diff --git a/_images/gui.gif b/_images/gui.gif new file mode 100644 index 0000000..a4e2b6b Binary files /dev/null and b/_images/gui.gif differ diff --git a/_sources/usage.rst.txt b/_sources/usage.rst.txt index a8e86ac..db2aeaa 100644 --- a/_sources/usage.rst.txt +++ b/_sources/usage.rst.txt @@ -3,13 +3,36 @@ Quickstart ============ -To get started immediately, run :code:`interface_cmd.py` to activate a command line interface (CLI). +Requirements +----------------- +* Python 3.12.0 +* Dependencies can be installed via :code:`pip install -r requirements.txt` + + +Graphical User Interface +----------------------------- + +Provides a graphical user interface in a web app. + +To run it locally: + +blocks:: + +> streamlit run interface_gui.py + +.. image:: imgs/gui.gif + :target: _images/gui.gif + +Command Line - Interactive +-------------------------------- + +Provides an interactive prompt environment to set the simulation settings. + +To get started run :code:`interface_cmd.py` to activate a command line interface (CLI). -Run the simulator ------------- * :code:`simulate` This command is used to run the simulation with the assigned settings. -* Using just :code:`simulate` generates a default scenario (`defaults `_). +* Using just :code:`simulate` generates a default scenario. * Predefined scenarios are available in the :code:`./Scenarios/` folder. To use one of them, use :code:`load -sn ` and :code:`simulate`. * Results are stored in the directory :code:`./SimulationResults/` @@ -18,4 +41,14 @@ Plot the results * :code:`plot` This command is used to generate plots from the simulation results. * :code:`plot -h` lists the arguments that can be used with :code:`plot ` * :code:`plot` with no arguments generates and saves all figures without displaying them. -* :code:`plot --all` both generates and displays all figures. \ No newline at end of file +* :code:`plot --all` both generates and displays all figures. + +.. image:: imgs/cmd.gif + :target: _images/cmd.gif + +Command Line - single command +---------------------------------- +Simulation settings are defined in a single command line. + +Start by running :code:`interface_cli.py [OPTIONS]`. + diff --git a/searchindex.js b/searchindex.js index 574545f..28eea63 100644 --- a/searchindex.js +++ b/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["_autosummary/pymgipsim", 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"module-pymgipsim.VirtualPatient.Models.Multiscale"], [140, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight"], [141, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.CONSTANTS"], [142, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Inputs"], [146, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Model"], [148, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Parameters"], [150, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.States"], [151, "module-pymgipsim.VirtualPatient.Models.Physact"], [152, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate"], [153, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.CONSTANTS"], [154, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Inputs"], [156, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Model"], [158, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Parameters"], [160, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.States"], [162, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp"], [163, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.CONSTANTS"], [164, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Inputs"], [166, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Model"], [168, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Parameters"], [170, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.States"], [172, "module-pymgipsim.VirtualPatient.Models.T1DM"], [173, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka"], [174, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS"], [181, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs"], [187, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model"], [189, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Parameters"], [191, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.States"], [192, "module-pymgipsim.VirtualPatient.Models.T1DM.IVP"], [193, "module-pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS"], [224, "module-pymgipsim.VirtualPatient.Models.T1DM.IVP.Inputs"], [230, "module-pymgipsim.VirtualPatient.Models.T1DM.IVP.Model"], [232, "module-pymgipsim.VirtualPatient.Models.T1DM.IVP.Parameters"], [234, "module-pymgipsim.VirtualPatient.Models.T1DM.IVP.States"], [235, "module-pymgipsim.VirtualPatient.VirtualPatient"], [237, "module-pymgipsim.generate_plots"]], "pymgipsim": [[0, "module-pymgipsim"]], "pymgipsim.controllers": [[1, "module-pymgipsim.Controllers"]], "pymgipsim.controllers.openloop": [[2, "module-pymgipsim.Controllers.OpenLoop"]], "pymgipsim.controllers.openloop.controller": [[3, "module-pymgipsim.Controllers.OpenLoop.controller"]], "controller (class in pymgipsim.controllers.openloop.controller)": [[4, "pymgipsim.Controllers.OpenLoop.controller.Controller"]], "pymgipsim.controllers.sapt": [[5, "module-pymgipsim.Controllers.SAPT"]], "pymgipsim.controllers.sapt.controller": [[6, "module-pymgipsim.Controllers.SAPT.controller"]], "controller (class in pymgipsim.controllers.sapt.controller)": [[7, "pymgipsim.Controllers.SAPT.controller.Controller"]], "pymgipsim.controllers.stochasticopenloop": [[8, "module-pymgipsim.Controllers.StochasticOpenLoop"]], "pymgipsim.controllers.stochasticopenloop.controller": [[9, "module-pymgipsim.Controllers.StochasticOpenLoop.controller"]], "controller (class in pymgipsim.controllers.stochasticopenloop.controller)": [[10, "pymgipsim.Controllers.StochasticOpenLoop.controller.Controller"]], "pymgipsim.controllers.parser": [[11, "module-pymgipsim.Controllers.parser"]], "controller_args_to_scenario() (in module pymgipsim.controllers.parser)": [[12, "pymgipsim.Controllers.parser.controller_args_to_scenario"]], "generate_controller_settings_parser() (in module pymgipsim.controllers.parser)": [[13, "pymgipsim.Controllers.parser.generate_controller_settings_parser"]], "get_controller_names() (in module pymgipsim.controllers.parser)": [[14, "pymgipsim.Controllers.parser.get_controller_names"]], "pymgipsim.inputgeneration": [[15, "module-pymgipsim.InputGeneration"]], "pymgipsim.inputgeneration.activity_settings": [[16, "module-pymgipsim.InputGeneration.activity_settings"]], "activity_args_to_scenario() (in module pymgipsim.inputgeneration.activity_settings)": [[17, "pymgipsim.InputGeneration.activity_settings.activity_args_to_scenario"]], "generate_activities() (in module pymgipsim.inputgeneration.activity_settings)": [[18, "pymgipsim.InputGeneration.activity_settings.generate_activities"]], "time_str_to_float() (in module pymgipsim.inputgeneration.activity_settings)": [[19, "pymgipsim.InputGeneration.activity_settings.time_str_to_float"]], "pymgipsim.inputgeneration.carb_energy_settings": [[20, "module-pymgipsim.InputGeneration.carb_energy_settings"]], "generate_carb_absorption() (in module pymgipsim.inputgeneration.carb_energy_settings)": [[21, "pymgipsim.InputGeneration.carb_energy_settings.generate_carb_absorption"]], "make_carb_settings() (in module pymgipsim.inputgeneration.carb_energy_settings)": [[22, "pymgipsim.InputGeneration.carb_energy_settings.make_carb_settings"]], "pymgipsim.inputgeneration.energy_expenditure_settings": [[23, "module-pymgipsim.InputGeneration.energy_expenditure_settings"]], "generate_energy_expenditure() (in module pymgipsim.inputgeneration.energy_expenditure_settings)": [[24, "pymgipsim.InputGeneration.energy_expenditure_settings.generate_energy_expenditure"]], "generate_carb_magnitudes_singlescale() (in module pymgipsim.inputgeneration.generate_carb_signal)": [[25, "pymgipsim.InputGeneration.generate_carb_signal.generate_carb_magnitudes_singlescale"], [30, "pymgipsim.InputGeneration.generate_carb_signal.generate_carb_magnitudes_singlescale"]], "pymgipsim.inputgeneration.generate_carb_signal": [[25, "module-pymgipsim.InputGeneration.generate_carb_signal"]], "calculate_meal_time_samples() (in module pymgipsim.inputgeneration.generate_carb_signal)": [[26, "pymgipsim.InputGeneration.generate_carb_signal.calculate_meal_time_samples"]], "calculate_snack_time_samples() (in module pymgipsim.inputgeneration.generate_carb_signal)": [[27, "pymgipsim.InputGeneration.generate_carb_signal.calculate_snack_time_samples"]], "generate_carb_events() (in module pymgipsim.inputgeneration.generate_carb_signal)": [[28, "pymgipsim.InputGeneration.generate_carb_signal.generate_carb_events"]], "generate_carb_magnitudes_multiscale() (in module pymgipsim.inputgeneration.generate_carb_signal)": [[29, "pymgipsim.InputGeneration.generate_carb_signal.generate_carb_magnitudes_multiscale"]], "generate_carb_ranges_multiscale() (in module pymgipsim.inputgeneration.generate_carb_signal)": [[31, "pymgipsim.InputGeneration.generate_carb_signal.generate_carb_ranges_multiscale"]], "pymgipsim.inputgeneration.generate_multiscale_inputs": [[32, "module-pymgipsim.InputGeneration.generate_multiscale_inputs"]], "generate_bodyweight_events() (in module pymgipsim.inputgeneration.generate_multiscale_inputs)": [[33, "pymgipsim.InputGeneration.generate_multiscale_inputs.generate_bodyweight_events"]], "generate_multiscale_inputs() (in module pymgipsim.inputgeneration.generate_multiscale_inputs)": [[34, "pymgipsim.InputGeneration.generate_multiscale_inputs.generate_multiscale_inputs"]], "pymgipsim.inputgeneration.generate_sglt2i_signal": [[35, "module-pymgipsim.InputGeneration.generate_sglt2i_signal"]], "generate_sglt2i_events() (in module pymgipsim.inputgeneration.generate_sglt2i_signal)": [[36, "pymgipsim.InputGeneration.generate_sglt2i_signal.generate_sglt2i_events"]], "pymgipsim.inputgeneration.heart_rate_settings": [[37, "module-pymgipsim.InputGeneration.heart_rate_settings"]], "generate_heart_rate() (in module pymgipsim.inputgeneration.heart_rate_settings)": [[38, "pymgipsim.InputGeneration.heart_rate_settings.generate_heart_rate"]], "pymgipsim.inputgeneration.insulin_settings": [[39, "module-pymgipsim.InputGeneration.insulin_settings"]], "generate_basal_insulin() (in module pymgipsim.inputgeneration.insulin_settings)": [[40, "pymgipsim.InputGeneration.insulin_settings.generate_basal_insulin"]], "generate_bolus_insulin() (in module pymgipsim.inputgeneration.insulin_settings)": [[41, "pymgipsim.InputGeneration.insulin_settings.generate_bolus_insulin"]], "calculate_daily_energy_intake() (in module pymgipsim.inputgeneration.meal_energy_content)": [[42, "pymgipsim.InputGeneration.meal_energy_content.calculate_daily_energy_intake"], [43, "pymgipsim.InputGeneration.meal_energy_content.calculate_daily_energy_intake"]], "estimate_energy_intake_from_g_cho() (in module pymgipsim.inputgeneration.meal_energy_content)": [[42, "pymgipsim.InputGeneration.meal_energy_content.estimate_energy_intake_from_g_cho"], [44, "pymgipsim.InputGeneration.meal_energy_content.estimate_energy_intake_from_g_cho"]], "estimate_g_cho_from_energy_intake() (in module