From 490967e0c5118834658f87510d8ee025fa043b87 Mon Sep 17 00:00:00 2001 From: Leandro Radusky Date: Thu, 30 Nov 2023 10:36:35 +0100 Subject: [PATCH] New version of instructions file --- public/templates/Instructions.txt | 21 ++++++++++++--------- 1 file changed, 12 insertions(+), 9 deletions(-) diff --git a/public/templates/Instructions.txt b/public/templates/Instructions.txt index a95ff8cfb..05a3a67b2 100644 --- a/public/templates/Instructions.txt +++ b/public/templates/Instructions.txt @@ -1,4 +1,4 @@ -This compressed file contains three tables containing data elements for the RADx-rad Data Hub. The tables +This compressed file contains four tables containing data elements for the RADx-rad Data Hub. The tables contain pre-filled data based on the information available to the CDx LIMS system. The tables are provided to the user to fill in the missing information. Please note that you need to maintain the same format as the one provided in the tables (CSV file format, with identical columns and rows). @@ -8,6 +8,7 @@ The three provided tables are as follows: 1. _samples.csv 2. _samples_results.csv 3. _.csv +3. _batches.csv The first table contains one row per sample with general information about each sample. @@ -15,13 +16,15 @@ The second table contains one row per sample result, providing information about each sample by the user, including the readout, measurement units, used technology, etc. The third table contains one row per panel and provides information about the aggregated results obtained -after the tests were performed. The can be either "LOD" or "Challenge" depending on the type of -test performed. +after the tests were performed. The can be either "LOD", "Challenge" or "Variants" depending on the +type of panel used. -Once the developer completes the missing data, these files are ready to be submitted to the RADx-rad -Data Core (https://www.radxrad.org/) for quality assurance. For more information, please contact -Dr. Peter Rose (pwrose.ucsd@gmail.com). The Data Core administrator will review the data for completeness -and consistency and will reach out to the developer if any issues arise. +The fourth table contains one row per batch included in the panel and provides information about these +batches: features describing the virus features as its lineage, reference gene taken into account to measure +concentration, etc. -After the data passes the quality check, the Data Core administrator uploads the data files, common data -element dictionaries, and metadata files to the NIH COVID RADx-rad Data Hub (https://radx-hub.nih.gov/). +Please reach out to Dr. Peter Rose at pwrose.ucsd@gmail.com once you have obtained the necessary files. +Dr. Rose will assist you in incorporating technology metadata, generating the dictionary file, and thoroughly +assessing your files for completeness and consistency. Upon successful completion of this review, submit the +files to the RADx-rad Data Core. For questions related to the data submission process, please contact +Pritham Ram at pritham.ram@yale.edu. \ No newline at end of file