diff --git a/README.Rmd b/README.Rmd index a053a57..5ffd43f 100644 --- a/README.Rmd +++ b/README.Rmd @@ -55,9 +55,9 @@ On a local machine the user should have installed the following programs as well - *NASAaccess* R package needs a user registration access with [Earthdata](https://www.earthdata.nasa.gov/). Users should set up a registration account(s) with [Earthdata](https://www.earthdata.nasa.gov/) login as well as well as authorizing [NASA](https://www.nasa.gov/ "The National Aeronautics and Space Administration") [GES DISC](https://disc.gsfc.nasa.gov/) data access. Please refer to for further details. -- Installing [*curl*](https://curl.se/) software . Since Mac users have [*curl*](https://curl.se/) as part of macOS build, Windows users should make sure that their local machines build have [*curl*](https://curl.se/) installed properly. +- [*curl*](https://curl.se/) software . Since Mac users have [*curl*](https://curl.se/) as part of macOS build, Windows users should make sure that their local machines build have [*curl*](https://curl.se/) installed properly. -- Checking if you can run [*curl*](https://curl.se/) from your command prompt. Type `curl --help` and you should see the help pages for the [*curl*](https://curl.se/) program once everything is defined correctly. + - Checking if you can run [*curl*](https://curl.se/) from your command prompt. Type `curl --help` and you should see the help pages for the [*curl*](https://curl.se/) program once everything is defined correctly. - Within Rstudio or R terminal run the following commands to install *NASAaccess*: @@ -67,13 +67,12 @@ On a local machine the user should have installed the following programs as well - `library(NASAaccess)` -Within the Rstudio help tab the user can verify that the package has been installed and browse the help pages of the various functions of *NASAaccess*. +Within the Rstudio help tab the user can verify that the package has been installed and browse the help pages of the various functions of *NASAaccess*. The [GES DISC](https://disc.gsfc.nasa.gov/) user registration access logging information will be processed by masking (i.e., not displaying the lieteral typed text as input) on most but not all platforms. Without providing [GES DISC](https://disc.gsfc.nasa.gov/) user registration access logging information, the user will receive '*You need to provide your Earthdata GES DISC login to proceed...*' message. ### **Conda Package** +- *NASAaccess* conda package needs a user registration access with [Earthdata](https://www.earthdata.nasa.gov/). Users should set up a registration account(s) with [Earthdata](https://www.earthdata.nasa.gov/) login as well as well as authorizing [NASA](https://www.nasa.gov/ "The National Aeronautics and Space Administration") [GES DISC](https://disc.gsfc.nasa.gov/) data access. Please refer to for further details. -- After registration with [Earthdata](https://www.earthdata.nasa.gov/) *NASAaccess* software package users should create a reference file (*.netrc*) with [Earthdata](https://www.earthdata.nasa.gov/) credentials stored in it to streamline the retrieval access from [NASA](https://www.nasa.gov/ "The National Aeronautics and Space Administration") servers. - - - Creating the *.netrc* file at the user machine *Home* directory and storing the user [NASA](https://www.nasa.gov/ "The National Aeronautics and Space Administration") [GES DISC](https://disc.gsfc.nasa.gov/) logging information in it is needed to execute the *NASAaccess* package commands. Accessing data from NASA servers is further explained at [Here](https://wiki.earthdata.nasa.gov/display/EL/How+To+Access+Data+With+cURL+And+Wget). + - Creating the *.netrc* file at the user machine *Home* directory and storing the user [NASA](https://www.nasa.gov/ "The National Aeronautics and Space Administration") [GES DISC](https://disc.gsfc.nasa.gov/) logging information in it is done automatically to execute the *NASAaccess* package commands. Accessing data from NASA servers is further explained at [Here](https://wiki.earthdata.nasa.gov/display/EL/How+To+Access+Data+With+cURL+And+Wget). The [GES DISC](https://disc.gsfc.nasa.gov/) user registration access logging information will be processed by masking in the terminal on any major OS. Without providing [GES DISC](https://disc.gsfc.nasa.gov/) user registration access logging information, the user will receive '*You need to provide your Earthdata GES DISC login to proceed...*' message. - To install *NASAaccess* package in a conda environment run the following: diff --git a/README.md b/README.md index 0d572aa..21c3e37 100644 --- a/README.md +++ b/README.md @@ -81,15 +81,15 @@ local machine: [GES DISC](https://disc.gsfc.nasa.gov/) data access. Please refer to for further details. -- Installing [*curl*](https://curl.se/) software . Since Mac users have +- [*curl*](https://curl.se/) software . Since Mac users have [*curl*](https://curl.se/) as part of macOS build, Windows users should make sure that their local machines build have [*curl*](https://curl.se/) installed properly. -- Checking if you can run [*curl*](https://curl.se/) from your command - prompt. Type `curl --help` and you should see the help pages for the - [*curl*](https://curl.se/) program once everything is defined - correctly. + - Checking if you can run [*curl*](https://curl.se/) from your command + prompt. Type `curl --help` and you should see the help pages for the + [*curl*](https://curl.se/) program once everything is defined + correctly. - Within Rstudio or R terminal run the following commands to install *NASAaccess*: @@ -102,24 +102,38 @@ local machine: Within the Rstudio help tab the user can verify that the package has been installed and browse the help pages of the various functions of -*NASAaccess*. +*NASAaccess*. The [GES DISC](https://disc.gsfc.nasa.gov/) user +registration access logging information will be processed by masking +(i.e., not displaying the lieteral typed text as input) on most but not +all platforms. Without providing [GES DISC](https://disc.gsfc.nasa.gov/) +user registration access logging information, the user will receive +‘*You need to provide your Earthdata GES DISC login to proceed…*’ +message. ### **Conda Package** -- After registration with [Earthdata](https://www.earthdata.nasa.gov/) - *NASAaccess* software package users should create a reference file - (*.netrc*) with [Earthdata](https://www.earthdata.nasa.gov/) - credentials stored in it to streamline the retrieval access from +- *NASAaccess* conda package needs a user registration access with + [Earthdata](https://www.earthdata.nasa.gov/). Users should set up a + registration account(s) with + [Earthdata](https://www.earthdata.nasa.gov/) login as well as well as + authorizing [NASA](https://www.nasa.gov/ "The National Aeronautics and Space Administration") - servers. + [GES DISC](https://disc.gsfc.nasa.gov/) data access. Please refer to + for further details. - Creating the *.netrc* file at the user machine *Home* directory and storing the user [NASA](https://www.nasa.gov/ "The National Aeronautics and Space Administration") [GES DISC](https://disc.gsfc.nasa.gov/) logging information in it is - needed to execute the *NASAaccess* package commands. Accessing data - from NASA servers is further explained at + done automatically to execute the *NASAaccess* package commands. + Accessing data from NASA servers is further explained at [Here](https://wiki.earthdata.nasa.gov/display/EL/How+To+Access+Data+With+cURL+And+Wget). + The [GES DISC](https://disc.gsfc.nasa.gov/) user registration access + logging information will be processed by masking in the terminal on + any major OS. Without providing [GES + DISC](https://disc.gsfc.nasa.gov/) user registration access logging + information, the user will receive ‘*You need to provide your + Earthdata GES DISC login to proceed…*’ message. - To install *NASAaccess* package in a conda environment run the following: @@ -148,7 +162,7 @@ citation(package = 'NASAaccess') #> To cite package 'NASAaccess' in publications use: #> #> Mohammed I (2023). _NASAaccess: Downloading and Reformatting Tool for -#> NASA Earth Observation Data Products_. R package version 3.3.1, +#> NASA Earth Observation Data Products_. R package version 3.4.2, #> . #> #> A BibTeX entry for LaTeX users is @@ -159,7 +173,7 @@ citation(package = 'NASAaccess') #> year = {2023}, #> institution = {National Aeronautics and Space Administration, Goddard Space Flight Center}, #> address = {Greenbelt, Maryland}, -#> note = {R package version 3.3.1}, +#> note = {R package version 3.4.2}, #> url = {https://github.com/nasa/NASAaccess}, #> } ``` diff --git a/docs/404.html b/docs/404.html index aa717b8..ba0da80 100644 --- a/docs/404.html +++ b/docs/404.html @@ -32,7 +32,7 @@ NASAaccess - 3.4.1 + 3.4.2 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index 620e9b8..0709d0d 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -17,7 +17,7 @@ NASAaccess - 3.4.1 + 3.4.2 diff --git a/docs/articles/About.html b/docs/articles/About.html index a8027ce..b2880b3 100644 --- a/docs/articles/About.html +++ b/docs/articles/About.html @@ -33,7 +33,7 @@ NASAaccess - 3.4.1 + 3.4.2 @@ -94,7 +94,7 @@