pymgipsim.inputgeneration.meal_energy_content)": [[42, "pymgipsim.InputGeneration.meal_energy_content.estimate_g_cho_from_energy_intake"], [45, "pymgipsim.InputGeneration.meal_energy_content.estimate_g_cho_from_energy_intake"]], "pymgipsim.inputgeneration.meal_energy_content": [[42, "module-pymgipsim.InputGeneration.meal_energy_content"]], "pymgipsim.inputgeneration.sglt2i_settings": [[46, "module-pymgipsim.InputGeneration.sglt2i_settings"]], "make_sglt2i_settings() (in module pymgipsim.inputgeneration.sglt2i_settings)": [[47, "pymgipsim.InputGeneration.sglt2i_settings.make_sglt2i_settings"]], "events (class in pymgipsim.inputgeneration.signal)": [[48, "pymgipsim.InputGeneration.signal.Events"], [49, "pymgipsim.InputGeneration.signal.Events"]], "signal (class in pymgipsim.inputgeneration.signal)": [[48, "pymgipsim.InputGeneration.signal.Signal"], [50, "pymgipsim.InputGeneration.signal.Signal"]], "as_dict() (events method)": [[48, "pymgipsim.InputGeneration.signal.Events.as_dict"], [49, "pymgipsim.InputGeneration.signal.Events.as_dict"]], "as_dict() (signal method)": [[48, "pymgipsim.InputGeneration.signal.Signal.as_dict"], [50, "pymgipsim.InputGeneration.signal.Signal.as_dict"]], "duration (events attribute)": [[48, "pymgipsim.InputGeneration.signal.Events.duration"], [49, "pymgipsim.InputGeneration.signal.Events.duration"]], "magnitude (events attribute)": [[48, "pymgipsim.InputGeneration.signal.Events.magnitude"], [49, "pymgipsim.InputGeneration.signal.Events.magnitude"]], "pymgipsim.inputgeneration.signal": [[48, "module-pymgipsim.InputGeneration.signal"]], "sampled_signal (signal attribute)": [[48, "pymgipsim.InputGeneration.signal.Signal.sampled_signal"], [50, "pymgipsim.InputGeneration.signal.Signal.sampled_signal"]], "start_time (events attribute)": [[48, "pymgipsim.InputGeneration.signal.Events.start_time"], [49, "pymgipsim.InputGeneration.signal.Events.start_time"]], "__create_signal() (signal method)": [[50, "pymgipsim.InputGeneration.signal.Signal.__create_signal"]], "create_square_wave() (in module pymgipsim.inputgeneration.waves)": [[51, "pymgipsim.InputGeneration.waves.create_square_wave"], [52, "pymgipsim.InputGeneration.waves.create_square_wave"]], "pymgipsim.inputgeneration.waves": [[51, "module-pymgipsim.InputGeneration.waves"]], "pymgipsim.interface": [[53, "module-pymgipsim.Interface"]], "pymgipsim.interface.gui": [[54, "module-pymgipsim.Interface.GUI"]], "pymgipsim.interface.gui.activities": [[55, "module-pymgipsim.Interface.GUI.activities"]], "activities() (in module pymgipsim.interface.gui.activities)": [[56, "pymgipsim.Interface.GUI.activities.activities"]], "pymgipsim.interface.gui.cohort": [[57, "module-pymgipsim.Interface.GUI.cohort"]], "cohort() (in module pymgipsim.interface.gui.cohort)": [[58, "pymgipsim.Interface.GUI.cohort.cohort"]], "pymgipsim.interface.gui.meals": [[59, "module-pymgipsim.Interface.GUI.meals"]], "meals() (in module pymgipsim.interface.gui.meals)": [[60, "pymgipsim.Interface.GUI.meals.meals"]], "pymgipsim.interface.gui.plots": [[61, "module-pymgipsim.Interface.GUI.plots"]], "plot_hovorka() (in module pymgipsim.interface.gui.plots)": [[62, "pymgipsim.Interface.GUI.plots.plot_hovorka"]], "plot_multiscale() (in module pymgipsim.interface.gui.plots)": [[63, "pymgipsim.Interface.GUI.plots.plot_multiscale"]], "pymgipsim.interface.gui.therapies": [[64, "module-pymgipsim.Interface.GUI.therapies"]], "therapies() (in module pymgipsim.interface.gui.therapies)": [[65, "pymgipsim.Interface.GUI.therapies.therapies"]], "pymgipsim.modelsolver": [[66, "module-pymgipsim.ModelSolver"]], "basesolver (class in pymgipsim.modelsolver.basesolvers)": [[67, "pymgipsim.ModelSolver.BaseSolvers.BaseSolver"], [68, "pymgipsim.ModelSolver.BaseSolvers.BaseSolver"]], "pymgipsim.modelsolver.basesolvers": [[67, "module-pymgipsim.ModelSolver.BaseSolvers"]], "multiscalesolver (class in pymgipsim.modelsolver.multiscale)": [[69, "pymgipsim.ModelSolver.multiscale.MultiScaleSolver"], [70, "pymgipsim.ModelSolver.multiscale.MultiScaleSolver"]], "multiscalesolverbase (class in pymgipsim.modelsolver.multiscale)": [[69, "pymgipsim.ModelSolver.multiscale.MultiscaleSolverBase"], [71, "pymgipsim.ModelSolver.multiscale.MultiscaleSolverBase"]], "do_simulation() (multiscalesolver method)": [[69, "pymgipsim.ModelSolver.multiscale.MultiScaleSolver.do_simulation"], [70, "pymgipsim.ModelSolver.multiscale.MultiScaleSolver.do_simulation"]], "pymgipsim.modelsolver.multiscale": [[69, "module-pymgipsim.ModelSolver.multiscale"]], "singlescalesolver (class in pymgipsim.modelsolver.singlescale)": [[72, "pymgipsim.ModelSolver.singlescale.SingleScaleSolver"], [73, "pymgipsim.ModelSolver.singlescale.SingleScaleSolver"]], "solverbase (class in pymgipsim.modelsolver.singlescale)": [[72, "pymgipsim.ModelSolver.singlescale.SolverBase"], [74, "pymgipsim.ModelSolver.singlescale.SolverBase"]], "do_simulation() (singlescalesolver method)": [[72, "pymgipsim.ModelSolver.singlescale.SingleScaleSolver.do_simulation"], [73, "pymgipsim.ModelSolver.singlescale.SingleScaleSolver.do_simulation"]], "pymgipsim.modelsolver.singlescale": [[72, "module-pymgipsim.ModelSolver.singlescale"]], "pymgipsim.odesolvers": [[75, "module-pymgipsim.ODESolvers"]], "euler_single_step() (in module pymgipsim.odesolvers.ode_solvers)": [[76, "pymgipsim.ODESolvers.ode_solvers.euler_single_step"], [77, "pymgipsim.ODESolvers.ode_solvers.euler_single_step"]], "pymgipsim.odesolvers.ode_solvers": [[76, "module-pymgipsim.ODESolvers.ode_solvers"]], "rk4_single_step() (in module pymgipsim.odesolvers.ode_solvers)": [[76, "pymgipsim.ODESolvers.ode_solvers.rk4_single_step"], [78, "pymgipsim.ODESolvers.ode_solvers.rk4_single_step"]], "pymgipsim.plotting": [[79, "module-pymgipsim.Plotting"]], "pymgipsim.plotting.parser": [[80, "module-pymgipsim.Plotting.parser"]], "generate_plot_parser() (in module pymgipsim.plotting.parser)": [[81, "pymgipsim.Plotting.parser.generate_plot_parser"]], "generate_plot_parser_multiscale() (in module pymgipsim.plotting.parser)": [[82, "pymgipsim.Plotting.parser.generate_plot_parser_multiscale"]], "plot_all_states() (in module pymgipsim.plotting.plotting)": [[83, "pymgipsim.Plotting.plotting.plot_all_states"], [84, "pymgipsim.Plotting.plotting.plot_all_states"]], "plot_bgc() (in module pymgipsim.plotting.plotting)": [[83, "pymgipsim.Plotting.plotting.plot_bgc"], [85, "pymgipsim.Plotting.plotting.plot_bgc"]], "pymgipsim.plotting.plotting": [[83, "module-pymgipsim.Plotting.plotting"]], "plot_bw() (in module pymgipsim.plotting.plotting)": [[86, "pymgipsim.Plotting.plotting.plot_bw"]], "plot_input_signals() (in module pymgipsim.plotting.plotting)": [[87, "pymgipsim.Plotting.plotting.plot_input_signals"]], "plot_subject_response() (in module pymgipsim.plotting.plotting)": [[88, "pymgipsim.Plotting.plotting.plot_subject_response"]], "pymgipsim.probability": [[89, "module-pymgipsim.Probability"]], "normal_pdf() (in module pymgipsim.probability.distributions)": [[90, "pymgipsim.Probability.distributions.normal_pdf"], [91, "pymgipsim.Probability.distributions.normal_pdf"]], "pymgipsim.probability.distributions": [[90, "module-pymgipsim.Probability.distributions"]], "truncated_normal_pdf() (in module pymgipsim.probability.distributions)": [[90, "pymgipsim.Probability.distributions.truncated_normal_pdf"], [92, "pymgipsim.Probability.distributions.truncated_normal_pdf"]], "uniform_pdf() (in module pymgipsim.probability.distributions)": [[90, "pymgipsim.Probability.distributions.uniform_pdf"], [93, "pymgipsim.Probability.distributions.uniform_pdf"]], "generate_normalized_pdfs() (in module pymgipsim.probability.pdfs_samplers)": [[94, "pymgipsim.Probability.pdfs_samplers.generate_normalized_pdfs"], [95, "pymgipsim.Probability.pdfs_samplers.generate_normalized_pdfs"]], "generate_random_percentages() (in module pymgipsim.probability.pdfs_samplers)": [[94, "pymgipsim.Probability.pdfs_samplers.generate_random_percentages"], [96, "pymgipsim.Probability.pdfs_samplers.generate_random_percentages"]], "pymgipsim.probability.pdfs_samplers": [[94, "module-pymgipsim.Probability.pdfs_samplers"]], "sample_pdfs() (in module pymgipsim.probability.pdfs_samplers)": [[94, "pymgipsim.Probability.pdfs_samplers.sample_pdfs"], [98, "pymgipsim.Probability.pdfs_samplers.sample_pdfs"]], "sample_generator() (in module pymgipsim.probability.pdfs_samplers)": [[97, "pymgipsim.Probability.pdfs_samplers.sample_generator"]], "pymgipsim.settings": [[99, "module-pymgipsim.Settings"]], "pymgipsim.settings.defaultsettings": [[100, "module-pymgipsim.Settings.DefaultSettings"]], "pymgipsim.settings.settings_args_to_scenario": [[101, "module-pymgipsim.Settings.settings_args_to_scenario"]], "settings_args_to_scenario() (in module pymgipsim.settings.settings_args_to_scenario)": [[102, "pymgipsim.Settings.settings_args_to_scenario.settings_args_to_scenario"]], "pymgipsim.utilities": [[103, "module-pymgipsim.Utilities"]], "controller (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.controller"], [105, "pymgipsim.Utilities.Scenario.controller"]], "demographic_info (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.demographic_info"], [106, "pymgipsim.Utilities.Scenario.demographic_info"]], "input_generation (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.input_generation"], [107, "pymgipsim.Utilities.Scenario.input_generation"]], "inputs (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.inputs"], [108, "pymgipsim.Utilities.Scenario.inputs"]], "model (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.model"], [110, "pymgipsim.Utilities.Scenario.model"]], "mscale (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.mscale"], [111, "pymgipsim.Utilities.Scenario.mscale"]], "patient (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.patient"], [112, "pymgipsim.Utilities.Scenario.patient"]], "pymgipsim.utilities.scenario": [[104, "module-pymgipsim.Utilities.Scenario"]], "scenario (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.scenario"], [114, "pymgipsim.Utilities.Scenario.scenario"]], "settings (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.settings"], [115, "pymgipsim.Utilities.Scenario.settings"]], "load_scenario() (in module pymgipsim.utilities.scenario)": [[109, "pymgipsim.Utilities.Scenario.load_scenario"]], "save_scenario() (in module pymgipsim.utilities.scenario)": [[113, "pymgipsim.Utilities.Scenario.save_scenario"]], "pymgipsim.utilities.timestamp": [[116, "module-pymgipsim.Utilities.Timestamp"]], "timestamp (class in pymgipsim.utilities.timestamp)": [[117, "pymgipsim.Utilities.Timestamp.Timestamp"]], "pymgipsim.utilities.dimensions": [[118, "module-pymgipsim.Utilities.dimensions"]], "make_list_size_consistent() (in module pymgipsim.utilities.dimensions)": [[119, "pymgipsim.Utilities.dimensions.make_list_size_consistent"]], "pymgipsim.utilities.metadata": [[120, "module-pymgipsim.Utilities.metadata"]], "simulationmetadata (class in pymgipsim.utilities.metadata)": [[121, "pymgipsim.Utilities.metadata.SimulationMetaData"]], "generate_system_information() (simulationmetadata static method)": [[121, "pymgipsim.Utilities.metadata.SimulationMetaData.generate_system_information"]], "generate_timestamp() (simulationmetadata static method)": [[121, "pymgipsim.Utilities.metadata.SimulationMetaData.generate_timestamp"]], "pymgipsim.utilities.paths": [[122, "module-pymgipsim.Utilities.paths"]], "create_simulation_folder() (in module