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enrichment default should be to gene not allele #826

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ValWood opened this issue Jun 28, 2022 · 4 comments
Open

enrichment default should be to gene not allele #826

ValWood opened this issue Jun 28, 2022 · 4 comments

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@ValWood
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ValWood commented Jun 28, 2022

Should always be to genes if there is a gene column
I.e in our genes to phenotypes and alleles the enrichment is alleles by default.
Enriching n alleles would be rare and likely not useful (especially if you can enrich on genes)

(from discussion in the e-mail, I thing there was general agreement about this)

@heralden
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heralden commented Aug 3, 2022

Can you give exact instructions to reproduce? I'm not able to - it always seems to default to gene for me. Note that if you change it to allele, it will continue with allele for the rest of the session if available unless you change it to something else (your own selection will override the default).

@ValWood
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ValWood commented Aug 3, 2022

Hi @heralden

currently I am getting:
Screenshot 2022-08-03 at 16 23 51
and
Screenshot 2022-08-03 at 16 24 14

@heralden
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heralden commented Aug 8, 2022

@ValWood I rebuilt the mine and this is fixed now. Daniela will rebuild again with more recent data soon.

@ValWood
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ValWood commented Aug 18, 2022

I can't access the pombemine at the old, or new URL right now?

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