_ADATA_BY_BATCH.*|.*REMOVE_AMBIENT_RNA:SCAR.*|.*:NEIGHBORS.*` matches process build_atlas:Integrate_datasets:SOLO_DOUBLETS:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.860 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.860 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.865 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpu` matches labels `gpu` for process with name build_atlas:Integrate_datasets:SOLO_DOUBLETS:SOLO
Sep-04 12:34:39.865 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:SOLO_DOUBLETS:SOLO
Sep-04 12:34:39.865 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*REMOVE_AMBIENT_RNA.*|.*CELL_CYCLE_PHASE.*|.*NEIGHBORS_LEIDEN_UMAP.*|.*NEIGHBORS_LEIDEN_UMAP_SCANVI.*|.*SOLO_DOUBLETS.*` matches process build_atlas:Integrate_datasets:SOLO_DOUBLETS:SOLO
Sep-04 12:34:39.873 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.873 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.874 [main] DEBUG nextflow.processor.TaskProcessor - Creating *combiner* operator for each param(s) at index(es): [1]
Sep-04 12:34:39.880 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Integrate_datasets:Merge_SOLO
Sep-04 12:34:39.880 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:Merge_SOLO
Sep-04 12:34:39.880 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Harmonize.*|.*Concat_datasets.*|.*Filter_mito.*|.*Get_Seeds.*|.*HVG.*|.*Merge_Seeds.*|.*Merge_SOLO.*|.*Prepare.*|.*SEED_.*|.*SPLIT_ADATA_BY_BATCH.*|.*Annotate_cell_types_coarse.*|.*SCORE_CELL_CYCLE.*` matches process build_atlas:Integrate_datasets:Merge_SOLO
Sep-04 12:34:39.880 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:Merge_SOLO
Sep-04 12:34:39.880 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.880 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.887 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpu` matches labels `gpu` for process with name build_atlas:Integrate_datasets:SCANVI
Sep-04 12:34:39.887 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SCVI.*|.*SCANVI.*|.*Tidy.*` matches process build_atlas:Integrate_datasets:SCANVI
Sep-04 12:34:39.887 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SCVI.*|.*SCANVI.*|.*Tidy.*` matches process build_atlas:Integrate_datasets:SCANVI
Sep-04 12:34:39.887 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:SCANVI
Sep-04 12:34:39.887 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.887 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.888 [main] DEBUG nextflow.processor.TaskProcessor - Creating *combiner* operator for each param(s) at index(es): [1]
Sep-04 12:34:39.891 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SCVI.*|.*SCANVI.*|.*Tidy.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SCANVI:NEIGHBORS
Sep-04 12:34:39.891 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SCANVI:NEIGHBORS
Sep-04 12:34:39.891 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*REMOVE_AMBIENT_RNA.*|.*CELL_CYCLE_PHASE.*|.*NEIGHBORS_LEIDEN_UMAP.*|.*NEIGHBORS_LEIDEN_UMAP_SCANVI.*|.*SOLO_DOUBLETS.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SCANVI:NEIGHBORS
Sep-04 12:34:39.891 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SPLIT_ADATA_BY_BATCH.*|.*REMOVE_AMBIENT_RNA:SCAR.*|.*:NEIGHBORS.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SCANVI:NEIGHBORS
Sep-04 12:34:39.891 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.891 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.893 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SCVI.*|.*SCANVI.*|.*Tidy.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SCANVI:LEIDEN_PAGA_UMAP
Sep-04 12:34:39.893 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SCANVI:LEIDEN_PAGA_UMAP
Sep-04 12:34:39.893 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*REMOVE_AMBIENT_RNA.*|.*CELL_CYCLE_PHASE.*|.*NEIGHBORS_LEIDEN_UMAP.*|.*NEIGHBORS_LEIDEN_UMAP_SCANVI.*|.*SOLO_DOUBLETS.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SCANVI:LEIDEN_PAGA_UMAP
Sep-04 12:34:39.893 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SPLIT_ADATA_BY_BATCH.*|.*REMOVE_AMBIENT_RNA:SCAR.*|.*:NEIGHBORS.*` matches process build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SCANVI:LEIDEN_PAGA_UMAP
Sep-04 12:34:39.894 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.894 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.894 [main] DEBUG nextflow.processor.TaskProcessor - Creating *combiner* operator for each param(s) at index(es): [1]
Sep-04 12:34:39.900 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Tidy_atlas:Tidy_annotation
Sep-04 12:34:39.900 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SCVI.*|.*SCANVI.*|.*Tidy.*` matches process build_atlas:Tidy_atlas:Tidy_annotation
Sep-04 12:34:39.900 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SCVI.*|.*SCANVI.*|.*Tidy.*` matches process build_atlas:Tidy_atlas:Tidy_annotation
Sep-04 12:34:39.900 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Tidy_atlas:Tidy_annotation
Sep-04 12:34:39.900 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.900 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.905 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Tidy_atlas:Tidy_metadata
Sep-04 12:34:39.906 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SCVI.*|.*SCANVI.*|.*Tidy.*` matches process build_atlas:Tidy_atlas:Tidy_metadata
Sep-04 12:34:39.906 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SCVI.*|.*SCANVI.*|.*Tidy.*` matches process build_atlas:Tidy_atlas:Tidy_metadata
Sep-04 12:34:39.906 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Tidy_atlas:Tidy_metadata
Sep-04 12:34:39.906 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.906 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.910 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:JUPYTER.*` matches process build_atlas:Tidy_atlas:Export_atlas
Sep-04 12:34:39.910 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*SCVI.*|.*SCANVI.*|.*Tidy.*` matches process build_atlas:Tidy_atlas:Export_atlas
Sep-04 12:34:39.910 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*Integrate_datasets.*|.*Load_datasets.*|.*Tidy_atlas.*` matches process build_atlas:Tidy_atlas:Export_atlas
Sep-04 12:34:39.910 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm
Sep-04 12:34:39.910 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm'
Sep-04 12:34:39.913 [main] DEBUG nextflow.Session - Workflow process names [dsl2]: HTAPP_HTAN, build_atlas:Integrate_datasets:SOLO_DOUBLETS:SPLIT_ADATA_BY_BATCH, build_atlas:Integrate_datasets:SEED_BD_RHAPSODY, build_atlas:Integrate_datasets:Concat_datasets, Filter_mito, build_atlas:Integrate_datasets:SEED_NORMAL, Kong_2023_Immunity, SHEARS, Wang_2020_J_Exp_Med, Bian_2018_Science, Che_2021_Cell_Discov, build_atlas:Tidy_atlas:Tidy_annotation, Wu_2022_Cancer_Discov, build_atlas:Load_datasets:Wu_2022_Cancer_Discov, build_atlas:Integrate_datasets:HVG_LYMPH_NODE, PSEUDOBULK, SEED_METASTASIS, DESEQ2_DGEA, Chen_2021_Cell, Liu_2022_Cancer_Cell, DeVries_2023_Nature, build_atlas:Load_datasets:GarridoTrigo_2023_Nat_Commun, build_atlas:Load_datasets:MUI_Innsbruck, Merge_SOLO, Terekhanova_2023_Nature, SCORE_CELL_CYCLE, SCVI, build_atlas:Load_datasets:Giguelay_2022_Theranostics, build_atlas:Load_datasets:Han_2020_Nature, Chen_2024_Cancer_Cell, build_atlas:Load_datasets:DeVries_2023_Nature, build_atlas:Load_datasets:Bian_2018_Science, build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SCANVI:LEIDEN_PAGA_UMAP, build_atlas:Load_datasets:Masuda_2022_JCI_Insight, build_atlas:Load_datasets:Elmentaite_2021_Nature, Tian_2023_Nat_Med, Burclaff_2022_Cell_Mol_Gastroenterol_Hepatol, build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR, build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE, Concat_datasets, LEIDEN_PAGA_UMAP, build_atlas:Load_datasets:Wang_2020_J_Exp_Med, build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SPLIT_ADATA_BY_BATCH, build_atlas:Load_datasets:Guo_2022_JCI_Insight, MUI_Innsbruck, UZH_Zurich, SCVI_SEED, Export_atlas, Qin_2023_Cell_Rep_Med, SEED_NORMAL, build_atlas:Load_datasets:Qin_2023_Cell_Rep_Med, build_atlas:Load_datasets:Wu_2024_Cell, build_atlas:Load_datasets:Liu_2022_Cancer_Cell, build_atlas:Load_datasets:Lee_2020_Nat_Genet, build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR, build_atlas:Load_datasets:Sathe_2023_Clin_Cancer_Res, Qian_2020_Cell_Res, Pelka_2021_Cell, build_atlas:Load_datasets:MUI_Innsbruck_AbSeq, Wang_2023_Sci_Adv, build_atlas:Load_datasets:Chen_2024_Cancer_Cell, Qi_2022_Nat_Commun, build_atlas:Load_datasets:Li_2017_Nat_Genet, SPLIT_ADATA_BY_BATCH, build_atlas:Load_datasets:James_2020_Nat_Immunol, Borras_2023_Cell_Discov, SEED_BLOOD, build_atlas:Load_datasets:Wang_2021_Adv_Sci, build_atlas:Load_datasets:Parikh_2019_Nature, SEED_TUMOR, Zhang_2020_Cell, SCANVI, build_atlas:Integrate_datasets:SOLO_DOUBLETS:SOLO, Scheid_2023_J_EXP_Med, build_atlas:Load_datasets:Scheid_2023_J_EXP_Med, build_atlas:Tidy_atlas:Export_atlas, build_atlas:Load_datasets:Chen_2021_Cell, HVG_LYMPH_NODE, build_atlas:Load_datasets:Thomas_2024_Nat_Med, Uhlitz_2021_EMBO_Mol_Med, build_atlas:Load_datasets:Zhang_2020_Cell, build_atlas:Load_datasets:Burclaff_2022_Cell_Mol_Gastroenterol_Hepatol, build_atlas:Load_datasets:Harmonize_datasets, build_atlas:Integrate_datasets:SCVI, build_atlas:Integrate_datasets:HVG_BD, Annotate_cell_types_bd, Merge_Seeds, build_atlas:Tidy_atlas:Tidy_metadata