Introduction

Ibrahim N. Mohammed

-

2023-03-21

+

2023-04-17

Source: vignettes/About.Rmd @@ -152,13 +152,13 @@

Built with#> #> loaded via a namespace (and not attached): #> [1] rstudioapi_0.14 knitr_1.42 magrittr_2.0.3 R6_2.5.1 -#> [5] ragg_1.2.5 rlang_1.1.0 fastmap_1.1.0 stringr_1.5.0 -#> [9] tools_4.2.2 xfun_0.37 cli_3.6.0 jquerylib_0.1.4 -#> [13] systemfonts_1.0.4 htmltools_0.5.4 yaml_2.3.7 digest_0.6.31 +#> [5] ragg_1.2.5 rlang_1.1.0 fastmap_1.1.1 stringr_1.5.0 +#> [9] tools_4.2.2 xfun_0.38 cli_3.6.1 jquerylib_0.1.4 +#> [13] systemfonts_1.0.4 htmltools_0.5.5 yaml_2.3.7 digest_0.6.31 #> [17] rprojroot_2.0.3 lifecycle_1.0.3 pkgdown_2.0.7 textshaping_0.3.6 -#> [21] purrr_1.0.1 sass_0.4.5 vctrs_0.5.2 fs_1.6.1 -#> [25] memoise_2.0.1 glue_1.6.2 cachem_1.0.6 evaluate_0.20 -#> [29] rmarkdown_2.20 stringi_1.7.12 compiler_4.2.2 bslib_0.4.2 +#> [21] purrr_1.0.1 sass_0.4.5 vctrs_0.6.1 fs_1.6.1 +#> [25] memoise_2.0.1 glue_1.6.2 cachem_1.0.7 evaluate_0.20 +#> [29] rmarkdown_2.21 stringi_1.7.12 compiler_4.2.2 bslib_0.4.2 #> [33] desc_1.4.2 jsonlite_1.8.4 diff --git a/docs/articles/GLDAS.html b/docs/articles/GLDAS.html index 8a1f9c2..8be2e9c 100644 --- a/docs/articles/GLDAS.html +++ b/docs/articles/GLDAS.html @@ -33,7 +33,7 @@ NASAaccess - 3.4.1 + 3.4.2 @@ -94,7 +94,7 @@

