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UMI count import from MIXCR #425

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agrehli opened this issue Feb 26, 2025 · 0 comments
Open

UMI count import from MIXCR #425

agrehli opened this issue Feb 26, 2025 · 0 comments

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@agrehli
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agrehli commented Feb 26, 2025

🚀 Feature

Importing uniqueMoleculeCounts instead of readCounts from MIXCR exported clones/clonotypes

Motivation

Currently the repload function automatically imports the readCount column from MIXCR exported clonotype/clones. It ignores the uniqueMoleculeCounts column that is created by MIXCR (v4.7) that is available when using UMIs in the design.

Pitch

It would be niche to have an additional argument in the repload function that allows to import the UMI counts instead of readCounts.

Alternatives

The current workaround is to modify the MIXCR output before loading....

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