, build_atlas:Integrate_datasets:HVG_NORMAL, Thomas_2024_Nat_Med, build_atlas:Load_datasets:Harmon_2023_Nat_Cancer, Tidy_metadata, Zhang_2018_Nature, build_atlas:Load_datasets:Li_2023_Cancer_Cell, build_atlas:Load_datasets:Ji_2024_PLoS_Genet, build_atlas:Integrate_datasets:HVG_BLOOD, build_atlas:Load_datasets:HTAPP_HTAN, build_atlas:Integrate_datasets:Merge_Seeds, build_atlas:Load_datasets:Zhang_2018_Nature, SCAR, build_atlas:Load_datasets:Conde_2022_Science, MUI_Innsbruck_AbSeq, build_atlas:Load_datasets:Liu_2024_Cancer_Res, build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP:LEIDEN_PAGA_UMAP, Wu_2024_Cell, build_atlas:Load_datasets:Qi_2022_Nat_Commun, build_atlas:Integrate_datasets:Get_Seeds, HVG_TUMOR, James_2020_Nat_Immunol, build_atlas:Integrate_datasets:HVG_METASTASIS, build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SEED:LEIDEN_PAGA_UMAP, Khaliq_2022_Genome_Biol, GarridoTrigo_2023_Nat_Commun, Li_2023_Cancer_Cell, HVG_BLOOD, Masuda_2022_JCI_Insight, Han_2020_Nature, Mazzurana_2021_Cell_Res, Zheng_2022_Signal_Transduct_Target_Ther, Get_Seeds, JUPYTERNOTEBOOK, Ji_2024_Cancer_Lett, build_atlas:Load_datasets:Terekhanova_2023_Nature, build_atlas:Load_datasets:Khaliq_2022_Genome_Biol, build_atlas:Load_datasets:Mazzurana_2021_Cell_Res, build_atlas:Integrate_datasets:SCANVI, build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SCANVI:NEIGHBORS, Li_2017_Nat_Genet, HVG_METASTASIS, build_atlas:Load_datasets:Kong_2023_Immunity, SEED_BD_RHAPSODY, build_atlas:Load_datasets:Wang_2023_Sci_Adv, build_atlas:Load_datasets:Yang_2023_Front_Oncol, build_atlas:Load_datasets:Ji_2024_Cancer_Lett, build_atlas:Integrate_datasets:SEED_LYMPH_NODE, build_atlas:Load_datasets:Joanito_2022_Nat_Genet, build_atlas:Integrate_datasets:Merge_SOLO, build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH, Guo_2022_JCI_Insight, NEIGHBORS, build_atlas:Load_datasets:Huang_2024_Nat_Cancer, HVG_NORMAL, build_atlas:Integrate_datasets:Filter_mito, build_atlas:Integrate_datasets:SEED_TUMOR, build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP:NEIGHBORS, build_atlas:Load_datasets:Tian_2023_Nat_Med, He_2020_Genome_Biol, build_atlas:Load_datasets:He_2020_Genome_Biol, Yang_2023_Front_Oncol, Sathe_2023_Clin_Cancer_Res, build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SEED:NEIGHBORS, Wang_2021_Adv_Sci, build_atlas:Integrate_datasets:HVG_TUMOR, SEED_LYMPH_NODE, Joanito_2022_Nat_Genet, build_atlas:Load_datasets:Uhlitz_2021_EMBO_Mol_Med, build_atlas:Integrate_datasets:SEED_BLOOD, Huang_2024_Nat_Cancer, Liu_2024_Cancer_Res, Harmonize_datasets, Conde_2022_Science, Parikh_2019_Nature, build_atlas:Load_datasets:Borras_2023_Cell_Discov, Lee_2020_Nat_Genet, build_atlas:Load_datasets:Pelka_2021_Cell, MERGE_SCAR, Ji_2024_PLoS_Genet, Harmon_2023_Nat_Cancer, Tidy_annotation, build_atlas:Load_datasets:Che_2021_Cell_Discov, HVG_BD, Elmentaite_2021_Nature, build_atlas:Integrate_datasets:SCVI_SEED, SOLO, build_atlas:Load_datasets:Qian_2020_Cell_Res, build_atlas:Load_datasets:UZH_Zurich, Giguelay_2022_Theranostics, build_atlas:Load_datasets:Zheng_2022_Signal_Transduct_Target_Ther, build_atlas:Integrate_datasets:SEED_METASTASIS
Sep-04 12:34:39.914 [main] DEBUG nextflow.Session - Igniting dataflow network (194)
Sep-04 12:34:39.919 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Bian_2018_Science
Sep-04 12:34:39.919 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Borras_2023_Cell_Discov
Sep-04 12:34:39.919 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Burclaff_2022_Cell_Mol_Gastroenterol_Hepatol
Sep-04 12:34:39.919 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Che_2021_Cell_Discov
Sep-04 12:34:39.919 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Chen_2021_Cell
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Chen_2024_Cancer_Cell
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Conde_2022_Science
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:DeVries_2023_Nature
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Elmentaite_2021_Nature
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:GarridoTrigo_2023_Nat_Commun
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Giguelay_2022_Theranostics
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Guo_2022_JCI_Insight
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Han_2020_Nature
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Harmon_2023_Nat_Cancer
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:He_2020_Genome_Biol
Sep-04 12:34:39.921 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:HTAPP_HTAN
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Huang_2024_Nat_Cancer
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:James_2020_Nat_Immunol
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Ji_2024_Cancer_Lett
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Ji_2024_PLoS_Genet
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Joanito_2022_Nat_Genet
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Khaliq_2022_Genome_Biol
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Kong_2023_Immunity
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Lee_2020_Nat_Genet
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Li_2017_Nat_Genet
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Li_2023_Cancer_Cell
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Liu_2022_Cancer_Cell
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Liu_2024_Cancer_Res
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Masuda_2022_JCI_Insight
Sep-04 12:34:39.920 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Mazzurana_2021_Cell_Res
Sep-04 12:34:39.921 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:MUI_Innsbruck_AbSeq
Sep-04 12:34:39.921 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:MUI_Innsbruck
Sep-04 12:34:39.921 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Parikh_2019_Nature
Sep-04 12:34:39.921 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Pelka_2021_Cell
Sep-04 12:34:39.921 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Qi_2022_Nat_Commun
Sep-04 12:34:39.921 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Qian_2020_Cell_Res
Sep-04 12:34:39.921 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Qin_2023_Cell_Rep_Med
Sep-04 12:34:39.921 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Sathe_2023_Clin_Cancer_Res
Sep-04 12:34:39.921 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Scheid_2023_J_EXP_Med
Sep-04 12:34:39.921 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Terekhanova_2023_Nature
Sep-04 12:34:39.921 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Thomas_2024_Nat_Med
Sep-04 12:34:39.921 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Tian_2023_Nat_Med
Sep-04 12:34:39.921 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Uhlitz_2021_EMBO_Mol_Med
Sep-04 12:34:39.921 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:UZH_Zurich
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Wang_2020_J_Exp_Med
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Wang_2021_Adv_Sci
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Wang_2023_Sci_Adv
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Wu_2022_Cancer_Discov
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Wu_2024_Cell
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Yang_2023_Front_Oncol
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Zhang_2018_Nature
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Zhang_2020_Cell
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Zheng_2022_Signal_Transduct_Target_Ther
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Load_datasets:Harmonize_datasets
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:Concat_datasets
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:Filter_mito
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:Get_Seeds
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:HVG_TUMOR
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:HVG_NORMAL
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:HVG_BLOOD
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:HVG_METASTASIS
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:HVG_LYMPH_NODE
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:HVG_BD
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:SCVI_SEED
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SEED:NEIGHBORS
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SEED:LEIDEN_PAGA_UMAP
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SEED:LEIDEN_PAGA_UMAP
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:SEED_BD_RHAPSODY
Sep-04 12:34:39.922 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:SEED_TUMOR
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:SEED_NORMAL
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:SEED_BLOOD
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:SEED_METASTASIS
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:SEED_LYMPH_NODE
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:Merge_Seeds
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:SCVI
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP:NEIGHBORS
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP:LEIDEN_PAGA_UMAP
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP:LEIDEN_PAGA_UMAP
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:SOLO_DOUBLETS:SPLIT_ADATA_BY_BATCH
