Create reference using harmonypy results

[yyoshiaki]

Hi, thank you for developing a great tool!

I have a reference panel made by using scanpy and harmonypy, and considering performing query mapping of seurat objects using symphony. Do you have any experience exporting anndata objects made by harmonypy to symphony reference in R? If so, could you please share the procedures?

Best,
Yoshi

[joycekang]

Hi Yoshi,
There is now a python version of symphony that should work with harmonypy, written by another group. You can check it out here: https://github.com/potulabe/symphonypy

[yyoshiaki]

Thank you very much! I'll try it.