pymgipsim.utilities.simulation_folder)": [[123, "pymgipsim.Utilities.simulation_folder.create_simulation_folder"], [124, "pymgipsim.Utilities.simulation_folder.create_simulation_folder"]], "create_simulation_name() (in module pymgipsim.utilities.simulation_folder)": [[123, "pymgipsim.Utilities.simulation_folder.create_simulation_name"], [125, "pymgipsim.Utilities.simulation_folder.create_simulation_name"]], "create_simulation_results_folder() (in module pymgipsim.utilities.simulation_folder)": [[123, "pymgipsim.Utilities.simulation_folder.create_simulation_results_folder"], [126, "pymgipsim.Utilities.simulation_folder.create_simulation_results_folder"]], "get_most_recent_folder_in_directory() (in module pymgipsim.utilities.simulation_folder)": [[123, "pymgipsim.Utilities.simulation_folder.get_most_recent_folder_in_directory"], [127, "pymgipsim.Utilities.simulation_folder.get_most_recent_folder_in_directory"]], "pymgipsim.utilities.simulation_folder": [[123, "module-pymgipsim.Utilities.simulation_folder"]], "load_settings_file() (in module pymgipsim.utilities.simulation_folder)": [[128, "pymgipsim.Utilities.simulation_folder.load_settings_file"]], "save_to_xls() (in module pymgipsim.utilities.simulation_folder)": [[129, "pymgipsim.Utilities.simulation_folder.save_to_xls"]], "glucose_kcal_per_gram (in module pymgipsim.utilities.units_conversions_constants)": [[130, "pymgipsim.Utilities.units_conversions_constants.GLUCOSE_KCAL_PER_GRAM"], [131, "pymgipsim.Utilities.units_conversions_constants.GLUCOSE_KCAL_PER_GRAM"]], "pymgipsim.utilities.units_conversions_constants": [[130, "module-pymgipsim.Utilities.units_conversions_constants"]], "glucoseunits (class in pymgipsim.utilities.units_conversions_constants)": [[132, "pymgipsim.Utilities.units_conversions_constants.GlucoseUnits"]], "insulinunits (class in pymgipsim.utilities.units_conversions_constants)": [[133, "pymgipsim.Utilities.units_conversions_constants.InsulinUnits"]], "metricunits (class in pymgipsim.utilities.units_conversions_constants)": [[134, "pymgipsim.Utilities.units_conversions_constants.MetricUnits"]], "timeunits (class in pymgipsim.utilities.units_conversions_constants)": [[135, "pymgipsim.Utilities.units_conversions_constants.TimeUnits"]], "convert_inverse_hour_inverse_minute() (timeunits static method)": [[135, "pymgipsim.Utilities.units_conversions_constants.TimeUnits.convert_inverse_hour_inverse_minute"]], "unitconversion (class in pymgipsim.utilities.units_conversions_constants)": [[136, "pymgipsim.Utilities.units_conversions_constants.UnitConversion"]], "pymgipsim.virtualpatient": [[137, "module-pymgipsim.VirtualPatient"]], "pymgipsim.virtualpatient.models": [[138, "module-pymgipsim.VirtualPatient.Models"]], "pymgipsim.virtualpatient.models.multiscale": [[139, "module-pymgipsim.VirtualPatient.Models.Multiscale"]], "pymgipsim.virtualpatient.models.multiscale.bodyweight": [[140, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight"]], "pymgipsim.virtualpatient.models.multiscale.bodyweight.constants": [[141, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.CONSTANTS"]], "inputs (class in pymgipsim.virtualpatient.models.multiscale.bodyweight.inputs)": [[142, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Inputs.Inputs"]], "pymgipsim.virtualpatient.models.multiscale.bodyweight.inputs": [[142, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Inputs"]], "tojson() (inputs method)": [[142, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Inputs.Inputs.toJSON"], [154, "pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Inputs.Inputs.toJSON"], [155, "pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Inputs.Inputs.toJSON"], [164, "pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Inputs.Inputs.toJSON"], [165, "pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Inputs.Inputs.toJSON"], [181, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.Inputs.toJSON"], [224, "pymgipsim.VirtualPatient.Models.T1DM.IVP.Inputs.Inputs.toJSON"]], "energy_expenditure (inputs attribute)": [[143, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Inputs.energy_expenditure"], [182, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.energy_expenditure"]], "energy_intake (inputs attribute)": [[144, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Inputs.energy_intake"]], "urinary_glucose_excretion (inputs attribute)": [[145, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Inputs.urinary_glucose_excretion"]], "model (class in pymgipsim.virtualpatient.models.multiscale.bodyweight.model)": [[146, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Model.Model"]], "from_scenario_multiscale() (model static method)": [[146, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Model.Model.from_scenario_multiscale"]], "output_equilibrium() (model static method)": [[146, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Model.Model.output_equilibrium"]], "preprocessing() (model method)": [[146, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Model.Model.preprocessing"]], "pymgipsim.virtualpatient.models.multiscale.bodyweight.model": [[146, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Model"]], "output_state (model attribute)": [[147, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Model.output_state"], [157, "pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Model.output_state"], [167, "pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Model.output_state"], [188, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.output_state"], [231, "pymgipsim.VirtualPatient.Models.T1DM.IVP.Model.output_state"]], "pymgipsim.virtualpatient.models.multiscale.bodyweight.parameters": [[148, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Parameters"]], "as_array (parameters attribute)": [[149, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Parameters.as_array"], [159, "pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Parameters.as_array"], [169, "pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Parameters.as_array"], [190, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Parameters.as_array"], [233, "pymgipsim.VirtualPatient.Models.T1DM.IVP.Parameters.as_array"]], "pymgipsim.virtualpatient.models.multiscale.bodyweight.states": [[150, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.States"]], "pymgipsim.virtualpatient.models.physact": [[151, "module-pymgipsim.VirtualPatient.Models.Physact"]], "pymgipsim.virtualpatient.models.physact.activity2heartrate": [[152, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate"]], "pymgipsim.virtualpatient.models.physact.activity2heartrate.constants": [[153, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.CONSTANTS"]], "inputs (class in pymgipsim.virtualpatient.models.physact.activity2heartrate.inputs)": [[154, "pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Inputs.Inputs"], [155, "pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Inputs.Inputs"]], "pymgipsim.virtualpatient.models.physact.activity2heartrate.inputs": [[154, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Inputs"]], "model (class in pymgipsim.virtualpatient.models.physact.activity2heartrate.model)": [[156, "pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Model.Model"]], "pymgipsim.virtualpatient.models.physact.activity2heartrate.model": [[156, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Model"]], "pymgipsim.virtualpatient.models.physact.activity2heartrate.parameters": [[158, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Parameters"]], "pymgipsim.virtualpatient.models.physact.activity2heartrate.states": [[160, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.States"]], "states (class in pymgipsim.virtualpatient.models.physact.activity2heartrate.states)": [[161, "pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.States.States"]], "pymgipsim.virtualpatient.models.physact.heartrate2energyexp": [[162, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp"]], "pymgipsim.virtualpatient.models.physact.heartrate2energyexp.constants": [[163, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.CONSTANTS"]], "inputs (class in pymgipsim.virtualpatient.models.physact.heartrate2energyexp.inputs)": [[164, "pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Inputs.Inputs"], [165, "pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Inputs.Inputs"]], "pymgipsim.virtualpatient.models.physact.heartrate2energyexp.inputs": [[164, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Inputs"]], "model (class in pymgipsim.virtualpatient.models.physact.heartrate2energyexp.model)": [[166, "pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Model.Model"]], "pymgipsim.virtualpatient.models.physact.heartrate2energyexp.model": [[166, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Model"]], "pymgipsim.virtualpatient.models.physact.heartrate2energyexp.parameters": [[168, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Parameters"]], "pymgipsim.virtualpatient.models.physact.heartrate2energyexp.states": [[170, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.States"]], "states (class in pymgipsim.virtualpatient.models.physact.heartrate2energyexp.states)": [[171, "pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.States.States"]], "pymgipsim.virtualpatient.models.t1dm": [[172, "module-pymgipsim.VirtualPatient.Models.T1DM"]], "pymgipsim.virtualpatient.models.t1dm.exthovorka": [[173, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka"]], "nominal_ag (in module pymgipsim.virtualpatient.models.t1dm.exthovorka.constants)": [[174, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_AG"], [175, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_AG"]], "nominal_bw (in module pymgipsim.virtualpatient.models.t1dm.exthovorka.constants)": [[174, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_BW"], [176, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_BW"]], "nominal_k12 (in module pymgipsim.virtualpatient.models.t1dm.exthovorka.constants)": [[174, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_k12"], [177, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_k12"]], "nominal_ka1 (in module pymgipsim.virtualpatient.models.t1dm.exthovorka.constants)": [[174, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_ka1"], [178, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_ka1"]], "nominal_ka2 (in module pymgipsim.virtualpatient.models.t1dm.exthovorka.constants)": [[174, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_ka2"], [179, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_ka2"]], "nominal_ka3 (in module pymgipsim.virtualpatient.models.t1dm.exthovorka.constants)": [[174, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_ka3"], [180, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_ka3"]], "pymgipsim.virtualpatient.models.t1dm.exthovorka.constants": [[174, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS"]], "inputs (class in pymgipsim.virtualpatient.models.t1dm.exthovorka.inputs)": [[181, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.Inputs"]], "pymgipsim.virtualpatient.models.t1dm.exthovorka.inputs": [[181, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs"]], "ufastcarbs (inputs attribute)": [[181, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.Inputs.uFastCarbs"], [183, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.uFastCarbs"]], "uhr (inputs attribute)": [[181, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.Inputs.uHR"], [184, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.uHR"]], "uinsulin (inputs attribute)": [[181, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.Inputs.uInsulin"], [185, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.uInsulin"]], "uslowcarbs (inputs attribute)": [[181, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.Inputs.uSlowCarbs"], [186, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.uSlowCarbs"]], "unknown (inputs attribute)": [[181, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.Inputs.unknown"]], "model (class in pymgipsim.virtualpatient.models.t1dm.exthovorka.model)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model"]], "get_basal_equilibrium() (model static method)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model.get_basal_equilibrium"], [230, "pymgipsim.VirtualPatient.Models.T1DM.IVP.Model.Model.get_basal_equilibrium"]], "initial_conditions (model attribute)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model.initial_conditions"]], "inputs (model attribute)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model.inputs"]], "model() (model static method)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model.model"]], "parameters (model attribute)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model.parameters"]], "pymgipsim.virtualpatient.models.t1dm.exthovorka.model": [[187, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model"]], "sampling_time (model attribute)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model.sampling_time"]], "states (model attribute)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model.states"]], "time (model attribute)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model.time"]], "parameters (class in pymgipsim.virtualpatient.models.t1dm.exthovorka.parameters)": [[189, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Parameters.Parameters"]], "fromjson() (parameters method)": [[189, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Parameters.Parameters.fromJSON"]], "pymgipsim.virtualpatient.models.t1dm.exthovorka.parameters": [[189, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Parameters"]], "pymgipsim.virtualpatient.models.t1dm.exthovorka.states": [[191, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.States"]], "pymgipsim.virtualpatient.models.t1dm.ivp": [[192, "module-pymgipsim.VirtualPatient.Models.T1DM.IVP"]], "max_bw (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_BW"], [194, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_BW"]], "max_ci (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_CI"], [195, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_CI"]], "max_egp (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_EGP"], [196, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_EGP"]], "max_gezi (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_GEZI"], [197, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_GEZI"]], "max_p2 (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_P2"], [198, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_P2"]], "max_si (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_SI"], [199, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_SI"]], "max_tau1 (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_TAU1"], [200, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_TAU1"]], "max_tau2 (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_TAU2"], [201, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_TAU2"]], "max_taud (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_TAUD"], [202, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_TAUD"]], "max_vg (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_VG"], [203, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_VG"]], "min_bw (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_BW"], [204, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_BW"]], "min_ci (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_CI"], [205, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_CI"]], "min_egp (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_EGP"], [206, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_EGP"]], "min_gezi (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_GEZI"], [207, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_GEZI"]], "min_p2 (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_P2"], [208, 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"pymgipsim.VirtualPatient.Models.T1DM.IVP.Parameters.as_array": [[233, "pymgipsim-virtualpatient-models-t1dm-ivp-parameters-as-array"]], "pymgipsim.VirtualPatient.Models.T1DM.IVP.States": [[234, "pymgipsim-virtualpatient-models-t1dm-ivp-states"]], "pymgipsim.VirtualPatient.VirtualPatient": [[235, "pymgipsim-virtualpatient-virtualpatient"], [236, "pymgipsim-virtualpatient-virtualpatient"]], "pymgipsim.generate_plots": [[237, "pymgipsim-generate-plots"]], "pymgipsim.generate_plots.generate_plots_main": [[238, "pymgipsim-generate-plots-generate-plots-main"]], "\ud83c\udf2c\ufe0f\ud83c\udf01 About us": [[239, "about-us"]], "For the curious ones": [[240, "for-the-curious-ones"]], "Simulation workflow": [[240, "simulation-workflow"]], "(T1DM, ) = **mGIPsim": [[241, "t1dm-mgipsim"]], "Inputs": [[242, "inputs"]], "Meal and snack": [[242, "meal-and-snack"]], "Insulin": [[242, "insulin"]], "SGL2i": [[242, "sgl2i"]], "Activity": [[242, "activity"]], "Models": [[243, "models"]], "T1DM Extended Hovorka": [[243, "t1dm-extended-hovorka"]], "T1DM IVP": [[243, "t1dm-ivp"]], "For developers": [[244, "for-developers"]], "Programatically run simulations": [[244, "programatically-run-simulations"]], "How to add a model?": [[244, "how-to-add-a-model"]], "How to add a controller?": [[244, "how-to-add-a-controller"]], "PYmGIPsim package": [[244, "pymgipsim-package"]], "Quickstart": [[245, "quickstart"]], "Requirements": [[245, "requirements"]], "Graphical User Interface": [[245, "graphical-user-interface"]], "Command Line - Interactive": [[245, "command-line-interactive"]], "Plot the results": [[245, "plot-the-results"]], "Command Line - single command": [[245, "command-line-single-command"]], "User interface": [[246, "user-interface"]], "Command-line interface": [[246, "command-line-interface"]], "List of available commands:": [[246, "id1"]], "Defining a scenario": [[246, "defining-a-scenario"]], "Playthrough example:": [[246, "id2"]], "Plots and exports": [[246, "plots-and-exports"]], "Example xls export": [[246, "id3"]]}, "indexentries": {"module": [[0, "module-pymgipsim"], [1, "module-pymgipsim.Controllers"], [2, "module-pymgipsim.Controllers.OpenLoop"], [3, "module-pymgipsim.Controllers.OpenLoop.controller"], [5, "module-pymgipsim.Controllers.SAPT"], [6, "module-pymgipsim.Controllers.SAPT.controller"], [8, "module-pymgipsim.Controllers.StochasticOpenLoop"], [9, "module-pymgipsim.Controllers.StochasticOpenLoop.controller"], [11, "module-pymgipsim.Controllers.parser"], [15, "module-pymgipsim.InputGeneration"], [16, "module-pymgipsim.InputGeneration.activity_settings"], [20, "module-pymgipsim.InputGeneration.carb_energy_settings"], [23, "module-pymgipsim.InputGeneration.energy_expenditure_settings"], [25, "module-pymgipsim.InputGeneration.generate_carb_signal"], [32, "module-pymgipsim.InputGeneration.generate_multiscale_inputs"], [35, "module-pymgipsim.InputGeneration.generate_sglt2i_signal"], [37, "module-pymgipsim.InputGeneration.heart_rate_settings"], [39, 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"module-pymgipsim.Controllers.SAPT.controller"]], "controller (class in pymgipsim.controllers.sapt.controller)": [[7, "pymgipsim.Controllers.SAPT.controller.Controller"]], "pymgipsim.controllers.stochasticopenloop": [[8, "module-pymgipsim.Controllers.StochasticOpenLoop"]], "pymgipsim.controllers.stochasticopenloop.controller": [[9, "module-pymgipsim.Controllers.StochasticOpenLoop.controller"]], "controller (class in pymgipsim.controllers.stochasticopenloop.controller)": [[10, "pymgipsim.Controllers.StochasticOpenLoop.controller.Controller"]], "pymgipsim.controllers.parser": [[11, "module-pymgipsim.Controllers.parser"]], "controller_args_to_scenario() (in module pymgipsim.controllers.parser)": [[12, "pymgipsim.Controllers.parser.controller_args_to_scenario"]], "generate_controller_settings_parser() (in module pymgipsim.controllers.parser)": [[13, "pymgipsim.Controllers.parser.generate_controller_settings_parser"]], "get_controller_names() (in module pymgipsim.controllers.parser)": [[14, "pymgipsim.Controllers.parser.get_controller_names"]], "pymgipsim.inputgeneration": [[15, "module-pymgipsim.InputGeneration"]], "pymgipsim.inputgeneration.activity_settings": [[16, "module-pymgipsim.InputGeneration.activity_settings"]], "activity_args_to_scenario() (in module pymgipsim.inputgeneration.activity_settings)": [[17, "pymgipsim.InputGeneration.activity_settings.activity_args_to_scenario"]], "generate_activities() (in module pymgipsim.inputgeneration.activity_settings)": [[18, "pymgipsim.InputGeneration.activity_settings.generate_activities"]], "time_str_to_float() (in module pymgipsim.inputgeneration.activity_settings)": [[19, "pymgipsim.InputGeneration.activity_settings.time_str_to_float"]], "pymgipsim.inputgeneration.carb_energy_settings": [[20, "module-pymgipsim.InputGeneration.carb_energy_settings"]], "generate_carb_absorption() (in module pymgipsim.inputgeneration.carb_energy_settings)": [[21, "pymgipsim.InputGeneration.carb_energy_settings.generate_carb_absorption"]], "make_carb_settings() (in module pymgipsim.inputgeneration.carb_energy_settings)": [[22, "pymgipsim.InputGeneration.carb_energy_settings.make_carb_settings"]], "pymgipsim.inputgeneration.energy_expenditure_settings": [[23, "module-pymgipsim.InputGeneration.energy_expenditure_settings"]], "generate_energy_expenditure() (in module pymgipsim.inputgeneration.energy_expenditure_settings)": [[24, "pymgipsim.InputGeneration.energy_expenditure_settings.generate_energy_expenditure"]], "generate_carb_magnitudes_singlescale() (in module pymgipsim.inputgeneration.generate_carb_signal)": [[25, "pymgipsim.InputGeneration.generate_carb_signal.generate_carb_magnitudes_singlescale"], [30, "pymgipsim.InputGeneration.generate_carb_signal.generate_carb_magnitudes_singlescale"]], "pymgipsim.inputgeneration.generate_carb_signal": [[25, "module-pymgipsim.InputGeneration.generate_carb_signal"]], "calculate_meal_time_samples() (in module pymgipsim.inputgeneration.generate_carb_signal)": [[26, "pymgipsim.InputGeneration.generate_carb_signal.calculate_meal_time_samples"]], "calculate_snack_time_samples() (in module pymgipsim.inputgeneration.generate_carb_signal)": [[27, "pymgipsim.InputGeneration.generate_carb_signal.calculate_snack_time_samples"]], "generate_carb_events() (in module pymgipsim.inputgeneration.generate_carb_signal)": [[28, "pymgipsim.InputGeneration.generate_carb_signal.generate_carb_events"]], "generate_carb_magnitudes_multiscale() (in module pymgipsim.inputgeneration.generate_carb_signal)": [[29, "pymgipsim.InputGeneration.generate_carb_signal.generate_carb_magnitudes_multiscale"]], "generate_carb_ranges_multiscale() (in module