Getting started with GLDAS data

Ibrahim N. Mohammed

-

2023-03-21

+

2023-04-17

Source: vignettes/GLDAS.Rmd @@ -237,24 +237,24 @@

Built with#> [1] stats graphics grDevices utils datasets methods base #> #> other attached packages: -#> [1] ggplot2_3.4.1 sf_1.0-9 raster_3.6-20 sp_1.6-0 +#> [1] ggplot2_3.4.2 sf_1.0-12 raster_3.6-20 sp_1.6-0 #> #> loaded via a namespace (and not attached): -#> [1] tidyselect_1.2.0 terra_1.7-18 xfun_0.37 bslib_0.4.2 -#> [5] purrr_1.0.1 lattice_0.20-45 colorspace_2.1-0 vctrs_0.5.2 -#> [9] generics_0.1.3 htmltools_0.5.4 yaml_2.3.7 utf8_1.2.3 +#> [1] tidyselect_1.2.0 terra_1.7-23 xfun_0.38 bslib_0.4.2 +#> [5] purrr_1.0.1 lattice_0.20-45 colorspace_2.1-0 vctrs_0.6.1 +#> [9] generics_0.1.3 htmltools_0.5.5 yaml_2.3.7 utf8_1.2.3 #> [13] rlang_1.1.0 e1071_1.7-13 pkgdown_2.0.7 jquerylib_0.1.4 -#> [17] pillar_1.8.1 withr_2.5.0 glue_1.6.2 DBI_1.1.3 -#> [21] lifecycle_1.0.3 stringr_1.5.0 munsell_0.5.0 gtable_0.3.1 +#> [17] pillar_1.9.0 withr_2.5.0 glue_1.6.2 DBI_1.1.3 +#> [21] lifecycle_1.0.3 stringr_1.5.0 munsell_0.5.0 gtable_0.3.3 #> [25] ragg_1.2.5 codetools_0.2-18 memoise_2.0.1 evaluate_0.20 -#> [29] knitr_1.42 fastmap_1.1.0 class_7.3-20 fansi_1.0.4 +#> [29] knitr_1.42 fastmap_1.1.1 class_7.3-20 fansi_1.0.4 #> [33] highr_0.10 Rcpp_1.0.10 KernSmooth_2.23-20 scales_1.2.1 -#> [37] classInt_0.4-8 cachem_1.0.6 desc_1.4.2 jsonlite_1.8.4 +#> [37] classInt_0.4-9 cachem_1.0.7 desc_1.4.2 jsonlite_1.8.4 #> [41] farver_2.1.1 systemfonts_1.0.4 fs_1.6.1 textshaping_0.3.6 -#> [45] digest_0.6.31 stringi_1.7.12 dplyr_1.1.0 grid_4.2.2 -#> [49] rprojroot_2.0.3 rgdal_1.6-5 cli_3.6.0 tools_4.2.2 -#> [53] magrittr_2.0.3 sass_0.4.5 proxy_0.4-27 tibble_3.1.8 -#> [57] pkgconfig_2.0.3 rmarkdown_2.20 rstudioapi_0.14 R6_2.5.1 +#> [45] digest_0.6.31 stringi_1.7.12 dplyr_1.1.1 grid_4.2.2 +#> [49] rprojroot_2.0.3 rgdal_1.6-5 cli_3.6.1 tools_4.2.2 +#> [53] magrittr_2.0.3 sass_0.4.5 proxy_0.4-27 tibble_3.2.1 +#> [57] pkgconfig_2.0.3 rmarkdown_2.21 rstudioapi_0.14 R6_2.5.1 #> [61] units_0.8-1 compiler_4.2.2 diff --git a/docs/articles/GLDAS_files/figure-html/unnamed-chunk-4-1.png b/docs/articles/GLDAS_files/figure-html/unnamed-chunk-4-1.png index ef9c8bf..48c8c6e 100644 Binary files a/docs/articles/GLDAS_files/figure-html/unnamed-chunk-4-1.png and b/docs/articles/GLDAS_files/figure-html/unnamed-chunk-4-1.png differ diff --git a/docs/articles/GLDAS_files/figure-html/unnamed-chunk-7-1.png b/docs/articles/GLDAS_files/figure-html/unnamed-chunk-7-1.png index fa9b026..5f926af 100644 Binary files a/docs/articles/GLDAS_files/figure-html/unnamed-chunk-7-1.png and b/docs/articles/GLDAS_files/figure-html/unnamed-chunk-7-1.png differ diff --git a/docs/articles/GPM.html b/docs/articles/GPM.html index b86f870..ce8c6fb 100644 --- a/docs/articles/GPM.html +++ b/docs/articles/GPM.html @@ -33,7 +33,7 @@ NASAaccess - 3.4.1 + 3.4.2 @@ -94,7 +94,7 @@