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:SOLO_DOUBLETS:SOLO
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:SOLO_DOUBLETS:SOLO
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:Merge_SOLO
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:SCANVI
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:SCANVI
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SCANVI:NEIGHBORS
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SCANVI:LEIDEN_PAGA_UMAP
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Integrate_datasets:NEIGHBORS_LEIDEN_UMAP_SCANVI:LEIDEN_PAGA_UMAP
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Tidy_atlas:Tidy_annotation
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Tidy_atlas:Tidy_metadata
Sep-04 12:34:39.923 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > build_atlas:Tidy_atlas:Export_atlas
Sep-04 12:34:39.923 [main] DEBUG nextflow.script.ScriptRunner - > Awaiting termination
Sep-04 12:34:39.923 [main] DEBUG nextflow.Session - Session await
Sep-04 12:34:40.537 [Actor Thread 86] INFO nextflow.processor.TaskProcessor - [56/8e5094] Cached process > build_atlas:Load_datasets:Chen_2024_Cancer_Cell (Chen_2024_Cancer_Cell)
Sep-04 12:34:40.537 [Actor Thread 72] INFO nextflow.processor.TaskProcessor - [1a/3a2dd8] Cached process > build_atlas:Load_datasets:Huang_2024_Nat_Cancer (Huang_2024_Nat_Cancer)
Sep-04 12:34:40.545 [Actor Thread 133] INFO nextflow.processor.TaskProcessor - [82/cc8e4f] Cached process > build_atlas:Load_datasets:MUI_Innsbruck_AbSeq (MUI_Innsbruck_AbSeq)
Sep-04 12:34:40.547 [Actor Thread 47] INFO nextflow.processor.TaskProcessor - [b6/047836] Cached process > build_atlas:Load_datasets:Mazzurana_2021_Cell_Res (Mazzurana_2021_Cell_Res)
Sep-04 12:34:40.549 [Actor Thread 63] INFO nextflow.processor.TaskProcessor - [68/29c440] Cached process > build_atlas:Load_datasets:Harmon_2023_Nat_Cancer (Harmon_2023_Nat_Cancer)
Sep-04 12:34:40.549 [Actor Thread 77] INFO nextflow.processor.TaskProcessor - [53/16b18a] Cached process > build_atlas:Load_datasets:UZH_Zurich (UZH_Zurich)
Sep-04 12:34:40.554 [Actor Thread 73] INFO nextflow.processor.TaskProcessor - [dc/a52db4] Cached process > build_atlas:Load_datasets:Masuda_2022_JCI_Insight (Masuda_2022_JCI_Insight)
Sep-04 12:34:40.560 [Actor Thread 55] INFO nextflow.processor.TaskProcessor - [6e/fe3156] Cached process > build_atlas:Load_datasets:Bian_2018_Science (Bian_2018_Science)
Sep-04 12:34:40.564 [Actor Thread 80] INFO nextflow.processor.TaskProcessor - [b4/7f856c] Cached process > build_atlas:Load_datasets:Wu_2022_Cancer_Discov (Wu_2022_Cancer_Discov)
Sep-04 12:34:40.569 [Actor Thread 72] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'PublishDir' minSize=10; maxSize=432; workQueue=LinkedBlockingQueue[10000]; allowCoreThreadTimeout=false
Sep-04 12:34:40.570 [Actor Thread 35] INFO nextflow.processor.TaskProcessor - [f2/0e5f4e] Cached process > build_atlas:Load_datasets:Khaliq_2022_Genome_Biol (Khaliq_2022_Genome_Biol)
Sep-04 12:34:40.571 [Actor Thread 89] INFO nextflow.processor.TaskProcessor - [ea/d79ed1] Cached process > build_atlas:Load_datasets:Zhang_2020_Cell (Zhang_2020_Cell)
Sep-04 12:34:40.571 [Actor Thread 81] INFO nextflow.processor.TaskProcessor - [ef/c8f11a] Cached process > build_atlas:Load_datasets:Qi_2022_Nat_Commun (Qi_2022_Nat_Commun)
Sep-04 12:34:40.572 [Actor Thread 50] INFO nextflow.processor.TaskProcessor - [7c/922180] Cached process > build_atlas:Load_datasets:Burclaff_2022_Cell_Mol_Gastroenterol_Hepatol (Burclaff_2022_Cell_Mol_Gastroenterol_Hepatol)
Sep-04 12:34:40.572 [Actor Thread 51] INFO nextflow.processor.TaskProcessor - [4a/ba1385] Cached process > build_atlas:Load_datasets:Liu_2024_Cancer_Res (Liu_2024_Cancer_Res)
Sep-04 12:34:40.573 [Actor Thread 65] INFO nextflow.processor.TaskProcessor - [b3/dcd558] Cached process > build_atlas:Load_datasets:MUI_Innsbruck (MUI_Innsbruck)
Sep-04 12:34:40.579 [Actor Thread 62] INFO nextflow.processor.TaskProcessor - [65/7d728a] Cached process > build_atlas:Load_datasets:Wang_2021_Adv_Sci (Wang_2021_Adv_Sci)
Sep-04 12:34:40.580 [Actor Thread 90] INFO nextflow.processor.TaskProcessor - [73/e58a38] Cached process > build_atlas:Load_datasets:Ji_2024_PLoS_Genet (Ji_2024_PLoS_Genet)
Sep-04 12:34:40.584 [Actor Thread 64] INFO nextflow.processor.TaskProcessor - [0e/946175] Cached process > build_atlas:Load_datasets:Liu_2022_Cancer_Cell (Liu_2022_Cancer_Cell)
Sep-04 12:34:40.587 [Actor Thread 43] INFO nextflow.processor.TaskProcessor - [a9/00fd2f] Cached process > build_atlas:Load_datasets:Yang_2023_Front_Oncol (Yang_2023_Front_Oncol)
Sep-04 12:34:40.589 [Actor Thread 91] INFO nextflow.processor.TaskProcessor - [a4/b495b9] Cached process > build_atlas:Load_datasets:Borras_2023_Cell_Discov (Borras_2023_Cell_Discov)
Sep-04 12:34:40.602 [Actor Thread 79] INFO nextflow.processor.TaskProcessor - [97/7cb6ea] Cached process > build_atlas:Load_datasets:Kong_2023_Immunity (Kong_2023_Immunity)
Sep-04 12:34:40.604 [Actor Thread 83] INFO nextflow.processor.TaskProcessor - [95/5b75d2] Cached process > build_atlas:Load_datasets:He_2020_Genome_Biol (He_2020_Genome_Biol)
Sep-04 12:34:40.604 [Actor Thread 71] INFO nextflow.processor.TaskProcessor - [2f/3e125b] Cached process > build_atlas:Load_datasets:Tian_2023_Nat_Med (Tian_2023_Nat_Med)
Sep-04 12:34:40.605 [Actor Thread 56] INFO nextflow.processor.TaskProcessor - [93/80c7ad] Cached process > build_atlas:Load_datasets:Zheng_2022_Signal_Transduct_Target_Ther (Zheng_2022_Signal_Transduct_Target_Ther)
Sep-04 12:34:40.607 [Actor Thread 58] INFO nextflow.processor.TaskProcessor - [df/5adc35] Cached process > build_atlas:Load_datasets:Scheid_2023_J_EXP_Med (Scheid_2023_J_EXP_Med)
Sep-04 12:34:40.613 [Actor Thread 82] INFO nextflow.processor.TaskProcessor - [8f/48cdb3] Cached process > build_atlas:Load_datasets:Joanito_2022_Nat_Genet (Joanito_2022_Nat_Genet)
Sep-04 12:34:40.613 [Actor Thread 54] INFO nextflow.processor.TaskProcessor - [1d/b34c76] Cached process > build_atlas:Load_datasets:Parikh_2019_Nature (Parikh_2019_Nature)
Sep-04 12:34:40.634 [Actor Thread 59] INFO nextflow.processor.TaskProcessor - [f0/a8bfad] Cached process > build_atlas:Load_datasets:Wang_2020_J_Exp_Med (Wang_2020_J_Exp_Med)
Sep-04 12:34:40.637 [Actor Thread 42] INFO nextflow.processor.TaskProcessor - [43/67dba5] Cached process > build_atlas:Load_datasets:Pelka_2021_Cell (Pelka_2021_Cell)
Sep-04 12:34:40.648 [Actor Thread 78] INFO nextflow.processor.TaskProcessor - [c6/f33695] Cached process > build_atlas:Load_datasets:HTAPP_HTAN (HTAPP_HTAN)
Sep-04 12:34:40.652 [Actor Thread 53] INFO nextflow.processor.TaskProcessor - [9f/bbadf5] Cached process > build_atlas:Load_datasets:Wang_2023_Sci_Adv (Wang_2023_Sci_Adv)
Sep-04 12:34:40.660 [Actor Thread 52] INFO nextflow.processor.TaskProcessor - [16/ee8728] Cached process > build_atlas:Load_datasets:Han_2020_Nature (Han_2020_Nature)
Sep-04 12:34:40.660 [Actor Thread 37] INFO nextflow.processor.TaskProcessor - [ab/3b486f] Cached process > build_atlas:Load_datasets:Giguelay_2022_Theranostics (Giguelay_2022_Theranostics)
Sep-04 12:34:40.661 [Actor Thread 66] INFO nextflow.processor.TaskProcessor - [f8/1dcfe0] Cached process > build_atlas:Load_datasets:Li_2023_Cancer_Cell (Li_2023_Cancer_Cell)
Sep-04 12:34:40.661 [Actor Thread 75] INFO nextflow.processor.TaskProcessor - [50/f272bf] Cached process > build_atlas:Load_datasets:Che_2021_Cell_Discov (Che_2021_Cell_Discov)
Sep-04 12:34:40.665 [Actor Thread 68] INFO nextflow.processor.TaskProcessor - [03/367604] Cached process > build_atlas:Load_datasets:Conde_2022_Science (Conde_2022_Science)
Sep-04 12:34:40.687 [Actor Thread 67] INFO nextflow.processor.TaskProcessor - [bf/6b687b] Cached process > build_atlas:Load_datasets:Qian_2020_Cell_Res (Qian_2020_Cell_Res)
Sep-04 12:34:40.687 [Actor Thread 76] INFO nextflow.processor.TaskProcessor - [fb/9992be] Cached process > build_atlas:Load_datasets:Wu_2024_Cell (Wu_2024_Cell)
Sep-04 12:34:40.693 [Actor Thread 38] INFO nextflow.processor.TaskProcessor - [50/4c172e] Cached process > build_atlas:Load_datasets:Sathe_2023_Clin_Cancer_Res (Sathe_2023_Clin_Cancer_Res)
Sep-04 12:34:40.694 [Actor Thread 61] INFO nextflow.processor.TaskProcessor - [a3/c42644] Cached process > build_atlas:Load_datasets:James_2020_Nat_Immunol (James_2020_Nat_Immunol)
Sep-04 12:34:40.702 [Actor Thread 74] INFO nextflow.processor.TaskProcessor - [d4/c10622] Cached process > build_atlas:Load_datasets:Ji_2024_Cancer_Lett (Ji_2024_Cancer_Lett)
Sep-04 12:34:40.703 [Actor Thread 57] INFO nextflow.processor.TaskProcessor - [00/d74143] Cached process > build_atlas:Load_datasets:DeVries_2023_Nature (DeVries_2023_Nature)
Sep-04 12:34:40.717 [Actor Thread 60] INFO nextflow.processor.TaskProcessor - [78/37ac72] Cached process > build_atlas:Load_datasets:Uhlitz_2021_EMBO_Mol_Med (Uhlitz_2021_EMBO_Mol_Med)
Sep-04 12:34:40.720 [Actor Thread 70] INFO nextflow.processor.TaskProcessor - [73/00d2d9] Cached process > build_atlas:Load_datasets:Qin_2023_Cell_Rep_Med (Qin_2023_Cell_Rep_Med)
Sep-04 12:34:40.724 [Actor Thread 40] INFO nextflow.processor.TaskProcessor - [7e/56d563] Cached process > build_atlas:Load_datasets:Terekhanova_2023_Nature (Terekhanova_2023_Nature)
Sep-04 12:34:40.732 [Actor Thread 31] INFO nextflow.processor.TaskProcessor - [6a/2b24c3] Cached process > build_atlas:Load_datasets:Chen_2021_Cell (Chen_2021_Cell)