pymgipsim.inputgeneration.generate_carb_signal)": [[31, "pymgipsim.InputGeneration.generate_carb_signal.generate_carb_ranges_multiscale"]], "pymgipsim.inputgeneration.generate_multiscale_inputs": [[32, "module-pymgipsim.InputGeneration.generate_multiscale_inputs"]], "generate_bodyweight_events() (in module pymgipsim.inputgeneration.generate_multiscale_inputs)": [[33, "pymgipsim.InputGeneration.generate_multiscale_inputs.generate_bodyweight_events"]], "generate_multiscale_inputs() (in module pymgipsim.inputgeneration.generate_multiscale_inputs)": [[34, "pymgipsim.InputGeneration.generate_multiscale_inputs.generate_multiscale_inputs"]], "pymgipsim.inputgeneration.generate_sglt2i_signal": [[35, "module-pymgipsim.InputGeneration.generate_sglt2i_signal"]], "generate_sglt2i_events() (in module pymgipsim.inputgeneration.generate_sglt2i_signal)": [[36, "pymgipsim.InputGeneration.generate_sglt2i_signal.generate_sglt2i_events"]], "pymgipsim.inputgeneration.heart_rate_settings": [[37, "module-pymgipsim.InputGeneration.heart_rate_settings"]], "generate_heart_rate() (in module pymgipsim.inputgeneration.heart_rate_settings)": [[38, "pymgipsim.InputGeneration.heart_rate_settings.generate_heart_rate"]], "pymgipsim.inputgeneration.insulin_settings": [[39, "module-pymgipsim.InputGeneration.insulin_settings"]], "generate_basal_insulin() (in module pymgipsim.inputgeneration.insulin_settings)": [[40, "pymgipsim.InputGeneration.insulin_settings.generate_basal_insulin"]], "generate_bolus_insulin() (in module pymgipsim.inputgeneration.insulin_settings)": [[41, "pymgipsim.InputGeneration.insulin_settings.generate_bolus_insulin"]], "calculate_daily_energy_intake() (in module pymgipsim.inputgeneration.meal_energy_content)": [[42, "pymgipsim.InputGeneration.meal_energy_content.calculate_daily_energy_intake"], [43, "pymgipsim.InputGeneration.meal_energy_content.calculate_daily_energy_intake"]], "estimate_energy_intake_from_g_cho() (in module pymgipsim.inputgeneration.meal_energy_content)": [[42, "pymgipsim.InputGeneration.meal_energy_content.estimate_energy_intake_from_g_cho"], [44, "pymgipsim.InputGeneration.meal_energy_content.estimate_energy_intake_from_g_cho"]], "estimate_g_cho_from_energy_intake() (in module pymgipsim.inputgeneration.meal_energy_content)": [[42, "pymgipsim.InputGeneration.meal_energy_content.estimate_g_cho_from_energy_intake"], [45, "pymgipsim.InputGeneration.meal_energy_content.estimate_g_cho_from_energy_intake"]], "pymgipsim.inputgeneration.meal_energy_content": [[42, "module-pymgipsim.InputGeneration.meal_energy_content"]], "pymgipsim.inputgeneration.sglt2i_settings": [[46, "module-pymgipsim.InputGeneration.sglt2i_settings"]], "make_sglt2i_settings() (in module pymgipsim.inputgeneration.sglt2i_settings)": [[47, "pymgipsim.InputGeneration.sglt2i_settings.make_sglt2i_settings"]], "events (class in pymgipsim.inputgeneration.signal)": [[48, "pymgipsim.InputGeneration.signal.Events"], [49, "pymgipsim.InputGeneration.signal.Events"]], "signal (class in pymgipsim.inputgeneration.signal)": [[48, "pymgipsim.InputGeneration.signal.Signal"], [50, "pymgipsim.InputGeneration.signal.Signal"]], "as_dict() (events method)": [[48, "pymgipsim.InputGeneration.signal.Events.as_dict"], [49, "pymgipsim.InputGeneration.signal.Events.as_dict"]], "as_dict() (signal method)": [[48, "pymgipsim.InputGeneration.signal.Signal.as_dict"], [50, "pymgipsim.InputGeneration.signal.Signal.as_dict"]], "duration (events attribute)": [[48, "pymgipsim.InputGeneration.signal.Events.duration"], [49, "pymgipsim.InputGeneration.signal.Events.duration"]], "magnitude (events attribute)": [[48, "pymgipsim.InputGeneration.signal.Events.magnitude"], [49, "pymgipsim.InputGeneration.signal.Events.magnitude"]], "pymgipsim.inputgeneration.signal": [[48, "module-pymgipsim.InputGeneration.signal"]], "sampled_signal (signal attribute)": [[48, "pymgipsim.InputGeneration.signal.Signal.sampled_signal"], [50, "pymgipsim.InputGeneration.signal.Signal.sampled_signal"]], "start_time (events attribute)": [[48, "pymgipsim.InputGeneration.signal.Events.start_time"], [49, "pymgipsim.InputGeneration.signal.Events.start_time"]], "__create_signal() (signal method)": [[50, "pymgipsim.InputGeneration.signal.Signal.__create_signal"]], "create_square_wave() (in module pymgipsim.inputgeneration.waves)": [[51, "pymgipsim.InputGeneration.waves.create_square_wave"], [52, "pymgipsim.InputGeneration.waves.create_square_wave"]], "pymgipsim.inputgeneration.waves": [[51, "module-pymgipsim.InputGeneration.waves"]], "pymgipsim.interface": [[53, "module-pymgipsim.Interface"]], "pymgipsim.interface.gui": [[54, "module-pymgipsim.Interface.GUI"]], "pymgipsim.interface.gui.activities": [[55, "module-pymgipsim.Interface.GUI.activities"]], "activities() (in module pymgipsim.interface.gui.activities)": [[56, "pymgipsim.Interface.GUI.activities.activities"]], "pymgipsim.interface.gui.cohort": [[57, "module-pymgipsim.Interface.GUI.cohort"]], "cohort() (in module pymgipsim.interface.gui.cohort)": [[58, "pymgipsim.Interface.GUI.cohort.cohort"]], "pymgipsim.interface.gui.meals": [[59, "module-pymgipsim.Interface.GUI.meals"]], "meals() (in module pymgipsim.interface.gui.meals)": [[60, "pymgipsim.Interface.GUI.meals.meals"]], "pymgipsim.interface.gui.plots": [[61, "module-pymgipsim.Interface.GUI.plots"]], "plot_hovorka() (in module pymgipsim.interface.gui.plots)": [[62, "pymgipsim.Interface.GUI.plots.plot_hovorka"]], "plot_multiscale() (in module pymgipsim.interface.gui.plots)": [[63, "pymgipsim.Interface.GUI.plots.plot_multiscale"]], "pymgipsim.interface.gui.therapies": [[64, "module-pymgipsim.Interface.GUI.therapies"]], "therapies() (in module pymgipsim.interface.gui.therapies)": [[65, "pymgipsim.Interface.GUI.therapies.therapies"]], "pymgipsim.modelsolver": [[66, "module-pymgipsim.ModelSolver"]], "basesolver (class in pymgipsim.modelsolver.basesolvers)": [[67, "pymgipsim.ModelSolver.BaseSolvers.BaseSolver"], [68, "pymgipsim.ModelSolver.BaseSolvers.BaseSolver"]], "pymgipsim.modelsolver.basesolvers": [[67, "module-pymgipsim.ModelSolver.BaseSolvers"]], "multiscalesolver (class in pymgipsim.modelsolver.multiscale)": [[69, "pymgipsim.ModelSolver.multiscale.MultiScaleSolver"], [70, "pymgipsim.ModelSolver.multiscale.MultiScaleSolver"]], "multiscalesolverbase (class in pymgipsim.modelsolver.multiscale)": [[69, "pymgipsim.ModelSolver.multiscale.MultiscaleSolverBase"], [71, "pymgipsim.ModelSolver.multiscale.MultiscaleSolverBase"]], "do_simulation() (multiscalesolver method)": [[69, "pymgipsim.ModelSolver.multiscale.MultiScaleSolver.do_simulation"], [70, "pymgipsim.ModelSolver.multiscale.MultiScaleSolver.do_simulation"]], "pymgipsim.modelsolver.multiscale": [[69, "module-pymgipsim.ModelSolver.multiscale"]], "singlescalesolver (class in pymgipsim.modelsolver.singlescale)": [[72, "pymgipsim.ModelSolver.singlescale.SingleScaleSolver"], [73, "pymgipsim.ModelSolver.singlescale.SingleScaleSolver"]], "solverbase (class in pymgipsim.modelsolver.singlescale)": [[72, "pymgipsim.ModelSolver.singlescale.SolverBase"], [74, "pymgipsim.ModelSolver.singlescale.SolverBase"]], "do_simulation() (singlescalesolver method)": [[72, "pymgipsim.ModelSolver.singlescale.SingleScaleSolver.do_simulation"], [73, "pymgipsim.ModelSolver.singlescale.SingleScaleSolver.do_simulation"]], "pymgipsim.modelsolver.singlescale": [[72, "module-pymgipsim.ModelSolver.singlescale"]], "pymgipsim.odesolvers": [[75, "module-pymgipsim.ODESolvers"]], "euler_single_step() (in module pymgipsim.odesolvers.ode_solvers)": [[76, "pymgipsim.ODESolvers.ode_solvers.euler_single_step"], [77, "pymgipsim.ODESolvers.ode_solvers.euler_single_step"]], "pymgipsim.odesolvers.ode_solvers": [[76, "module-pymgipsim.ODESolvers.ode_solvers"]], "rk4_single_step() (in module pymgipsim.odesolvers.ode_solvers)": [[76, "pymgipsim.ODESolvers.ode_solvers.rk4_single_step"], [78, "pymgipsim.ODESolvers.ode_solvers.rk4_single_step"]], "pymgipsim.plotting": [[79, "module-pymgipsim.Plotting"]], "pymgipsim.plotting.parser": [[80, "module-pymgipsim.Plotting.parser"]], "generate_plot_parser() (in module pymgipsim.plotting.parser)": [[81, "pymgipsim.Plotting.parser.generate_plot_parser"]], "generate_plot_parser_multiscale() (in module pymgipsim.plotting.parser)": [[82, "pymgipsim.Plotting.parser.generate_plot_parser_multiscale"]], "plot_all_states() (in module pymgipsim.plotting.plotting)": [[83, "pymgipsim.Plotting.plotting.plot_all_states"], [84, "pymgipsim.Plotting.plotting.plot_all_states"]], "plot_bgc() (in module pymgipsim.plotting.plotting)": [[83, "pymgipsim.Plotting.plotting.plot_bgc"], [85, "pymgipsim.Plotting.plotting.plot_bgc"]], "pymgipsim.plotting.plotting": [[83, "module-pymgipsim.Plotting.plotting"]], "plot_bw() (in module pymgipsim.plotting.plotting)": [[86, "pymgipsim.Plotting.plotting.plot_bw"]], "plot_input_signals() (in module pymgipsim.plotting.plotting)": [[87, "pymgipsim.Plotting.plotting.plot_input_signals"]], "plot_subject_response() (in module pymgipsim.plotting.plotting)": [[88, "pymgipsim.Plotting.plotting.plot_subject_response"]], "pymgipsim.probability": [[89, "module-pymgipsim.Probability"]], "normal_pdf() (in module pymgipsim.probability.distributions)": [[90, "pymgipsim.Probability.distributions.normal_pdf"], [91, "pymgipsim.Probability.distributions.normal_pdf"]], "pymgipsim.probability.distributions": [[90, "module-pymgipsim.Probability.distributions"]], "truncated_normal_pdf() (in module pymgipsim.probability.distributions)": [[90, "pymgipsim.Probability.distributions.truncated_normal_pdf"], [92, "pymgipsim.Probability.distributions.truncated_normal_pdf"]], "uniform_pdf() (in module pymgipsim.probability.distributions)": [[90, "pymgipsim.Probability.distributions.uniform_pdf"], [93, "pymgipsim.Probability.distributions.uniform_pdf"]], "generate_normalized_pdfs() (in module pymgipsim.probability.pdfs_samplers)": [[94, "pymgipsim.Probability.pdfs_samplers.generate_normalized_pdfs"], [95, "pymgipsim.Probability.pdfs_samplers.generate_normalized_pdfs"]], "generate_random_percentages() (in module pymgipsim.probability.pdfs_samplers)": [[94, "pymgipsim.Probability.pdfs_samplers.generate_random_percentages"], [96, "pymgipsim.Probability.pdfs_samplers.generate_random_percentages"]], "pymgipsim.probability.pdfs_samplers": [[94, "module-pymgipsim.Probability.pdfs_samplers"]], "sample_pdfs() (in module pymgipsim.probability.pdfs_samplers)": [[94, "pymgipsim.Probability.pdfs_samplers.sample_pdfs"], [98, "pymgipsim.Probability.pdfs_samplers.sample_pdfs"]], "sample_generator() (in module pymgipsim.probability.pdfs_samplers)": [[97, "pymgipsim.Probability.pdfs_samplers.sample_generator"]], "pymgipsim.settings": [[99, "module-pymgipsim.Settings"]], "pymgipsim.settings.defaultsettings": [[100, "module-pymgipsim.Settings.DefaultSettings"]], "pymgipsim.settings.settings_args_to_scenario": [[101, "module-pymgipsim.Settings.settings_args_to_scenario"]], "settings_args_to_scenario() (in module pymgipsim.settings.settings_args_to_scenario)": [[102, "pymgipsim.Settings.settings_args_to_scenario.settings_args_to_scenario"]], "pymgipsim.utilities": [[103, "module-pymgipsim.Utilities"]], "controller (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.controller"], [105, "pymgipsim.Utilities.Scenario.controller"]], "demographic_info (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.demographic_info"], [106, "pymgipsim.Utilities.Scenario.demographic_info"]], "input_generation (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.input_generation"], [107, "pymgipsim.Utilities.Scenario.input_generation"]], "inputs (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.inputs"], [108, "pymgipsim.Utilities.Scenario.inputs"]], "model (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.model"], [110, "pymgipsim.Utilities.Scenario.model"]], "mscale (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.mscale"], [111, "pymgipsim.Utilities.Scenario.mscale"]], "patient (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.patient"], [112, "pymgipsim.Utilities.Scenario.patient"]], "pymgipsim.utilities.scenario": [[104, "module-pymgipsim.Utilities.Scenario"]], "scenario (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.scenario"], [114, "pymgipsim.Utilities.Scenario.scenario"]], "settings (class in pymgipsim.utilities.scenario)": [[104, "pymgipsim.Utilities.Scenario.settings"], [115, "pymgipsim.Utilities.Scenario.settings"]], "load_scenario() (in module pymgipsim.utilities.scenario)": [[109, "pymgipsim.Utilities.Scenario.load_scenario"]], "save_scenario() (in module pymgipsim.utilities.scenario)": [[113, "pymgipsim.Utilities.Scenario.save_scenario"]], "pymgipsim.utilities.timestamp": [[116, "module-pymgipsim.Utilities.Timestamp"]], "timestamp (class in pymgipsim.utilities.timestamp)": [[117, "pymgipsim.Utilities.Timestamp.Timestamp"]], "pymgipsim.utilities.dimensions": [[118, "module-pymgipsim.Utilities.dimensions"]], "make_list_size_consistent() (in module pymgipsim.utilities.dimensions)": [[119, "pymgipsim.Utilities.dimensions.make_list_size_consistent"]], "pymgipsim.utilities.metadata": [[120, "module-pymgipsim.Utilities.metadata"]], "simulationmetadata (class in pymgipsim.utilities.metadata)": [[121, "pymgipsim.Utilities.metadata.SimulationMetaData"]], "generate_system_information() (simulationmetadata static method)": [[121, "pymgipsim.Utilities.metadata.SimulationMetaData.generate_system_information"]], "generate_timestamp() (simulationmetadata static method)": [[121, "pymgipsim.Utilities.metadata.SimulationMetaData.generate_timestamp"]], "pymgipsim.utilities.paths": [[122, "module-pymgipsim.Utilities.paths"]], "create_simulation_folder() (in module pymgipsim.utilities.simulation_folder)": [[123, "pymgipsim.Utilities.simulation_folder.create_simulation_folder"], [124, "pymgipsim.Utilities.simulation_folder.create_simulation_folder"]], "create_simulation_name() (in module pymgipsim.utilities.simulation_folder)": [[123, "pymgipsim.Utilities.simulation_folder.create_simulation_name"], [125, "pymgipsim.Utilities.simulation_folder.create_simulation_name"]], "create_simulation_results_folder() (in module pymgipsim.utilities.simulation_folder)": [[123, "pymgipsim.Utilities.simulation_folder.create_simulation_results_folder"], [126, "pymgipsim.Utilities.simulation_folder.create_simulation_results_folder"]], "get_most_recent_folder_in_directory() (in module pymgipsim.utilities.simulation_folder)": [[123, "pymgipsim.Utilities.simulation_folder.get_most_recent_folder_in_directory"], [127, "pymgipsim.Utilities.simulation_folder.get_most_recent_folder_in_directory"]], "pymgipsim.utilities.simulation_folder": [[123, "module-pymgipsim.Utilities.simulation_folder"]], "load_settings_file() (in module pymgipsim.utilities.simulation_folder)": [[128, "pymgipsim.Utilities.simulation_folder.load_settings_file"]], "save_to_xls() (in module pymgipsim.utilities.simulation_folder)": [[129, "pymgipsim.Utilities.simulation_folder.save_to_xls"]], "glucose_kcal_per_gram (in module pymgipsim.utilities.units_conversions_constants)": [[130, "pymgipsim.Utilities.units_conversions_constants.GLUCOSE_KCAL_PER_GRAM"], [131, "pymgipsim.Utilities.units_conversions_constants.GLUCOSE_KCAL_PER_GRAM"]], "pymgipsim.utilities.units_conversions_constants": [[130, "module-pymgipsim.Utilities.units_conversions_constants"]], "glucoseunits (class in pymgipsim.utilities.units_conversions_constants)": [[132, "pymgipsim.Utilities.units_conversions_constants.GlucoseUnits"]], "insulinunits (class in pymgipsim.utilities.units_conversions_constants)": [[133, "pymgipsim.Utilities.units_conversions_constants.InsulinUnits"]], "metricunits (class in pymgipsim.utilities.units_conversions_constants)": [[134, "pymgipsim.Utilities.units_conversions_constants.MetricUnits"]], "timeunits (class in pymgipsim.utilities.units_conversions_constants)": [[135, "pymgipsim.Utilities.units_conversions_constants.TimeUnits"]], "convert_inverse_hour_inverse_minute() (timeunits static method)": [[135, "pymgipsim.Utilities.units_conversions_constants.TimeUnits.convert_inverse_hour_inverse_minute"]], "unitconversion (class in pymgipsim.utilities.units_conversions_constants)": [[136, "pymgipsim.Utilities.units_conversions_constants.UnitConversion"]], "pymgipsim.virtualpatient": [[137, "module-pymgipsim.VirtualPatient"]], "pymgipsim.virtualpatient.models": [[138, "module-pymgipsim.VirtualPatient.Models"]], "pymgipsim.virtualpatient.models.multiscale": [[139, "module-pymgipsim.VirtualPatient.Models.Multiscale"]], "pymgipsim.virtualpatient.models.multiscale.bodyweight": [[140, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight"]], "pymgipsim.virtualpatient.models.multiscale.bodyweight.constants": [[141, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.CONSTANTS"]], "inputs (class in pymgipsim.virtualpatient.models.multiscale.bodyweight.inputs)": [[142, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Inputs.Inputs"]], "pymgipsim.virtualpatient.models.multiscale.bodyweight.inputs": [[142, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Inputs"]], "tojson() (inputs method)": [[142, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Inputs.Inputs.toJSON"], [154, "pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Inputs.Inputs.toJSON"], [155, "pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Inputs.Inputs.toJSON"], [164, "pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Inputs.Inputs.toJSON"], [165, "pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Inputs.Inputs.toJSON"], [181, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.Inputs.toJSON"], [224, "pymgipsim.VirtualPatient.Models.T1DM.IVP.Inputs.Inputs.toJSON"]], "energy_expenditure (inputs attribute)": [[143, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Inputs.energy_expenditure"], [182, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.energy_expenditure"]], "energy_intake (inputs attribute)": [[144, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Inputs.energy_intake"]], "urinary_glucose_excretion (inputs attribute)": [[145, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Inputs.urinary_glucose_excretion"]], "model (class in pymgipsim.virtualpatient.models.multiscale.bodyweight.model)": [[146, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Model.Model"]], "from_scenario_multiscale() (model static method)": [[146, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Model.Model.from_scenario_multiscale"]], "output_equilibrium() (model static method)": [[146, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Model.Model.output_equilibrium"]], "preprocessing() (model method)": [[146, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Model.Model.preprocessing"]], "pymgipsim.virtualpatient.models.multiscale.bodyweight.model": [[146, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Model"]], "output_state (model attribute)": [[147, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Model.output_state"], [157, "pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Model.output_state"], [167, "pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Model.output_state"], [188, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.output_state"], [231, "pymgipsim.VirtualPatient.Models.T1DM.IVP.Model.output_state"]], "pymgipsim.virtualpatient.models.multiscale.bodyweight.parameters": [[148, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Parameters"]], "as_array (parameters attribute)": [[149, "pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Parameters.as_array"], [159, "pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Parameters.as_array"], [169, "pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Parameters.as_array"], [190, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Parameters.as_array"], [233, "pymgipsim.VirtualPatient.Models.T1DM.IVP.Parameters.as_array"]], "pymgipsim.virtualpatient.models.multiscale.bodyweight.states": [[150, "module-pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.States"]], "pymgipsim.virtualpatient.models.physact": [[151, "module-pymgipsim.VirtualPatient.Models.Physact"]], "pymgipsim.virtualpatient.models.physact.activity2heartrate": [[152, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate"]], "pymgipsim.virtualpatient.models.physact.activity2heartrate.constants": [[153, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.CONSTANTS"]], "inputs (class in pymgipsim.virtualpatient.models.physact.activity2heartrate.inputs)": [[154, "pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Inputs.Inputs"], [155, "pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Inputs.Inputs"]], "pymgipsim.virtualpatient.models.physact.activity2heartrate.inputs": [[154, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Inputs"]], "model (class in pymgipsim.virtualpatient.models.physact.activity2heartrate.model)": [[156, "pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Model.Model"]], "pymgipsim.virtualpatient.models.physact.activity2heartrate.model": [[156, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Model"]], "pymgipsim.virtualpatient.models.physact.activity2heartrate.parameters": [[158, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Parameters"]], "pymgipsim.virtualpatient.models.physact.activity2heartrate.states": [[160, "module-pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.States"]], "states (class in pymgipsim.virtualpatient.models.physact.activity2heartrate.states)": [[161, "pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.States.States"]], "pymgipsim.virtualpatient.models.physact.heartrate2energyexp": [[162, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp"]], "pymgipsim.virtualpatient.models.physact.heartrate2energyexp.constants": [[163, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.CONSTANTS"]], "inputs (class in pymgipsim.virtualpatient.models.physact.heartrate2energyexp.inputs)": [[164, "pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Inputs.Inputs"], [165, "pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Inputs.Inputs"]], "pymgipsim.virtualpatient.models.physact.heartrate2energyexp.inputs": [[164, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Inputs"]], "model (class in pymgipsim.virtualpatient.models.physact.heartrate2energyexp.model)": [[166, "pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Model.Model"]], "pymgipsim.virtualpatient.models.physact.heartrate2energyexp.model": [[166, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Model"]], "pymgipsim.virtualpatient.models.physact.heartrate2energyexp.parameters": [[168, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Parameters"]], "pymgipsim.virtualpatient.models.physact.heartrate2energyexp.states": [[170, "module-pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.States"]], "states (class in pymgipsim.virtualpatient.models.physact.heartrate2energyexp.states)": [[171, "pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.States.States"]], "pymgipsim.virtualpatient.models.t1dm": [[172, "module-pymgipsim.VirtualPatient.Models.T1DM"]], "pymgipsim.virtualpatient.models.t1dm.exthovorka": [[173, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka"]], "nominal_ag (in module pymgipsim.virtualpatient.models.t1dm.exthovorka.constants)": [[174, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_AG"], [175, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_AG"]], "nominal_bw (in module pymgipsim.virtualpatient.models.t1dm.exthovorka.constants)": [[174, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_BW"], [176, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_BW"]], "nominal_k12 (in module pymgipsim.virtualpatient.models.t1dm.exthovorka.constants)": [[174, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_k12"], [177, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_k12"]], "nominal_ka1 (in module pymgipsim.virtualpatient.models.t1dm.exthovorka.constants)": [[174, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_ka1"], [178, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_ka1"]], "nominal_ka2 (in module pymgipsim.virtualpatient.models.t1dm.exthovorka.constants)": [[174, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_ka2"], [179, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_ka2"]], "nominal_ka3 (in module pymgipsim.virtualpatient.models.t1dm.exthovorka.constants)": [[174, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_ka3"], [180, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS.NOMINAL_ka3"]], "pymgipsim.virtualpatient.models.t1dm.exthovorka.constants": [[174, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS"]], "inputs (class in pymgipsim.virtualpatient.models.t1dm.exthovorka.inputs)": [[181, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.Inputs"]], "pymgipsim.virtualpatient.models.t1dm.exthovorka.inputs": [[181, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs"]], "ufastcarbs (inputs attribute)": [[181, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.Inputs.uFastCarbs"], [183, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.uFastCarbs"]], "uhr (inputs attribute)": [[181, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.Inputs.uHR"], [184, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.uHR"]], "uinsulin (inputs attribute)": [[181, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.Inputs.uInsulin"], [185, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.uInsulin"]], "uslowcarbs (inputs attribute)": [[181, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.Inputs.uSlowCarbs"], [186, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.uSlowCarbs"]], "unknown (inputs attribute)": [[181, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs.Inputs.unknown"]], "model (class in pymgipsim.virtualpatient.models.t1dm.exthovorka.model)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model"]], "get_basal_equilibrium() (model static method)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model.get_basal_equilibrium"], [230, "pymgipsim.VirtualPatient.Models.T1DM.IVP.Model.Model.get_basal_equilibrium"]], "initial_conditions (model attribute)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model.initial_conditions"]], "inputs (model attribute)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model.inputs"]], "model() (model static method)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model.model"]], "parameters (model attribute)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model.parameters"]], "pymgipsim.virtualpatient.models.t1dm.exthovorka.model": [[187, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model"]], "sampling_time (model attribute)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model.sampling_time"]], "states (model attribute)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model.states"]], "time (model attribute)": [[187, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model.Model.time"]], "parameters (class in pymgipsim.virtualpatient.models.t1dm.exthovorka.parameters)": [[189, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Parameters.Parameters"]], "fromjson() (parameters method)": [[189, "pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Parameters.Parameters.fromJSON"]], "pymgipsim.virtualpatient.models.t1dm.exthovorka.parameters": [[189, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Parameters"]], "pymgipsim.virtualpatient.models.t1dm.exthovorka.states": [[191, "module-pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.States"]], "pymgipsim.virtualpatient.models.t1dm.ivp": [[192, "module-pymgipsim.VirtualPatient.Models.T1DM.IVP"]], "max_bw (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_BW"], [194, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_BW"]], "max_ci (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_CI"], [195, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_CI"]], "max_egp (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_EGP"], [196, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_EGP"]], "max_gezi (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_GEZI"], [197, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_GEZI"]], "max_p2 (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_P2"], [198, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_P2"]], "max_si (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_SI"], [199, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_SI"]], "max_tau1 (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_TAU1"], [200, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_TAU1"]], "max_tau2 (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_TAU2"], [201, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_TAU2"]], "max_taud (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_TAUD"], [202, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_TAUD"]], "max_vg (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_VG"], [203, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MAX_VG"]], "min_bw (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_BW"], [204, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_BW"]], "min_ci (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_CI"], [205, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_CI"]], "min_egp (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_EGP"], [206, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_EGP"]], "min_gezi (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_GEZI"], [207, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_GEZI"]], "min_p2 (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_P2"], [208, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_P2"]], "min_si (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_SI"], [209, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_SI"]], "min_tau1 (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_TAU1"], [210, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_TAU1"]], "min_tau2 (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_TAU2"], [211, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_TAU2"]], "min_taud (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_TAUD"], [212, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_TAUD"]], "min_vg (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_VG"], [213, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.MIN_VG"]], "nominal_bw (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_BW"], [214, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_BW"]], "nominal_ci (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_CI"], [215, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_CI"]], "nominal_egp (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_EGP"], [216, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_EGP"]], "nominal_gezi (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_GEZI"], [217, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_GEZI"]], "nominal_p2 (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_P2"], [218, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_P2"]], "nominal_si (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_SI"], [219, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_SI"]], "nominal_tau1 (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_TAU1"], [220, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_TAU1"]], "nominal_tau2 (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_TAU2"], [221, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_TAU2"]], "nominal_taud (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_TAUD"], [222, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_TAUD"]], "nominal_vg (in module pymgipsim.virtualpatient.models.t1dm.ivp.constants)": [[193, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_VG"], [223, "pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS.NOMINAL_VG"]], "pymgipsim.virtualpatient.models.t1dm.ivp.constants": [[193, "module-pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS"]], "inputs (class in pymgipsim.virtualpatient.models.t1dm.ivp.inputs)": [[224, "pymgipsim.VirtualPatient.Models.T1DM.IVP.Inputs.Inputs"]], "pymgipsim.virtualpatient.models.t1dm.ivp.inputs": [[224, "module-pymgipsim.VirtualPatient.Models.T1DM.IVP.Inputs"]], "ra (inputs attribute)": [[225, "pymgipsim.VirtualPatient.Models.T1DM.IVP.Inputs.Ra"]], "basal_insulin (inputs attribute)": [[226, "pymgipsim.VirtualPatient.Models.T1DM.IVP.Inputs.basal_insulin"]], "bolus_insulin (inputs attribute)": [[227, "pymgipsim.VirtualPatient.Models.T1DM.IVP.Inputs.bolus_insulin"]], "carb (inputs attribute)": [[228, "pymgipsim.VirtualPatient.Models.T1DM.IVP.Inputs.carb"]], "taud (inputs attribute)": [[229, "pymgipsim.VirtualPatient.Models.T1DM.IVP.Inputs.taud"]], "model (class in pymgipsim.virtualpatient.models.t1dm.ivp.model)": [[230, "pymgipsim.VirtualPatient.Models.T1DM.IVP.Model.Model"]], "pymgipsim.virtualpatient.models.t1dm.ivp.model": [[230, "module-pymgipsim.VirtualPatient.Models.T1DM.IVP.Model"]], "pymgipsim.virtualpatient.models.t1dm.ivp.parameters": [[232, "module-pymgipsim.VirtualPatient.Models.T1DM.IVP.Parameters"]], "pymgipsim.virtualpatient.models.t1dm.ivp.states": [[234, "module-pymgipsim.VirtualPatient.Models.T1DM.IVP.States"]], "virtualcohort (class in pymgipsim.virtualpatient.virtualpatient)": [[235, "pymgipsim.VirtualPatient.VirtualPatient.VirtualCohort"], [236, "pymgipsim.VirtualPatient.VirtualPatient.VirtualCohort"]], "pymgipsim.virtualpatient.virtualpatient": [[235, "module-pymgipsim.VirtualPatient.VirtualPatient"]], "pymgipsim.generate_plots": [[237, "module-pymgipsim.generate_plots"]], "generate_plots_main() (in module pymgipsim.generate_plots)": [[238, "pymgipsim.generate_plots.generate_plots_main"]]}}) \ No newline at end of file diff --git a/usage.html b/usage.html index be13d38..3bafcdf 100644 --- a/usage.html +++ b/usage.html @@ -84,12 +84,30 @@