Getting started with GPM data

Ibrahim N. Mohammed

-

2023-03-21

+

2023-04-17

Source: vignettes/GPM.Rmd @@ -125,29 +125,29 @@

Basic use
 library(ggmap)
 #> Loading required package: ggplot2
-#> ℹ Google's Terms of Service: <
-#> ℹ Please cite ggmap if you use it! Use `citation("ggmap")` for details.
+#> ℹ Google's Terms of Service: <https://mapsplatform.google.com>
+#> ℹ Please cite ggmap if you use it! Use `citation("ggmap")` for details.
 library(raster)
-#> Loading required package: sp
+#> Loading required package: sp
 library(ggplot2)
 library(rgdal)
-#> Please note that rgdal will be retired during 2023,
-#> plan transition to sf/stars/terra functions using GDAL and PROJ
-#> at your earliest convenience.
-#> See https://r-spatial.org/r/2022/04/12/evolution.html and https://github.com/r-spatial/evolution
-#> rgdal: version: 1.6-5, (SVN revision 1199)
-#> Geospatial Data Abstraction Library extensions to R successfully loaded
-#> Loaded GDAL runtime: GDAL 3.4.2, released 2022/03/08
-#> Path to GDAL shared files: /Users/imohamme/Library/R/x86_64/4.2/library/rgdal/gdal
-#> GDAL binary built with GEOS: FALSE 
-#> Loaded PROJ runtime: Rel. 8.2.1, January 1st, 2022, [PJ_VERSION: 821]
-#> Path to PROJ shared files: /Users/imohamme/Library/R/x86_64/4.2/library/rgdal/proj
-#> PROJ CDN enabled: FALSE
-#> Linking to sp version:1.6-0
-#> To mute warnings of possible GDAL/OSR exportToProj4() degradation,
-#> use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal.
+#> Please note that rgdal will be retired during 2023,
+#> plan transition to sf/stars/terra functions using GDAL and PROJ
+#> at your earliest convenience.
+#> See https://r-spatial.org/r/2022/04/12/evolution.html and https://github.com/r-spatial/evolution
+#> rgdal: version: 1.6-5, (SVN revision 1199)
+#> Geospatial Data Abstraction Library extensions to R successfully loaded
+#> Loaded GDAL runtime: GDAL 3.4.2, released 2022/03/08
+#> Path to GDAL shared files: /Users/imohamme/Library/R/x86_64/4.2/library/rgdal/gdal
+#> GDAL binary built with GEOS: FALSE 
+#> Loaded PROJ runtime: Rel. 8.2.1, January 1st, 2022, [PJ_VERSION: 821]
+#> Path to PROJ shared files: /Users/imohamme/Library/R/x86_64/4.2/library/rgdal/proj
+#> PROJ CDN enabled: FALSE
+#> Linking to sp version:1.6-0
+#> To mute warnings of possible GDAL/OSR exportToProj4() degradation,
+#> use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal.
 
-#Reading input data
+#Reading input data
 dem_path <- system.file("extdata", 
                         "DEM_TX.tif", 
                         package = "NASAaccess")
@@ -162,26 +162,26 @@ 
Basic useshape <- rgdal::readOGR(shape_path)
-#> Warning: OGR support is provided by the sf and terra packages among others
-#> Warning: OGR support is provided by the sf and terra packages among others
-#> Warning: OGR support is provided by the sf and terra packages among others
-#> Warning: OGR support is provided by the sf and terra packages among others
-#> Warning: OGR support is provided by the sf and terra packages among others
-#> Warning: OGR support is provided by the sf and terra packages among others
-#> Warning: OGR support is provided by the sf and terra packages among others
-#> OGR data source with driver: ESRI Shapefile 
-#> Source: "/Users/imohamme/Library/R/x86_64/4.2/library/NASAaccess/extdata/basin.shp", layer: "basin"
-#> with 1 features
-#> It has 4 fields
-#> Integer64 fields read as strings:  OBJECTID disID
+#> Warning: OGR support is provided by the sf and terra packages among others
+#> Warning: OGR support is provided by the sf and terra packages among others
+#> Warning: OGR support is provided by the sf and terra packages among others
+#> Warning: OGR support is provided by the sf and terra packages among others
+#> Warning: OGR support is provided by the sf and terra packages among others
+#> Warning: OGR support is provided by the sf and terra packages among others
+#> Warning: OGR support is provided by the sf and terra packages among others
+#> OGR data source with driver: ESRI Shapefile 
+#> Source: "/Users/imohamme/Library/R/x86_64/4.2/library/NASAaccess/extdata/basin.shp", layer: "basin"
+#> with 1 features
+#> It has 4 fields
+#> Integer64 fields read as strings:  OBJECTID disID
 shape.df <- ggplot2::fortify(shape)
-#> Regions defined for each Polygons
+#> Regions defined for each Polygons
 
