diff --git a/README.md b/README.md index b31a9f7..29a3611 100644 --- a/README.md +++ b/README.md @@ -6,7 +6,7 @@ Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA (*beta version*) -The manuscript will soon appear at medRxiv! (Sakaue et al. "**Tissue-specific enhancer-gene maps from multimodal single-cell data identify causal disease alleles**") +The manuscript is now publised in *Nature Genetics*! (Sakaue et al. ["**Tissue-specific enhancer-gene maps from multimodal single-cell data identify causal disease alleles**"](https://www.nature.com/articles/s41588-024-01682-1)) @@ -192,6 +192,11 @@ Arguments in the bash file are user specified as follows: |4 | celltype |User specified celltype (ex. "Tcells") to run the SCENT algorithm | |5 | output_dir | User specified directory to output the SCENT results to aggregate once completed. | +### Enhancer-gene links from the paper + +SCENT enhancer-gene linkages (FDR<10%) from the 8 datasets that we described in the paper can be downloaded from the following dropbox link. + +https://www.dropbox.com/scl/fo/g20tfnwkcuhib4a6z1wp4/ABYaK5s8bwTLnzrJ0KoZn48?rlkey=j1s5365gso53r2v2dsdynnsr2&st=5np1fq0a&dl=0 ### Contact