Sep-04 12:34:40.732 [Actor Thread 87] INFO nextflow.processor.TaskProcessor - [c5/3d9415] Cached process > build_atlas:Load_datasets:Thomas_2024_Nat_Med (Thomas_2024_Nat_Med)
Sep-04 12:34:40.754 [Actor Thread 69] INFO nextflow.processor.TaskProcessor - [4e/7dfb4d] Cached process > build_atlas:Load_datasets:Li_2017_Nat_Genet (Li_2017_Nat_Genet)
Sep-04 12:34:40.778 [Actor Thread 33] INFO nextflow.processor.TaskProcessor - [2c/7e8f23] Cached process > build_atlas:Load_datasets:Guo_2022_JCI_Insight (Guo_2022_JCI_Insight)
Sep-04 12:34:40.778 [Actor Thread 84] INFO nextflow.processor.TaskProcessor - [e6/592064] Cached process > build_atlas:Load_datasets:Elmentaite_2021_Nature (Elmentaite_2021_Nature)
Sep-04 12:34:40.783 [Actor Thread 34] INFO nextflow.processor.TaskProcessor - [4c/391119] Cached process > build_atlas:Load_datasets:GarridoTrigo_2023_Nat_Commun (GarridoTrigo_2023_Nat_Commun)
Sep-04 12:34:40.787 [Actor Thread 85] INFO nextflow.processor.TaskProcessor - [48/fab329] Cached process > build_atlas:Load_datasets:Lee_2020_Nat_Genet (Lee_2020_Nat_Genet)
Sep-04 12:34:40.825 [Actor Thread 88] INFO nextflow.processor.TaskProcessor - [70/8dab00] Cached process > build_atlas:Load_datasets:Zhang_2018_Nature (Zhang_2018_Nature)
Sep-04 12:34:40.945 [Actor Thread 100] INFO nextflow.processor.TaskProcessor - [b2/239de2] Cached process > build_atlas:Load_datasets:Harmonize_datasets (01-Harmonize_datasets)
Sep-04 12:34:40.984 [Actor Thread 143] INFO nextflow.processor.TaskProcessor - [e9/a4e917] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (14)
Sep-04 12:34:40.985 [Actor Thread 128] INFO nextflow.processor.TaskProcessor - [be/376410] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (28)
Sep-04 12:34:40.986 [Actor Thread 75] INFO nextflow.processor.TaskProcessor - [ca/f5893a] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (41)
Sep-04 12:34:40.986 [Actor Thread 34] INFO nextflow.processor.TaskProcessor - [99/2f377b] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (1)
Sep-04 12:34:40.987 [Actor Thread 87] INFO nextflow.processor.TaskProcessor - [52/a71303] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (8)
Sep-04 12:34:40.987 [Actor Thread 122] INFO nextflow.processor.TaskProcessor - [92/ec2be4] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (7)
Sep-04 12:34:40.987 [Actor Thread 117] INFO nextflow.processor.TaskProcessor - [5e/48071b] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (25)
Sep-04 12:34:40.988 [Actor Thread 57] INFO nextflow.processor.TaskProcessor - [7e/b30b6d] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (12)
Sep-04 12:34:40.989 [Actor Thread 114] INFO nextflow.processor.TaskProcessor - [00/9b0434] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (49)
Sep-04 12:34:40.989 [Actor Thread 78] INFO nextflow.processor.TaskProcessor - [70/cd0d35] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (36)
Sep-04 12:34:40.989 [Actor Thread 40] INFO nextflow.processor.TaskProcessor - [82/d4de1d] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (16)
Sep-04 12:34:40.990 [Actor Thread 76] INFO nextflow.processor.TaskProcessor - [94/10dd3b] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (31)
Sep-04 12:34:40.990 [Actor Thread 103] INFO nextflow.processor.TaskProcessor - [da/cd835d] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (48)
Sep-04 12:34:40.990 [Actor Thread 102] INFO nextflow.processor.TaskProcessor - [0f/117712] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (5)
Sep-04 12:34:40.990 [Actor Thread 112] INFO nextflow.processor.TaskProcessor - [58/db09cb] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (29)
Sep-04 12:34:40.990 [Actor Thread 69] INFO nextflow.processor.TaskProcessor - [b1/8c4b6c] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (10)
Sep-04 12:34:40.991 [Actor Thread 127] INFO nextflow.processor.TaskProcessor - [88/1bc091] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (35)
Sep-04 12:34:40.991 [Actor Thread 74] INFO nextflow.processor.TaskProcessor - [cb/279fbf] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (23)
Sep-04 12:34:40.991 [Actor Thread 38] INFO nextflow.processor.TaskProcessor - [76/267f2a] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (37)
Sep-04 12:34:40.992 [Actor Thread 134] INFO nextflow.processor.TaskProcessor - [59/d98187] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (46)
Sep-04 12:34:40.992 [Actor Thread 141] INFO nextflow.processor.TaskProcessor - [53/cccd67] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (47)
Sep-04 12:34:40.992 [Actor Thread 70] INFO nextflow.processor.TaskProcessor - [85/597fcf] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (13)
Sep-04 12:34:40.992 [Actor Thread 67] INFO nextflow.processor.TaskProcessor - [a6/75bc64] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (30)
Sep-04 12:34:40.994 [Actor Thread 37] INFO nextflow.processor.TaskProcessor - [77/8d380a] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (40)
Sep-04 12:34:40.994 [Actor Thread 88] INFO nextflow.processor.TaskProcessor - [04/cbfe4e] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (6)
Sep-04 12:34:40.994 [Actor Thread 66] INFO nextflow.processor.TaskProcessor - [c2/eb0e58] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (33)
Sep-04 12:34:40.995 [Actor Thread 68] INFO nextflow.processor.TaskProcessor - [da/fe62c9] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (32)
Sep-04 12:34:40.996 [Actor Thread 115] INFO nextflow.processor.TaskProcessor - [4f/aebbaf] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (3)
Sep-04 12:34:40.999 [Actor Thread 31] INFO nextflow.processor.TaskProcessor - [32/c6ef41] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (17)
Sep-04 12:34:41.000 [Actor Thread 132] INFO nextflow.processor.TaskProcessor - [95/db416c] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (20)
Sep-04 12:34:41.000 [Actor Thread 61] INFO nextflow.processor.TaskProcessor - [c1/3c52ef] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (22)
Sep-04 12:34:41.000 [Actor Thread 121] INFO nextflow.processor.TaskProcessor - [0c/bafea0] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (15)
Sep-04 12:34:41.001 [Actor Thread 105] INFO nextflow.processor.TaskProcessor - [e4/da60ee] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (26)
Sep-04 12:34:41.001 [Actor Thread 84] INFO nextflow.processor.TaskProcessor - [40/4063e8] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (27)
Sep-04 12:34:41.001 [Actor Thread 140] INFO nextflow.processor.TaskProcessor - [5b/2cc282] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (9)
Sep-04 12:34:41.001 [Actor Thread 53] INFO nextflow.processor.TaskProcessor - [d5/f2ff19] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (45)
Sep-04 12:34:41.003 [Actor Thread 52] INFO nextflow.processor.TaskProcessor - [23/56dda9] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (42)
Sep-04 12:34:41.004 [Actor Thread 60] INFO nextflow.processor.TaskProcessor - [18/5da46b] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (19)
Sep-04 12:34:41.004 [Actor Thread 97] INFO nextflow.processor.TaskProcessor - [45/ac5682] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (50)
Sep-04 12:34:41.006 [Actor Thread 129] INFO nextflow.processor.TaskProcessor - [53/55fa55] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (39)
Sep-04 12:34:41.008 [Actor Thread 123] INFO nextflow.processor.TaskProcessor - [b1/745bc8] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (21)
Sep-04 12:34:41.009 [Actor Thread 145] INFO nextflow.processor.TaskProcessor - [07/aeab25] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (24)
Sep-04 12:34:41.009 [Actor Thread 104] INFO nextflow.processor.TaskProcessor - [06/65bf56] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (34)
Sep-04 12:34:41.009 [Actor Thread 85] INFO nextflow.processor.TaskProcessor - [a4/667b61] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (2)
Sep-04 12:34:41.010 [Actor Thread 94] INFO nextflow.processor.TaskProcessor - [64/816ac2] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (11)
Sep-04 12:34:41.013 [Actor Thread 130] INFO nextflow.processor.TaskProcessor - [ed/47fcf0] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (44)
Sep-04 12:34:41.015 [Actor Thread 137] INFO nextflow.processor.TaskProcessor - [47/b30726] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (38)
Sep-04 12:34:41.015 [Actor Thread 33] INFO nextflow.processor.TaskProcessor - [50/d644c6] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (4)
Sep-04 12:34:41.018 [Actor Thread 42] INFO nextflow.processor.TaskProcessor - [3b/60f607] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (43)
Sep-04 12:34:41.024 [Actor Thread 108] INFO nextflow.processor.TaskProcessor - [11/3dafd1] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SPLIT_ADATA_BY_BATCH (18)
Sep-04 12:34:41.046 [Actor Thread 129] INFO nextflow.processor.TaskProcessor - [2e/712dd2] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (2)
Sep-04 12:34:41.046 [Actor Thread 100] INFO nextflow.processor.TaskProcessor - [23/8cdbb9] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (5)
Sep-04 12:34:41.048 [Actor Thread 33] INFO nextflow.processor.TaskProcessor - [e2/8a8816] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (4)
Sep-04 12:34:41.050 [Actor Thread 115] INFO nextflow.processor.TaskProcessor - [80/5f4527] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (24)