 
 
 
 
-#plot the watershed data
+#plot the watershed data
 myMap <- get_stamenmap(bbox = c(left = -96,
                                 bottom = 29.7,
                                 right = -95.2,
@@ -189,18 +189,18 @@ 
Basic use= "terrain", 
                                             crop = TRUE,
                                              zoom = 10)
-#> ℹ Map tiles by Stamen Design, under CC BY 3.0. Data by OpenStreetMap, under ODbL.
+#> ℹ Map tiles by Stamen Design, under CC BY 3.0. Data by OpenStreetMap, under ODbL.
 
 
 ggmap(myMap) +
   geom_polygon(data = shape.df, 
                aes(x = long, y = lat, group = group), 
                fill = NA, size = 0.5, color = 'red')
-#> Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
-#> ℹ Please use `linewidth` instead.
-#> This warning is displayed once every 8 hours.
-#> Call `lifecycle::last_lifecycle_warnings()` to see where this warning was
-#> generated.
+#> Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. +#> ℹ Please use `linewidth` instead. +#> This warning is displayed once every 8 hours. +#> Call `lifecycle::last_lifecycle_warnings()` to see where this warning was +#> generated.

The geographic layout of the White Oak Bayou watershed example used in this demonstration is depicted above. Whiteoak Bayou is a tributary @@ -401,29 +401,29 @@

Built with#> [1] stats graphics grDevices utils datasets methods base #> #> other attached packages: -#> [1] rgdal_1.6-5 raster_3.6-20 sp_1.6-0 ggmap_3.0.1 ggplot2_3.4.1 +#> [1] rgdal_1.6-5 raster_3.6-20 sp_1.6-0 ggmap_3.0.2 ggplot2_3.4.2 #> #> loaded via a namespace (and not attached): -#> [1] terra_1.7-18 tidyselect_1.2.0 xfun_0.37 +#> [1] terra_1.7-23 tidyselect_1.2.0 xfun_0.38 #> [4] bslib_0.4.2 purrr_1.0.1 lattice_0.20-45 -#> [7] colorspace_2.1-0 vctrs_0.5.2 generics_0.1.3 -#> [10] htmltools_0.5.4 yaml_2.3.7 utf8_1.2.3 +#> [7] colorspace_2.1-0 vctrs_0.6.1 generics_0.1.3 +#> [10] htmltools_0.5.5 yaml_2.3.7 utf8_1.2.3 #> [13] rlang_1.1.0 pkgdown_2.0.7 jquerylib_0.1.4 -#> [16] pillar_1.8.1 glue_1.6.2 withr_2.5.0 +#> [16] pillar_1.9.0 glue_1.6.2 withr_2.5.0 #> [19] jpeg_0.1-10 lifecycle_1.0.3 plyr_1.8.8 -#> [22] stringr_1.5.0 munsell_0.5.0 gtable_0.3.1 +#> [22] stringr_1.5.0 munsell_0.5.0 gtable_0.3.3 #> [25] ragg_1.2.5 RgoogleMaps_1.4.5.3 codetools_0.2-18 #> [28] memoise_2.0.1 evaluate_0.20 labeling_0.4.2 -#> [31] knitr_1.42 fastmap_1.1.0 curl_5.0.0 +#> [31] knitr_1.42 fastmap_1.1.1 curl_5.0.0 #> [34] fansi_1.0.4 highr_0.10 Rcpp_1.0.10 -#> [37] scales_1.2.1 cachem_1.0.6 desc_1.4.2 +#> [37] scales_1.2.1 cachem_1.0.7 desc_1.4.2 #> [40] jsonlite_1.8.4 farver_2.1.1 systemfonts_1.0.4 #> [43] fs_1.6.1 textshaping_0.3.6 png_0.1-8 -#> [46] digest_0.6.31 stringi_1.7.12 dplyr_1.1.0 -#> [49] grid_4.2.2 rprojroot_2.0.3 cli_3.6.0 +#> [46] digest_0.6.31 stringi_1.7.12 dplyr_1.1.1 +#> [49] grid_4.2.2 rprojroot_2.0.3 cli_3.6.1 #> [52] tools_4.2.2 bitops_1.0-7 magrittr_2.0.3 -#> [55] sass_0.4.5 tibble_3.1.8 crayon_1.5.2 -#> [58] tidyr_1.3.0 pkgconfig_2.0.3 rmarkdown_2.20 +#> [55] sass_0.4.5 tibble_3.2.1 crayon_1.5.2 +#> [58] tidyr_1.3.0 pkgconfig_2.0.3 rmarkdown_2.21 #> [61] httr_1.4.5 rstudioapi_0.14 R6_2.5.1 #> [64] compiler_4.2.2 diff --git a/docs/articles/GPM_files/figure-html/unnamed-chunk-10-1.png b/docs/articles/GPM_files/figure-html/unnamed-chunk-10-1.png index d0b2865..665c25d 100644 Binary files a/docs/articles/GPM_files/figure-html/unnamed-chunk-10-1.png and b/docs/articles/GPM_files/figure-html/unnamed-chunk-10-1.png differ diff --git a/docs/articles/NEXGDDP-CMIP6.html b/docs/articles/NEXGDDP-CMIP6.html index 3fbd987..8666891 100644 --- a/docs/articles/NEXGDDP-CMIP6.html +++ b/docs/articles/NEXGDDP-CMIP6.html @@ -33,7 +33,7 @@ NASAaccess - 3.4.1 + 3.4.2 @@ -94,7 +94,7 @@

