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Makefile
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ARCH=$(shell uname -s)
#for some strange reasons, python modules compiled with f2py do not work when using a separate build directory
OBJDIR := src/
SRCDIR := src/
BINDIR := bin/
LIBDIR := lib/
PYTDIR := python/pyPamtra
PYINSTDIR := ~/lib/python/
gitHash := $(shell git show -s --pretty=format:%H)
gitVersion := $(shell git describe --tags)-$(shell git name-rev --name-only HEAD)
NCCONF = $(shell which nf-config || which nc-config) # on newer Ubuntu version C and Fortran libraries have their own configure scripts
F2PY := $(shell which f2py || which f2py3 || which f2py2.7) # on newer Ubuntu systems, only f2py2.7 is available
FC= gfortran #ifort
CC= gcc #icc
FCFLAGS=-c -fPIC -cpp -J$(OBJDIR) -I$(OBJDIR) #FCFLAGS=-c -fPIC -Wunused -cpp -J$(OBJDIR) -I$(OBJDIR)
#FCFLAGS=-g -c -fPIC -Wunused -O0 -cpp -J$(OBJDIR) -I$(OBJDIR)
NCFLAGS := $(shell $(NCCONF) --fflags)
LFLAGS := -L/usr/lib/ -L/usr/local/lib/ -L/opt/homebrew/lib/ -llapack -L$(LIBDIR) -L../$(LIBDIR) -lblas -lz -lfftw3
LDFLAGS := $(shell $(NCCONF) --flibs)
# it's messi but needed for ubuntu 16.04
to_remove:=-Wl,-Bsymbolic-functions -Wl,-z,relro
LDFLAGS := $(subst $(to_remove),,$(LDFLAGS))
# compilation depends on the order of objects in OBJECTS.
# make sure that dependencies are listed first.
OBJECTS=kinds.o \
nan.o \
vars_index.o \
report_module.o \
rt_utilities.o \
settings.o \
constants.o \
zlib_stuff.o \
mod_fastem4_coef.o \
gasabs_module.o \
conversions.o \
descriptor_file.o \
vars_atmosphere.o \
vars_rt.o \
vars_hydroFullSpec.o \
mod_io_strings.o \
getopt.o \
parse_options.o \
radmat.o \
convolution.o \
get_gasabs.o\
vars_output.o \
azimuth_emissivity_module.o \
hyperbolic_step.o \
slope_variance.o \
reflection_correction_module.o \
large_scale_correction_module.o \
small_scale_correction_module.o \
foam_utility_module.o \
liu.o \
fresnel.o \
fastemx.o \
tessem2.o \
ocean_sfc_optics.o \
mod_mwatlas_nt_bin.o \
telsem2.o \
land_sfc_optics.o \
sfc_optics.o \
sfc_matrices.o \
run_rt.o \
scat_utilities.o \
mpm93.o \
eps_water.o \
mie_scat_utilities.o \
mie_spheres.o \
scatdb.o \
dda_db_liu.o \
dda_db_hong.o \
hongdb.o \
dia2vel.o \
rescale_spectra.o \
radar_moments.o \
radar_spectrum.o \
radar_spectral_broadening.o \
radar_simulator.o \
rosen98_gasabs.o \
surface.o \
eps_ice.o \
eps_mix.o \
equcom.o \
land_emis_ssmi.o \
equare.o \
ref_water.o \
ref_ice.o \
e_sat_gg_water.o \
interpolation.o \
collect_output.o \
save_active.o \
random.o \
rt4.o \
radtran4.o \
radintg4.o \
radscat4.o \
drop_size_dist.o \
make_dist.o \
make_dist_param.o \
make_mass_size.o \
calc_moment.o \
make_soft_spheroid.o \
check_print.o \
tmatrix.o \
rayleigh_gans.o \
scatProperties.o \
hydrometeor_extinction.o \
scatcnv.o \
tmatrix_lpq.o \
get_scat_mat.o \
refractive_index.o \
dsort.o \
rho_air.o \
viscosity_air.o\
versionNumber.auto.o \
smooth_savitzky_golay.o \
radar_hildebrand_sekhon.o \
tmatrix_amplq.lp.o \
deallocate_everything.o
OBJECTS_NC=write_nc_results.o
FOBJECTS=$(addprefix $(OBJDIR),$(OBJECTS))
FOBJECTS_NC=$(addprefix $(OBJDIR),$(OBJECTS_NC))
BIN=pamtra
all: pamtra py
warning:
ifndef PAMTRA_DATADIR
@echo "########################################################"
@echo "Do not forget to define PAMTRA_DATADIR environment variable"
@echo "########################################################"
endif
print-% : ; @echo $* = $($*)
pamtra: FCFLAGS += -O2
pamtra: NCFLAGS += -O2
pamtra: warning $(FOBJECTS) $(BINDIR)$(BIN) | $(BINDIR)
$(OBJDIR)versionNumber.auto.o: .git/HEAD .git/index
echo "!edit in makefile only!" > $(SRCDIR)versionNumber.auto.f90
echo "subroutine versionNumber(gitVersion,gitHash)" >> $(SRCDIR)versionNumber.auto.f90
echo "implicit none" >> $(SRCDIR)versionNumber.auto.f90
echo "character(40), intent(out) ::gitVersion,gitHash" >> $(SRCDIR)versionNumber.auto.f90
echo "gitVersion = '$(gitVersion)'" >> $(SRCDIR)versionNumber.auto.f90
echo "gitHash = '$(gitHash)'" >> $(SRCDIR)versionNumber.auto.f90
echo "return" >> $(SRCDIR)versionNumber.auto.f90
echo "end subroutine versionNumber" >> $(SRCDIR)versionNumber.auto.f90
$(FC) $(FCFLAGS) $(SRCDIR)versionNumber.auto.f90 -o $(OBJDIR)versionNumber.auto.o #otherwise error on first make run!