Sep-04 12:34:41.051 [Actor Thread 135] INFO nextflow.processor.TaskProcessor - [e4/d16a9b] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (15)
Sep-04 12:34:41.051 [Actor Thread 97] INFO nextflow.processor.TaskProcessor - [55/ed3dd7] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (12)
Sep-04 12:34:41.052 [Actor Thread 140] INFO nextflow.processor.TaskProcessor - [92/b3e5f2] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (18)
Sep-04 12:34:41.052 [Actor Thread 132] INFO nextflow.processor.TaskProcessor - [f5/f1dcd5] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (20)
Sep-04 12:34:41.052 [Actor Thread 137] INFO nextflow.processor.TaskProcessor - [50/68d3ff] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (29)
Sep-04 12:34:41.053 [Actor Thread 42] INFO nextflow.processor.TaskProcessor - [0e/2c8709] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (1)
Sep-04 12:34:41.054 [Actor Thread 37] INFO nextflow.processor.TaskProcessor - [ba/4c4839] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (30)
Sep-04 12:34:41.054 [Actor Thread 60] INFO nextflow.processor.TaskProcessor - [10/0740ff] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (14)
Sep-04 12:34:41.055 [Actor Thread 74] INFO nextflow.processor.TaskProcessor - [3e/0218d7] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (36)
Sep-04 12:34:41.055 [Actor Thread 85] INFO nextflow.processor.TaskProcessor - [dd/54ab5d] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (3)
Sep-04 12:34:41.055 [Actor Thread 66] INFO nextflow.processor.TaskProcessor - [ac/60f863] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (8)
Sep-04 12:34:41.056 [Actor Thread 56] INFO nextflow.processor.TaskProcessor - [ff/c8aa5b] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (56)
Sep-04 12:34:41.056 [Actor Thread 75] INFO nextflow.processor.TaskProcessor - [08/6951de] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (48)
Sep-04 12:34:41.056 [Actor Thread 71] INFO nextflow.processor.TaskProcessor - [83/9ca4e9] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (59)
Sep-04 12:34:41.056 [Actor Thread 105] INFO nextflow.processor.TaskProcessor - [6e/f70f04] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (19)
Sep-04 12:34:41.056 [Actor Thread 141] INFO nextflow.processor.TaskProcessor - [7d/495bc2] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (31)
Sep-04 12:34:41.057 [Actor Thread 103] INFO nextflow.processor.TaskProcessor - [9b/789f35] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (35)
Sep-04 12:34:41.058 [Actor Thread 88] INFO nextflow.processor.TaskProcessor - [4d/ed094b] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (28)
Sep-04 12:34:41.058 [Actor Thread 87] INFO nextflow.processor.TaskProcessor - [8a/3f3f45] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (46)
Sep-04 12:34:41.059 [Actor Thread 61] INFO nextflow.processor.TaskProcessor - [4b/3c02a0] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (21)
Sep-04 12:34:41.059 [Actor Thread 57] INFO nextflow.processor.TaskProcessor - [5a/423ed2] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (49)
Sep-04 12:34:41.059 [Actor Thread 130] INFO nextflow.processor.TaskProcessor - [48/3b025f] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (27)
Sep-04 12:34:41.059 [Actor Thread 95] INFO nextflow.processor.TaskProcessor - [f7/0764c9] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (57)
Sep-04 12:34:41.060 [Actor Thread 127] INFO nextflow.processor.TaskProcessor - [7c/a7a7c5] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (32)
Sep-04 12:34:41.060 [Actor Thread 83] INFO nextflow.processor.TaskProcessor - [e1/4aa3a3] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (61)
Sep-04 12:34:41.061 [Actor Thread 40] INFO nextflow.processor.TaskProcessor - [33/af8606] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (40)
Sep-04 12:34:41.062 [Actor Thread 78] INFO nextflow.processor.TaskProcessor - [f3/00ba2c] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (44)
Sep-04 12:34:41.062 [Actor Thread 117] INFO nextflow.processor.TaskProcessor - [71/4e1b19] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (47)
Sep-04 12:34:41.062 [Actor Thread 58] INFO nextflow.processor.TaskProcessor - [9f/1adb3e] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (50)
Sep-04 12:34:41.062 [Actor Thread 36] INFO nextflow.processor.TaskProcessor - [81/5fe3b0] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (74)
Sep-04 12:34:41.063 [Actor Thread 112] INFO nextflow.processor.TaskProcessor - [bb/310345] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (51)
Sep-04 12:34:41.063 [Actor Thread 94] INFO nextflow.processor.TaskProcessor - [89/e5c767] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (7)
Sep-04 12:34:41.063 [Actor Thread 122] INFO nextflow.processor.TaskProcessor - [0e/f960d8] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (52)
Sep-04 12:34:41.064 [Actor Thread 136] INFO nextflow.processor.TaskProcessor - [66/7676af] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (87)
Sep-04 12:34:41.064 [Actor Thread 79] INFO nextflow.processor.TaskProcessor - [20/fc65f4] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (65)
Sep-04 12:34:41.064 [Actor Thread 62] INFO nextflow.processor.TaskProcessor - [b4/9426ab] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (73)
Sep-04 12:34:41.065 [Actor Thread 69] INFO nextflow.processor.TaskProcessor - [da/8d3d0a] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (33)
Sep-04 12:34:41.065 [Actor Thread 43] INFO nextflow.processor.TaskProcessor - [ac/9ab8a6] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (78)
Sep-04 12:34:41.066 [Actor Thread 84] INFO nextflow.processor.TaskProcessor - [3e/b25b75] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (17)
Sep-04 12:34:41.066 [Actor Thread 45] INFO nextflow.processor.TaskProcessor - [d1/374fc1] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (68)
Sep-04 12:34:41.067 [Actor Thread 48] INFO nextflow.processor.TaskProcessor - [7c/2af48c] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (93)
Sep-04 12:34:41.067 [Actor Thread 115] INFO nextflow.processor.TaskProcessor - [97/d9ad57] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (92)
Sep-04 12:34:41.067 [Actor Thread 25] INFO nextflow.processor.TaskProcessor - [4c/374654] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (96)
Sep-04 12:34:41.068 [Actor Thread 76] INFO nextflow.processor.TaskProcessor - [0d/ee6582] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (42)
Sep-04 12:34:41.068 [Actor Thread 33] INFO nextflow.processor.TaskProcessor - [db/ab9623] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (84)
Sep-04 12:34:41.068 [Actor Thread 137] INFO nextflow.processor.TaskProcessor - [87/090adc] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (102)
Sep-04 12:34:41.068 [Actor Thread 139] INFO nextflow.processor.TaskProcessor - [bb/528117] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (77)
Sep-04 12:34:41.068 [Actor Thread 41] INFO nextflow.processor.TaskProcessor - [25/e8dd6c] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (89)
Sep-04 12:34:41.068 [Actor Thread 97] INFO nextflow.processor.TaskProcessor - [77/80418e] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (94)
Sep-04 12:34:41.068 [Actor Thread 53] INFO nextflow.processor.TaskProcessor - [1a/6220e2] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (41)
Sep-04 12:34:41.069 [Actor Thread 65] INFO nextflow.processor.TaskProcessor - [84/4a995b] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (115)
Sep-04 12:34:41.069 [Actor Thread 86] INFO nextflow.processor.TaskProcessor - [ea/c36749] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (97)
Sep-04 12:34:41.069 [Actor Thread 27] INFO nextflow.processor.TaskProcessor - [ff/8b5da8] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (90)
Sep-04 12:34:41.069 [Actor Thread 35] INFO nextflow.processor.TaskProcessor - [bf/9a5489] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (110)
Sep-04 12:34:41.070 [Actor Thread 32] INFO nextflow.processor.TaskProcessor - [f0/9baac6] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (80)
Sep-04 12:34:41.070 [Actor Thread 54] INFO nextflow.processor.TaskProcessor - [1e/9c5942] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (54)
Sep-04 12:34:41.070 [Actor Thread 123] INFO nextflow.processor.TaskProcessor - [e5/e6ede4] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (6)
Sep-04 12:34:41.070 [Actor Thread 91] INFO nextflow.processor.TaskProcessor - [8a/35b50d] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (64)
Sep-04 12:34:41.071 [Actor Thread 107] INFO nextflow.processor.TaskProcessor - [89/ca1bdf] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (70)
Sep-04 12:34:41.071 [Actor Thread 64] INFO nextflow.processor.TaskProcessor - [c0/34fffb] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (69)
Sep-04 12:34:41.071 [Actor Thread 55] INFO nextflow.processor.TaskProcessor - [56/5779cc] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (103)
Sep-04 12:34:41.072 [Actor Thread 110] INFO nextflow.processor.TaskProcessor - [92/b64417] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (45)
Sep-04 12:34:41.073 [Actor Thread 113] INFO nextflow.processor.TaskProcessor - [10/3a4b29] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (58)