Getting started with NEXGDDP-CMIP6 data

Ibrahim N. Mohammed

-

2023-03-21

+

2023-04-17

Source: vignettes/NEXGDDP-CMIP6.Rmd @@ -187,23 +187,23 @@

Built with#> [1] stats graphics grDevices utils datasets methods base #> #> other attached packages: -#> [1] sf_1.0-9 raster_3.6-20 sp_1.6-0 +#> [1] sf_1.0-12 raster_3.6-20 sp_1.6-0 #> #> loaded via a namespace (and not attached): -#> [1] Rcpp_1.0.10 pillar_1.8.1 bslib_0.4.2 compiler_4.2.2 +#> [1] Rcpp_1.0.10 pillar_1.9.0 bslib_0.4.2 compiler_4.2.2 #> [5] jquerylib_0.1.4 class_7.3-20 tools_4.2.2 digest_0.6.31 -#> [9] tibble_3.1.8 jsonlite_1.8.4 evaluate_0.20 memoise_2.0.1 +#> [9] tibble_3.2.1 jsonlite_1.8.4 evaluate_0.20 memoise_2.0.1 #> [13] lifecycle_1.0.3 lattice_0.20-45 pkgconfig_2.0.3 rlang_1.1.0 -#> [17] cli_3.6.0 DBI_1.1.3 rstudioapi_0.14 rgdal_1.6-5 -#> [21] yaml_2.3.7 pkgdown_2.0.7 xfun_0.37 fastmap_1.1.0 -#> [25] e1071_1.7-13 terra_1.7-18 dplyr_1.1.0 stringr_1.5.0 +#> [17] cli_3.6.1 DBI_1.1.3 rstudioapi_0.14 rgdal_1.6-5 +#> [21] yaml_2.3.7 pkgdown_2.0.7 xfun_0.38 fastmap_1.1.1 +#> [25] e1071_1.7-13 terra_1.7-23 dplyr_1.1.1 stringr_1.5.0 #> [29] knitr_1.42 generics_0.1.3 desc_1.4.2 fs_1.6.1 -#> [33] vctrs_0.5.2 sass_0.4.5 systemfonts_1.0.4 tidyselect_1.2.0 -#> [37] classInt_0.4-8 rprojroot_2.0.3 grid_4.2.2 glue_1.6.2 -#> [41] R6_2.5.1 textshaping_0.3.6 fansi_1.0.4 rmarkdown_2.20 +#> [33] vctrs_0.6.1 sass_0.4.5 systemfonts_1.0.4 tidyselect_1.2.0 +#> [37] classInt_0.4-9 rprojroot_2.0.3 grid_4.2.2 glue_1.6.2 +#> [41] R6_2.5.1 textshaping_0.3.6 fansi_1.0.4 rmarkdown_2.21 #> [45] purrr_1.0.1 magrittr_2.0.3 units_0.8-1 codetools_0.2-18 -#> [49] htmltools_0.5.4 ragg_1.2.5 utf8_1.2.3 KernSmooth_2.23-20 -#> [53] proxy_0.4-27 stringi_1.7.12 cachem_1.0.6 +#> [49] htmltools_0.5.5 ragg_1.2.5 utf8_1.2.3 KernSmooth_2.23-20 +#> [53] proxy_0.4-27 stringi_1.7.12 cachem_1.0.7

References diff --git a/docs/articles/NEXGDDP.html b/docs/articles/NEXGDDP.html index ad5ea34..408de7c 100644 --- a/docs/articles/NEXGDDP.html +++ b/docs/articles/NEXGDDP.html @@ -33,7 +33,7 @@ NASAaccess - 3.4.1 + 3.4.2