$(OBJDIR):
mkdir -p $(OBJDIR)
$(LIBDIR):
mkdir -p $(LIBDIR)
$(BINDIR):
mkdir -p $(BINDIR)
$(BINDIR)$(BIN): $(FOBJECTS) $(FOBJECTS_NC) | $(BINDIR)
$(FC) -I$(OBJDIR) -o $(BINDIR)$(BIN) $(SRCDIR)pamtra.f90 $(FOBJECTS) $(FOBJECTS_NC) $(LFLAGS) $(LDFLAGS)
$(OBJDIR)scatdb.o: $(SRCDIR)scatdb.c | $(OBJDIR)
$(CC) -O -fPIC -c $< -o $@
$(OBJDIR)%.o: $(SRCDIR)%.f90 | $(OBJDIR)
$(FC) $(FCFLAGS) $< -o $@
$(OBJDIR)%.o: $(SRCDIR)%.f | $(OBJDIR)
$(FC) $(FCFLAGS) $< -o $@
$(OBJDIR)write_nc_results.o: $(SRCDIR)write_nc_results.f90 | $(OBJDIR)
$(FC) $(FCFLAGS) $(NCFLAGS) $< -o $@
pamtraDebug: FCFLAGS += -g -fbacktrace -fbounds-check
pamtraDebug: LFLAGS += -g -fbacktrace -fbounds-check
pamtraDebug: pamtra
@echo ""
@echo "####################################################################################"
@echo "start debugging with:"
@echo "gdb ./pamtra"
@echo "run -n namelist -p profile ..."
@echo "or with valgrind:"
@echo "valgrind --leak-check=yes ./pamtra ..."
@echo "####################################################################################"
pamtraProfile: FCFLAGS += -pg
pamtraProfile: LFLAGS += -pg
pamtraProfile: pamtra
@echo ""
@echo "####################################################################################"
@echo "analyse gprof output with"
@echo "gprof ./pamtra | gprof2dot.py | dot -Tpng -o output_old.png"
@echo "####################################################################################"
pyProfile: LFLAGS += -DF2PY_REPORT_ATEXIT
pyProfile: py
@echo ""
@echo "####################################################################################"
@echo "performance report displayed at exit of python"
@echo "####################################################################################"
pyDebug: LFLAGS += -g -fbacktrace -fbounds-check
pyDebug: LFLAGS += --debug-capi
pyDebug: py
@echo ""
@echo "####################################################################################"
@echo "This causes the extension modules to print detailed information while in operation. "
@echo "####################################################################################"
$(OBJDIR)pypamtralib.pyf: $(FOBJECTS)
@echo "####################################################################################"
@echo "Note there is a bug in numpy 1.10.1, intent in or out is not recognized"
@echo "Note there is a bug in numpy 1.12.0, length of arrays is not recognized by f2py"
@echo "####################################################################################"
$(F2PY) --overwrite-signature -m pyPamtraLib -h $(OBJDIR)pypamtralib.pyf $(SRCDIR)report_module.f90 $(SRCDIR)vars_index.f90 $(SRCDIR)viscosity_air.f90 $(SRCDIR)convolution.f90 $(SRCDIR)deallocate_everything.f90 $(SRCDIR)vars_output.f90 $(SRCDIR)vars_atmosphere.f90 $(SRCDIR)settings.f90 $(SRCDIR)descriptor_file.f90 $(SRCDIR)vars_hydroFullSpec.f90 $(SRCDIR)radar_moments.f90 $(SRCDIR)eps_water.f90 $(SRCDIR)radar_hildebrand_sekhon.f90 $(SRCDIR)dia2vel.f90 $(SRCDIR)pyPamtraLib.f90
py: FCFLAGS += -O2
py: NCFLAGS += -O2
py: $(PYTDIR)pyPamtraLib.so
$(PYTDIR)pyPamtraLib.so: $(SRCDIR)pyPamtraLib.f90 $(OBJDIR)pypamtralib.pyf $(FOBJECTS) | $(BINDIR)
cd $(OBJDIR) && $(F2PY) $(LFLAGS) -c --fcompiler=gnu95 ../$(OBJDIR)pypamtralib.pyf $(OBJECTS) ../$(SRCDIR)pyPamtraLib.f90
mv $(OBJDIR)/pyPamtraLib*so $(PYTDIR)
cp $(PYTDIR)/pamtra.py $(BINDIR)
pyinstall: warning py
mkdir -p $(PYINSTDIR)
cp -r $(PYTDIR) $(PYINSTDIR)
cp tools/pyRadarMoments/radarMoments.py $(PYINSTDIR)
clean:
-rm -f $(OBJDIR)*.o
-rm -f $(OBJDIR)*.mod
-rm -f $(BINDIR)pamtra*
-rm -f $(PYTDIR)*.so
htmldoc:
cd doc && $(MAKE) html