Sep-04 12:34:41.074 [Actor Thread 88] INFO nextflow.processor.TaskProcessor - [5b/8e0ef7] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (128)
Sep-04 12:34:41.074 [Actor Thread 140] INFO nextflow.processor.TaskProcessor - [c7/6b0c62] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (105)
Sep-04 12:34:41.074 [Actor Thread 128] INFO nextflow.processor.TaskProcessor - [c4/07cb67] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (38)
Sep-04 12:34:41.074 [Actor Thread 143] INFO nextflow.processor.TaskProcessor - [19/8610c6] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (53)
Sep-04 12:34:41.074 [Actor Thread 29] INFO nextflow.processor.TaskProcessor - [d7/1f03db] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (71)
Sep-04 12:34:41.075 [Actor Thread 144] INFO nextflow.processor.TaskProcessor - [b7/ddbbfd] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (99)
Sep-04 12:34:41.075 [Actor Thread 100] INFO nextflow.processor.TaskProcessor - [f0/c2f0f9] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (79)
Sep-04 12:34:41.075 [Actor Thread 120] INFO nextflow.processor.TaskProcessor - [d5/5c9a06] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (91)
Sep-04 12:34:41.075 [Actor Thread 52] INFO nextflow.processor.TaskProcessor - [ba/fa9a40] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (13)
Sep-04 12:34:41.075 [Actor Thread 66] INFO nextflow.processor.TaskProcessor - [3b/7b4015] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (118)
Sep-04 12:34:41.075 [Actor Thread 119] INFO nextflow.processor.TaskProcessor - [0a/398669] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (136)
Sep-04 12:34:41.076 [Actor Thread 126] INFO nextflow.processor.TaskProcessor - [14/247bc2] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (72)
Sep-04 12:34:41.076 [Actor Thread 28] INFO nextflow.processor.TaskProcessor - [3a/8a41f0] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (81)
Sep-04 12:34:41.076 [Actor Thread 44] INFO nextflow.processor.TaskProcessor - [fd/2ac342] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (85)
Sep-04 12:34:41.076 [Actor Thread 101] INFO nextflow.processor.TaskProcessor - [e4/9d64ac] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (66)
Sep-04 12:34:41.076 [Actor Thread 98] INFO nextflow.processor.TaskProcessor - [c3/f4d1da] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (63)
Sep-04 12:34:41.078 [Actor Thread 75] INFO nextflow.processor.TaskProcessor - [d4/87abde] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (127)
Sep-04 12:34:41.078 [Actor Thread 68] INFO nextflow.processor.TaskProcessor - [51/ebf510] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (11)
Sep-04 12:34:41.078 [Actor Thread 103] INFO nextflow.processor.TaskProcessor - [40/25e909] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (124)
Sep-04 12:34:41.078 [Actor Thread 78] INFO nextflow.processor.TaskProcessor - [65/362e4f] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (146)
Sep-04 12:34:41.078 [Actor Thread 57] INFO nextflow.processor.TaskProcessor - [5f/4ccaac] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (134)
Sep-04 12:34:41.078 [Actor Thread 85] INFO nextflow.processor.TaskProcessor - [79/806ecd] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (116)
Sep-04 12:34:41.079 [Actor Thread 141] INFO nextflow.processor.TaskProcessor - [c2/a04c5f] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (122)
Sep-04 12:34:41.079 [Actor Thread 96] INFO nextflow.processor.TaskProcessor - [c5/090726] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (111)
Sep-04 12:34:41.079 [Actor Thread 134] INFO nextflow.processor.TaskProcessor - [e9/89fdab] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (26)
Sep-04 12:34:41.079 [Actor Thread 51] INFO nextflow.processor.TaskProcessor - [37/e34738] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (145)
Sep-04 12:34:41.080 [Actor Thread 133] INFO nextflow.processor.TaskProcessor - [34/50ad2a] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (126)
Sep-04 12:34:41.080 [Actor Thread 71] INFO nextflow.processor.TaskProcessor - [8c/1b0a38] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (123)
Sep-04 12:34:41.080 [Actor Thread 36] INFO nextflow.processor.TaskProcessor - [b3/73c6a6] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (147)
Sep-04 12:34:41.081 [Actor Thread 129] INFO nextflow.processor.TaskProcessor - [74/469462] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (76)
Sep-04 12:34:41.081 [Actor Thread 132] INFO nextflow.processor.TaskProcessor - [5a/cd66c3] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (107)
Sep-04 12:34:41.081 [Actor Thread 121] INFO nextflow.processor.TaskProcessor - [fe/2b3c90] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (16)
Sep-04 12:34:41.081 [Actor Thread 46] INFO nextflow.processor.TaskProcessor - [22/202b27] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (82)
Sep-04 12:34:41.081 [Actor Thread 42] INFO nextflow.processor.TaskProcessor - [c0/53a516] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (104)
Sep-04 12:34:41.081 [Actor Thread 80] INFO nextflow.processor.TaskProcessor - [77/6437d7] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (152)
Sep-04 12:34:41.081 [Actor Thread 72] INFO nextflow.processor.TaskProcessor - [29/56ecf4] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (142)
Sep-04 12:34:41.082 [Actor Thread 30] INFO nextflow.processor.TaskProcessor - [ef/e6b9e8] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (160)
Sep-04 12:34:41.082 [Actor Thread 39] INFO nextflow.processor.TaskProcessor - [e6/40b4c7] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (95)
Sep-04 12:34:41.082 [Actor Thread 131] INFO nextflow.processor.TaskProcessor - [98/87ae90] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (129)
Sep-04 12:34:41.082 [Actor Thread 111] INFO nextflow.processor.TaskProcessor - [98/a8e55e] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (117)
Sep-04 12:34:41.082 [Actor Thread 109] INFO nextflow.processor.TaskProcessor - [ca/4b18a9] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (140)
Sep-04 12:34:41.082 [Actor Thread 127] INFO nextflow.processor.TaskProcessor - [4f/f5fb45] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (139)
Sep-04 12:34:41.082 [Actor Thread 102] INFO nextflow.processor.TaskProcessor - [3b/b423bc] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (37)
Sep-04 12:34:41.083 [Actor Thread 47] INFO nextflow.processor.TaskProcessor - [38/112d21] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (131)
Sep-04 12:34:41.083 [Actor Thread 70] INFO nextflow.processor.TaskProcessor - [57/ba598e] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (39)
Sep-04 12:34:41.083 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [97/e2be50] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (162)
Sep-04 12:34:41.083 [Actor Thread 117] INFO nextflow.processor.TaskProcessor - [32/5cd813] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (154)
Sep-04 12:34:41.084 [Actor Thread 83] INFO nextflow.processor.TaskProcessor - [91/a67e95] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (151)
Sep-04 12:34:41.084 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [01/2105cd] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (150)
Sep-04 12:34:41.084 [Actor Thread 69] INFO nextflow.processor.TaskProcessor - [7a/e3260a] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (165)
Sep-04 12:34:41.085 [Actor Thread 32] INFO nextflow.processor.TaskProcessor - [a0/a0c084] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (182)
Sep-04 12:34:41.086 [Actor Thread 41] INFO nextflow.processor.TaskProcessor - [bc/26ff82] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (177)
Sep-04 12:34:41.086 [Actor Thread 38] INFO nextflow.processor.TaskProcessor - [c5/ca10f1] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (34)
Sep-04 12:34:41.086 [Actor Thread 122] INFO nextflow.processor.TaskProcessor - [b1/1ddaa5] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (158)
Sep-04 12:34:41.086 [Actor Thread 135] INFO nextflow.processor.TaskProcessor - [21/4449aa] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (101)
Sep-04 12:34:41.086 [Actor Thread 35] INFO nextflow.processor.TaskProcessor - [6e/7e1e26] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (178)
Sep-04 12:34:41.087 [Actor Thread 90] INFO nextflow.processor.TaskProcessor - [31/0b6c8a] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (83)
Sep-04 12:34:41.088 [Actor Thread 40] INFO nextflow.processor.TaskProcessor - [4c/fb2f1b] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (156)
Sep-04 12:34:41.088 [Actor Thread 17] INFO nextflow.processor.TaskProcessor - [60/ad5e4d] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (169)
Sep-04 12:34:41.088 [Actor Thread 73] INFO nextflow.processor.TaskProcessor - [35/95d6ff] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (130)
Sep-04 12:34:41.088 [Actor Thread 76] INFO nextflow.processor.TaskProcessor - [2d/f51afb] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (174)
Sep-04 12:34:41.088 [Actor Thread 107] INFO nextflow.processor.TaskProcessor - [39/3a630c] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (192)
Sep-04 12:34:41.088 [Actor Thread 67] INFO nextflow.processor.TaskProcessor - [d5/2a16e3] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (25)
Sep-04 12:34:41.088 [Actor Thread 116] INFO nextflow.processor.TaskProcessor - [fd/02c393] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (144)
