From 0bc839d93d50b42e33893aed5c26d6491bced30f Mon Sep 17 00:00:00 2001
From: shakson-isaac <shakson_isaac@g.harvard.edu>
Date: Wed, 26 Jul 2023 15:13:31 -0400
Subject: [PATCH] Updated package description

---
 .gitignore          | 1 +
 DESCRIPTION         | 3 ++-
 NAMESPACE           | 5 +++++
 R/import_packages.R | 5 +++--
 4 files changed, 11 insertions(+), 3 deletions(-)

diff --git a/.gitignore b/.gitignore
index 13fde90..5ea3a50 100644
--- a/.gitignore
+++ b/.gitignore
@@ -7,3 +7,4 @@ improvements
 READMEupdate.md
 RData/
 .DS_Store
+.DS_Store
diff --git a/DESCRIPTION b/DESCRIPTION
index 11dd659..8992776 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,13 +1,14 @@
 Package: SCENT
 Type: Package
 Title: Single-Cell ENhancer Target (SCENT) gene mapping for single cell multimodal data 
-Version: 0.1.0
+Version: 1.0.0
 Author: Saori Sakaue and Shakson Isaac
 Maintainer: Shakson Isaac <shakson_isaac@g.harvard.edu>
 Description: R package that contains functions for the SCENT algorithm. SCENT uses 
     single-cell multimodal data (e.g., 10X Multiome RNA/ATAC) and links 
     ATAC-seq peaks (putative enhancers) to their target genes by modeling association
     between chromatin accessibility and gene expression across individual single cells.
+Depends: R (>= 3.5.0)
 Imports:
     methods, 
     Hmisc, 
diff --git a/NAMESPACE b/NAMESPACE
index 4881c5e..76629e6 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -19,3 +19,8 @@ import(lme4)
 import(methods)
 import(parallel)
 import(stringr)
+importFrom(stats,as.formula)
+importFrom(stats,coef)
+importFrom(stats,glm)
+importFrom(stats,vcov)
+importFrom(utils,write.table)
diff --git a/R/import_packages.R b/R/import_packages.R
index cd87f3a..37f7d39 100644
--- a/R/import_packages.R
+++ b/R/import_packages.R
@@ -1,5 +1,6 @@
-#' @import methods Hmisc data.table stringr
-#' @import R.utils
+#' @import methods Hmisc R.utils data.table stringr
 #' @import lme4 boot MASS parallel
 #' @import Matrix
+#' @importFrom stats as.formula coef glm vcov
+#' @importFrom utils write.table
 NULL