@@ -94,7 +94,7 @@

Getting started with NEXGDDP-CMIP5 data

Ibrahim N. Mohammed

-

2023-03-21

+

2023-04-17

Source: vignettes/NEXGDDP.Rmd @@ -192,23 +192,23 @@

Built with#> [1] stats graphics grDevices utils datasets methods base #> #> other attached packages: -#> [1] sf_1.0-9 raster_3.6-20 sp_1.6-0 +#> [1] sf_1.0-12 raster_3.6-20 sp_1.6-0 #> #> loaded via a namespace (and not attached): -#> [1] Rcpp_1.0.10 pillar_1.8.1 bslib_0.4.2 compiler_4.2.2 +#> [1] Rcpp_1.0.10 pillar_1.9.0 bslib_0.4.2 compiler_4.2.2 #> [5] jquerylib_0.1.4 class_7.3-20 tools_4.2.2 digest_0.6.31 -#> [9] tibble_3.1.8 jsonlite_1.8.4 evaluate_0.20 memoise_2.0.1 +#> [9] tibble_3.2.1 jsonlite_1.8.4 evaluate_0.20 memoise_2.0.1 #> [13] lifecycle_1.0.3 lattice_0.20-45 pkgconfig_2.0.3 rlang_1.1.0 -#> [17] cli_3.6.0 DBI_1.1.3 rstudioapi_0.14 rgdal_1.6-5 -#> [21] yaml_2.3.7 pkgdown_2.0.7 xfun_0.37 fastmap_1.1.0 -#> [25] e1071_1.7-13 terra_1.7-18 dplyr_1.1.0 stringr_1.5.0 +#> [17] cli_3.6.1 DBI_1.1.3 rstudioapi_0.14 rgdal_1.6-5 +#> [21] yaml_2.3.7 pkgdown_2.0.7 xfun_0.38 fastmap_1.1.1 +#> [25] e1071_1.7-13 terra_1.7-23 dplyr_1.1.1 stringr_1.5.0 #> [29] knitr_1.42 generics_0.1.3 desc_1.4.2 fs_1.6.1 -#> [33] vctrs_0.5.2 sass_0.4.5 systemfonts_1.0.4 tidyselect_1.2.0 -#> [37] classInt_0.4-8 rprojroot_2.0.3 grid_4.2.2 glue_1.6.2 -#> [41] R6_2.5.1 textshaping_0.3.6 fansi_1.0.4 rmarkdown_2.20 +#> [33] vctrs_0.6.1 sass_0.4.5 systemfonts_1.0.4 tidyselect_1.2.0 +#> [37] classInt_0.4-9 rprojroot_2.0.3 grid_4.2.2 glue_1.6.2 +#> [41] R6_2.5.1 textshaping_0.3.6 fansi_1.0.4 rmarkdown_2.21 #> [45] purrr_1.0.1 magrittr_2.0.3 units_0.8-1 codetools_0.2-18 -#> [49] htmltools_0.5.4 ragg_1.2.5 utf8_1.2.3 KernSmooth_2.23-20 -#> [53] proxy_0.4-27 stringi_1.7.12 cachem_1.0.6 +#> [49] htmltools_0.5.5 ragg_1.2.5 utf8_1.2.3 KernSmooth_2.23-20 +#> [53] proxy_0.4-27 stringi_1.7.12 cachem_1.0.7

References diff --git a/docs/articles/index.html b/docs/articles/index.html index 4e9201a..88d19bb 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -17,7 +17,7 @@ NASAaccess - 3.4.1 + 3.4.2

diff --git a/docs/authors.html b/docs/authors.html index 028f698..3b36d69 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -17,7 +17,7 @@ NASAaccess - 3.4.1 + 3.4.2 @@ -85,7 +85,7 @@

Citation

Mohammed I (2023). NASAaccess: Downloading and Reformatting Tool for NASA Earth Observation Data Products. -R package version 3.4.1, https://github.com/nasa/NASAaccess. +R package version 3.4.2, https://github.com/nasa/NASAaccess. 

@Manual{,
   title = {{NASAaccess}: Downloading and Reformatting Tool for NASA Earth Observation Data Products},
@@ -93,7 +93,7 @@ 
Citation

   year = {2023},
   institution = {National Aeronautics and Space Administration, Goddard Space Flight Center},
   address = {Greenbelt, Maryland},
-  note = {R package version 3.4.1},
+  note = {R package version 3.4.2},
   url = {https://github.com/nasa/NASAaccess},
 }
diff --git a/docs/index.html b/docs/index.html index 1bc3188..cfec95b 100644 --- a/docs/index.html +++ b/docs/index.html @@ -36,7 +36,7 @@ NASAaccess - 3.4.1 + 3.4.2 @@ -137,8 +137,12 @@

  • Installing R software

  • Installing Rstudio software (OPTIONAL)

  • NASAaccess R package needs a user registration access with Earthdata. Users should set up a registration account(s) with Earthdata login as well as well as authorizing NASA GES DISC data access. Please refer to https://disc.gsfc.nasa.gov/data-access for further details.

    • -

  • Installing curl software . Since Mac users have curl as part of macOS build, Windows users should make sure that their local machines build have curl installed properly.

    • -

  • Checking if you can run curl from your command prompt. Type curl --help and you should see the help pages for the curl program once everything is defined correctly.

    • +
  • +

    curl software . Since Mac users have curl as part of macOS build, Windows users should make sure that their local machines build have curl installed properly.

    +
      +
    • Checking if you can run curl from your command prompt. Type curl --help and you should see the help pages for the curl program once everything is defined correctly.
      • +
    +

  • Within Rstudio or R terminal run the following commands to install NASAaccess:

      @@ -148,7 +152,7 @@

    • -

    Within the Rstudio help tab the user can verify that the package has been installed and browse the help pages of the various functions of NASAaccess.

    +

    Within the Rstudio help tab the user can verify that the package has been installed and browse the help pages of the various functions of NASAaccess. The GES DISC user registration access logging information will be processed by masking (i.e., not displaying the lieteral typed text as input) on most but not all platforms. Without providing GES DISC user registration access logging information, the user will receive ‘You need to provide your Earthdata GES DISC login to proceed…’ message.

    @@ -156,9 +160,9 @@

    • -

      After registration with Earthdata NASAaccess software package users should create a reference file (.netrc) with Earthdata credentials stored in it to streamline the retrieval access from NASA servers.