Sep-04 12:34:41.089 [Actor Thread 25] INFO nextflow.processor.TaskProcessor - [c7/dcb4dd] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (173)
Sep-04 12:34:41.089 [Actor Thread 137] INFO nextflow.processor.TaskProcessor - [c5/ac4b79] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (188)
Sep-04 12:34:41.089 [Actor Thread 104] INFO nextflow.processor.TaskProcessor - [d9/8fe70e] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (9)
Sep-04 12:34:41.089 [Actor Thread 62] INFO nextflow.processor.TaskProcessor - [ce/10844c] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (159)
Sep-04 12:34:41.089 [Actor Thread 26] INFO nextflow.processor.TaskProcessor - [55/0cd969] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (86)
Sep-04 12:34:41.089 [Actor Thread 54] INFO nextflow.processor.TaskProcessor - [f2/23d0dc] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (185)
Sep-04 12:34:41.089 [Actor Thread 87] INFO nextflow.processor.TaskProcessor - [a0/164ec2] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (138)
Sep-04 12:34:41.089 [Actor Thread 118] INFO nextflow.processor.TaskProcessor - [9e/7683ff] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (114)
Sep-04 12:34:41.090 [Actor Thread 56] INFO nextflow.processor.TaskProcessor - [30/9124a8] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (121)
Sep-04 12:34:41.090 [Actor Thread 48] INFO nextflow.processor.TaskProcessor - [ac/80c254] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (196)
Sep-04 12:34:41.091 [Actor Thread 55] INFO nextflow.processor.TaskProcessor - [5a/226be8] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (199)
Sep-04 12:34:41.091 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [d5/2c8aaa] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (170)
Sep-04 12:34:41.092 [Actor Thread 33] INFO nextflow.processor.TaskProcessor - [58/edc2fb] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (184)
Sep-04 12:34:41.092 [Actor Thread 106] INFO nextflow.processor.TaskProcessor - [61/ae059d] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (119)
Sep-04 12:34:41.093 [Actor Thread 60] INFO nextflow.processor.TaskProcessor - [94/010cad] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (113)
Sep-04 12:34:41.093 [Actor Thread 53] INFO nextflow.processor.TaskProcessor - [83/9b0cfa] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (183)
Sep-04 12:34:41.093 [Actor Thread 9] INFO nextflow.processor.TaskProcessor - [80/dc1106] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (197)
Sep-04 12:34:41.094 [Actor Thread 130] INFO nextflow.processor.TaskProcessor - [57/977981] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (141)
Sep-04 12:34:41.094 [Actor Thread 113] INFO nextflow.processor.TaskProcessor - [29/5780a3] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (202)
Sep-04 12:34:41.094 [Actor Thread 89] INFO nextflow.processor.TaskProcessor - [4b/f988d6] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (137)
Sep-04 12:34:41.094 [Actor Thread 74] INFO nextflow.processor.TaskProcessor - [78/40ee57] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (120)
Sep-04 12:34:41.095 [Actor Thread 119] INFO nextflow.processor.TaskProcessor - [14/5c6c9f] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (204)
Sep-04 12:34:41.095 [Actor Thread 16] INFO nextflow.processor.TaskProcessor - [70/407536] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (180)
Sep-04 12:34:41.096 [Actor Thread 37] INFO nextflow.processor.TaskProcessor - [02/14bcc5] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (112)
Sep-04 12:34:41.096 [Actor Thread 105] INFO nextflow.processor.TaskProcessor - [6a/2311fd] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (125)
Sep-04 12:34:41.096 [Actor Thread 97] INFO nextflow.processor.TaskProcessor - [7e/4e94b6] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (181)
Sep-04 12:34:41.097 [Actor Thread 64] INFO nextflow.processor.TaskProcessor - [c3/1599f0] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (193)
Sep-04 12:34:41.098 [Actor Thread 63] INFO nextflow.processor.TaskProcessor - [64/66744b] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (109)
Sep-04 12:34:41.098 [Actor Thread 124] INFO nextflow.processor.TaskProcessor - [b8/4f4095] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (62)
Sep-04 12:34:41.098 [Actor Thread 29] INFO nextflow.processor.TaskProcessor - [d1/847242] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (207)
Sep-04 12:34:41.099 [Actor Thread 12] INFO nextflow.processor.TaskProcessor - [6e/e72d81] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (198)
Sep-04 12:34:41.100 [Actor Thread 15] INFO nextflow.processor.TaskProcessor - [41/e2e1c0] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (190)
Sep-04 12:34:41.101 [Actor Thread 91] INFO nextflow.processor.TaskProcessor - [17/7fab2c] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (187)
Sep-04 12:34:41.102 [Actor Thread 79] INFO nextflow.processor.TaskProcessor - [c7/f3e6ae] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (161)
Sep-04 12:34:41.102 [Actor Thread 114] INFO nextflow.processor.TaskProcessor - [2d/53b54b] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (43)
Sep-04 12:34:41.102 [Actor Thread 123] INFO nextflow.processor.TaskProcessor - [7d/0bd7ec] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (186)
Sep-04 12:34:41.102 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [f8/9caca4] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (209)
Sep-04 12:34:41.102 [Actor Thread 27] INFO nextflow.processor.TaskProcessor - [1e/8a06d5] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (191)
Sep-04 12:34:41.103 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [2d/34b23e] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (194)
Sep-04 12:34:41.104 [Actor Thread 50] INFO nextflow.processor.TaskProcessor - [b3/3ee9fd] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (108)
Sep-04 12:34:41.105 [Actor Thread 93] INFO nextflow.processor.TaskProcessor - [f8/866ccd] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (100)
Sep-04 12:34:41.106 [Actor Thread 140] INFO nextflow.processor.TaskProcessor - [b6/171a88] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (200)
Sep-04 12:34:41.106 [Actor Thread 52] INFO nextflow.processor.TaskProcessor - [86/046bcb] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (203)
Sep-04 12:34:41.107 [Actor Thread 94] INFO nextflow.processor.TaskProcessor - [1e/a6a777] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (164)
Sep-04 12:34:41.108 [Actor Thread 115] INFO nextflow.processor.TaskProcessor - [8d/13b860] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (172)
Sep-04 12:34:41.111 [Actor Thread 92] INFO nextflow.processor.TaskProcessor - [71/140184] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (75)
Sep-04 12:34:41.113 [Actor Thread 43] INFO nextflow.processor.TaskProcessor - [17/126c8e] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (166)
Sep-04 12:34:41.113 [Actor Thread 101] INFO nextflow.processor.TaskProcessor - [50/5036de] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (210)
Sep-04 12:34:41.113 [Actor Thread 100] INFO nextflow.processor.TaskProcessor - [98/c7185d] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (211)
Sep-04 12:34:41.113 [Actor Thread 82] INFO nextflow.processor.TaskProcessor - [45/51d611] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (67)
Sep-04 12:34:41.114 [Actor Thread 61] INFO nextflow.processor.TaskProcessor - [cb/09a45d] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (132)
Sep-04 12:34:41.114 [Actor Thread 84] INFO nextflow.processor.TaskProcessor - [22/f67162] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (163)
Sep-04 12:34:41.115 [Actor Thread 99] INFO nextflow.processor.TaskProcessor - [0f/12503b] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (106)
Sep-04 12:34:41.115 [Actor Thread 45] INFO nextflow.processor.TaskProcessor - [33/943bfd] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (167)
Sep-04 12:34:41.117 [Actor Thread 44] INFO nextflow.processor.TaskProcessor - [c7/98caac] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (212)
Sep-04 12:34:41.117 [Actor Thread 144] INFO nextflow.processor.TaskProcessor - [65/86496b] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (208)
Sep-04 12:34:41.120 [Actor Thread 110] INFO nextflow.processor.TaskProcessor - [da/7c2a0c] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (195)
Sep-04 12:34:41.123 [Actor Thread 58] INFO nextflow.processor.TaskProcessor - [07/3b4de6] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (148)
Sep-04 12:34:41.123 [Actor Thread 66] INFO nextflow.processor.TaskProcessor - [6f/90ef84] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (206)
Sep-04 12:34:41.125 [Actor Thread 125] INFO nextflow.processor.TaskProcessor - [0c/1b90dd] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (98)
Sep-04 12:34:41.126 [Actor Thread 59] INFO nextflow.processor.TaskProcessor - [a7/5726b2] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (23)
Sep-04 12:34:41.127 [Actor Thread 145] INFO nextflow.processor.TaskProcessor - [69/90fadd] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (10)
Sep-04 12:34:41.131 [Actor Thread 20] INFO nextflow.processor.TaskProcessor - [d9/8c4746] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (168)