Quickstart

-

To get started immediately, run interface_cmd.py to activate a command line interface (CLI).

-
-

Run the simulator

+
+

Requirements

+
    +

  • Python 3.12.0

    • +

  • Dependencies can be installed via pip install -r requirements.txt

    • +
+
+
+

Graphical User Interface

+

Provides a graphical user interface in a web app.

+

To run it locally:

+

blocks:

+
> streamlit run interface_gui.py
+
+
+_images/gui.gif +
+
+

Command Line - Interactive

+

Provides an interactive prompt environment to set the simulation settings.

+

To get started run interface_cmd.py to activate a command line interface (CLI).

  • simulate This command is used to run the simulation with the assigned settings.

    • -

  • Using just simulate generates a default scenario (defaults).

    • +

  • Using just simulate generates a default scenario.

  • Predefined scenarios are available in the ./Scenarios/ folder. To use one of them, use load -sn <scenario name> and simulate.

  • Results are stored in the directory ./SimulationResults/<results folder with datetime from simulation run time>

@@ -102,6 +120,12 @@

Plot the resultsplot with no arguments generates and saves all figures without displaying them.

  • plot --all both generates and displays all figures.

    • +    imgs/cmd.gif +

    +
    +

    Command Line - single command

    +

    Simulation settings are defined in a single command line.

    +

    Start by running interface_cli.py [OPTIONS].