      +

      NASAaccess conda package needs a user registration access with Earthdata. Users should set up a registration account(s) with Earthdata login as well as well as authorizing NASA GES DISC data access. Please refer to https://disc.gsfc.nasa.gov/data-access for further details.

        -
      • Creating the .netrc file at the user machine Home directory and storing the user NASA GES DISC logging information in it is needed to execute the NASAaccess package commands. Accessing data from NASA servers is further explained at Here.
        • +
      • Creating the .netrc file at the user machine Home directory and storing the user NASA GES DISC logging information in it is done automatically to execute the NASAaccess package commands. Accessing data from NASA servers is further explained at Here. The GES DISC user registration access logging information will be processed by masking in the terminal on any major OS. Without providing GES DISC user registration access logging information, the user will receive ‘You need to provide your Earthdata GES DISC login to proceed…’ message.

    • To install NASAaccess package in a conda environment run the following:

      • @@ -188,7 +192,7 @@

      #> To cite package 'NASAaccess' in publications use: #> #> Mohammed I (2023). _NASAaccess: Downloading and Reformatting Tool for -#> NASA Earth Observation Data Products_. R package version 3.3.1, +#> NASA Earth Observation Data Products_. R package version 3.4.2, #> <https://github.com/nasa/NASAaccess>. #> #> A BibTeX entry for LaTeX users is @@ -199,7 +203,7 @@

      #> year = {2023}, #> institution = {National Aeronautics and Space Administration, Goddard Space Flight Center}, #> address = {Greenbelt, Maryland}, -#> note = {R package version 3.3.1}, +#> note = {R package version 3.4.2}, #> url = {https://github.com/nasa/NASAaccess}, #> }

    diff --git a/docs/news/index.html b/docs/news/index.html index 470cacc..5fe804c 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -17,7 +17,7 @@ NASAaccess - 3.4.1 + 3.4.2 @@ -69,6 +69,10 @@

    Changelog

    Source: NEWS.md +
    +

    NASAaccess 3.4.2

    +
    • Adding getPass library in Imports. Addressing curl Certificate Verification for NEX-GDDP.
      • +

    NASAaccess 3.4.1

    • no need for _netrc file creation in windows
      • diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index d00c74b..aeb0cae 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -7,5 +7,5 @@ articles: GPM: GPM.html NEXGDDP-CMIP6: NEXGDDP-CMIP6.html NEXGDDP: NEXGDDP.html -last_built: 2023-03-21T19:49Z +last_built: 2023-04-17T14:38Z diff --git a/docs/reference/GLDASpolyCentroid.html b/docs/reference/GLDASpolyCentroid.html index eac51a1..b52ac7d 100644 --- a/docs/reference/GLDASpolyCentroid.html +++ b/docs/reference/GLDASpolyCentroid.html @@ -17,7 +17,7 @@ NASAaccess - 3.4.1 + 3.4.2
    diff --git a/docs/reference/GLDASwat.html b/docs/reference/GLDASwat.html index 151fe88..c95d8d8 100644 --- a/docs/reference/GLDASwat.html +++ b/docs/reference/GLDASwat.html @@ -17,7 +17,7 @@ NASAaccess - 3.4.1 + 3.4.2 diff --git a/docs/reference/GPM_NRT.html b/docs/reference/GPM_NRT.html index 8cc816a..305477f 100644 --- a/docs/reference/GPM_NRT.html +++ b/docs/reference/GPM_NRT.html @@ -17,7 +17,7 @@ NASAaccess - 3.4.1 + 3.4.2 diff --git a/docs/reference/GPMpolyCentroid.html b/docs/reference/GPMpolyCentroid.html index 6eb9206..7e6733a 100644 --- a/docs/reference/GPMpolyCentroid.html +++ b/docs/reference/GPMpolyCentroid.html @@ -17,7 +17,7 @@ NASAaccess - 3.4.1 + 3.4.2 diff --git a/docs/reference/GPMswat.html b/docs/reference/GPMswat.html index 71dc255..9ae54be 100644 --- a/docs/reference/GPMswat.html +++ b/docs/reference/GPMswat.html @@ -17,7 +17,7 @@ NASAaccess - 3.4.1 + 3.4.2 diff --git a/docs/reference/NEX_GDDP_CMIP5.html b/docs/reference/NEX_GDDP_CMIP5.html index 9e289a7..eb5960b 100644 --- a/docs/reference/NEX_GDDP_CMIP5.html +++ b/docs/reference/NEX_GDDP_CMIP5.html @@ -17,7 +17,7 @@ NASAaccess - 3.4.1 + 3.4.2 diff --git a/docs/reference/NEX_GDDP_CMIP6.html b/docs/reference/NEX_GDDP_CMIP6.html index 6e15e9d..a653575 100644 --- a/docs/reference/NEX_GDDP_CMIP6.html +++ b/docs/reference/NEX_GDDP_CMIP6.html @@ -17,7 +17,7 @@ NASAaccess - 3.4.1 + 3.4.2 diff --git a/docs/reference/index.html b/docs/reference/index.html index 1f825e1..2b12278 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -17,7 +17,7 @@ NASAaccess - 3.4.1 + 3.4.2