Sep-04 12:34:41.131 [Actor Thread 49] INFO nextflow.processor.TaskProcessor - [5b/604995] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (143)
Sep-04 12:34:41.137 [Actor Thread 34] INFO nextflow.processor.TaskProcessor - [81/1c30ea] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (55)
Sep-04 12:34:41.137 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [6a/f47092] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (171)
Sep-04 12:34:41.139 [Actor Thread 65] INFO nextflow.processor.TaskProcessor - [e4/ade8d3] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (176)
Sep-04 12:34:41.141 [Actor Thread 142] INFO nextflow.processor.TaskProcessor - [7e/cd620a] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (60)
Sep-04 12:34:41.142 [Actor Thread 95] INFO nextflow.processor.TaskProcessor - [c0/f688e2] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (133)
Sep-04 12:34:41.147 [Actor Thread 138] INFO nextflow.processor.TaskProcessor - [a3/83c26d] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (135)
Sep-04 12:34:41.149 [Actor Thread 120] INFO nextflow.processor.TaskProcessor - [99/8281a9] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (205)
Sep-04 12:34:41.149 [Actor Thread 112] INFO nextflow.processor.TaskProcessor - [4a/43f1cf] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (153)
Sep-04 12:34:41.157 [Actor Thread 77] INFO nextflow.processor.TaskProcessor - [01/3c104b] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (149)
Sep-04 12:34:41.164 [Actor Thread 86] INFO nextflow.processor.TaskProcessor - [54/18b678] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (179)
Sep-04 12:34:41.169 [Actor Thread 31] INFO nextflow.processor.TaskProcessor - [bf/2d5bd6] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (22)
Sep-04 12:34:41.169 [Actor Thread 23] INFO nextflow.processor.TaskProcessor - [94/eab7f9] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (157)
Sep-04 12:34:41.178 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [51/d36b0b] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (175)
Sep-04 12:34:41.180 [Actor Thread 139] INFO nextflow.processor.TaskProcessor - [e2/0284f0] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (189)
Sep-04 12:34:41.216 [Actor Thread 136] INFO nextflow.processor.TaskProcessor - [9d/ce60a8] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (155)
Sep-04 12:34:41.222 [Actor Thread 128] INFO nextflow.processor.TaskProcessor - [ce/0f2871] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (201)
Sep-04 12:34:41.238 [Actor Thread 81] INFO nextflow.processor.TaskProcessor - [b2/7e1cfa] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:SCAR (88)
Sep-04 12:34:41.322 [Actor Thread 138] INFO nextflow.processor.TaskProcessor - [fb/b074a3] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (13)
Sep-04 12:34:41.325 [Actor Thread 66] INFO nextflow.processor.TaskProcessor - [5a/6332cd] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (5)
Sep-04 12:34:41.328 [Actor Thread 99] INFO nextflow.processor.TaskProcessor - [fb/20e002] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (25)
Sep-04 12:34:41.329 [Actor Thread 49] INFO nextflow.processor.TaskProcessor - [e9/4834f8] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (16)
Sep-04 12:34:41.329 [Actor Thread 20] INFO nextflow.processor.TaskProcessor - [ab/e69d1a] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (10)
Sep-04 12:34:41.330 [Actor Thread 59] INFO nextflow.processor.TaskProcessor - [bf/fe8679] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (23)
Sep-04 12:34:41.330 [Actor Thread 142] INFO nextflow.processor.TaskProcessor - [dd/9ec4ee] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (15)
Sep-04 12:34:41.330 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [ce/46e3a5] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (6)
Sep-04 12:34:41.331 [Actor Thread 98] INFO nextflow.processor.TaskProcessor - [bc/6e0288] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (19)
Sep-04 12:34:41.331 [Actor Thread 100] INFO nextflow.processor.TaskProcessor - [e5/d8a7f6] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (24)
Sep-04 12:34:41.332 [Actor Thread 86] INFO nextflow.processor.TaskProcessor - [8f/0c303b] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (9)
Sep-04 12:34:41.332 [Actor Thread 145] INFO nextflow.processor.TaskProcessor - [72/079848] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (22)
Sep-04 12:34:41.332 [Actor Thread 23] INFO nextflow.processor.TaskProcessor - [60/c7cecc] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (2)
Sep-04 12:34:41.335 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [bd/440ebc] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (14)
Sep-04 12:34:41.336 [Actor Thread 31] INFO nextflow.processor.TaskProcessor - [7e/da9231] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (8)
Sep-04 12:34:41.336 [Actor Thread 120] INFO nextflow.processor.TaskProcessor - [1f/97c680] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (12)
Sep-04 12:34:41.336 [Actor Thread 112] INFO nextflow.processor.TaskProcessor - [b9/8f7d4e] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (7)
Sep-04 12:34:41.338 [Actor Thread 77] INFO nextflow.processor.TaskProcessor - [20/bed371] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (4)
Sep-04 12:34:41.342 [Actor Thread 81] INFO nextflow.processor.TaskProcessor - [ed/3e7c41] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (1)
Sep-04 12:34:41.342 [Actor Thread 65] INFO nextflow.processor.TaskProcessor - [b9/7b671e] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (17)
Sep-04 12:34:41.342 [Actor Thread 125] INFO nextflow.processor.TaskProcessor - [8d/61ad33] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (21)
Sep-04 12:34:41.343 [Actor Thread 58] INFO nextflow.processor.TaskProcessor - [37/e3f27f] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (18)
Sep-04 12:34:41.344 [Actor Thread 128] INFO nextflow.processor.TaskProcessor - [85/acf82d] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (3)
Sep-04 12:34:41.388 [Actor Thread 95] INFO nextflow.processor.TaskProcessor - [90/0eadc6] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (11)
Sep-04 12:34:41.447 [Actor Thread 34] INFO nextflow.processor.TaskProcessor - [8e/9d4f9d] Cached process > build_atlas:Integrate_datasets:REMOVE_AMBIENT_RNA:MERGE_SCAR (20)
Sep-04 12:34:41.506 [Actor Thread 95] INFO nextflow.processor.TaskProcessor - [4b/13fb12] Cached process > build_atlas:Integrate_datasets:Concat_datasets (Concat_datasets)
Sep-04 12:34:41.528 [Actor Thread 136] INFO nextflow.processor.TaskProcessor - [d0/9143f9] Cached process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SPLIT_ADATA_BY_BATCH (1)
Sep-04 12:34:41.546 [Actor Thread 31] INFO nextflow.processor.TaskProcessor - [c0/dbd2ca] Cached process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE (13)
Sep-04 12:34:41.547 [Actor Thread 142] INFO nextflow.processor.TaskProcessor - [c3/ebead9] Cached process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE (8)
Sep-04 12:34:41.548 [Actor Thread 136] INFO nextflow.processor.TaskProcessor - [87/bc85d1] Cached process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE (1)
Sep-04 12:34:41.548 [Actor Thread 125] INFO nextflow.processor.TaskProcessor - [57/ce3fa2] Cached process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE (4)
Sep-04 12:34:41.549 [Actor Thread 138] INFO nextflow.processor.TaskProcessor - [2f/9c3217] Cached process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE (25)
Sep-04 12:34:41.549 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [13/af606c] Cached process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE (12)
Sep-04 12:34:41.551 [Actor Thread 145] INFO nextflow.processor.TaskProcessor - [1b/776d5c] Cached process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE (7)
Sep-04 12:34:41.552 [Actor Thread 83] INFO nextflow.processor.TaskProcessor - [c4/8b90ab] Cached process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE (96)
Sep-04 12:34:41.553 [Actor Thread 106] INFO nextflow.processor.TaskProcessor - [b7/c5e07a] Cached process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE (70)
Sep-04 12:34:41.553 [Actor Thread 54] INFO nextflow.processor.TaskProcessor - [60/238c5e] Cached process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE (76)
Sep-04 12:34:41.553 [Actor Thread 82] INFO nextflow.processor.TaskProcessor - [19/23d0f0] Cached process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE (33)
Sep-04 12:34:41.554 [Actor Thread 93] INFO nextflow.processor.TaskProcessor - [dc/abe42d] Cached process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE (42)
Sep-04 12:34:41.554 [Actor Thread 123] INFO nextflow.processor.TaskProcessor - [02/2744b2] Cached process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE (47)
Sep-04 12:34:41.555 [Actor Thread 12] INFO nextflow.processor.TaskProcessor - [d0/cd8d9e] Cached process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE (35)
Sep-04 12:34:41.555 [Actor Thread 34] INFO nextflow.processor.TaskProcessor - [2b/a71cea] Cached process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE (2)
Sep-04 12:34:41.555 [Actor Thread 58] INFO nextflow.processor.TaskProcessor - [79/70c6f7] Cached process > build_atlas:Integrate_datasets:CELL_CYCLE_PHASE:SCORE_CELL_CYCLE (6)