From 57a246986f480f1d92d332c0301cac9bd12691dc Mon Sep 17 00:00:00 2001 From: Benjamin De Boe Date: Thu, 2 Jan 2025 15:53:10 +0100 Subject: [PATCH] reran pkgdown reran pkgdown for Connecting.Rmd only and stuck with CSS / JS versions of other files for consistency, just to pick up fresht content. --- docs/articles/Connecting.html | 92 +++++++++++++++++++++++++++++------ 1 file changed, 77 insertions(+), 15 deletions(-) diff --git a/docs/articles/Connecting.html b/docs/articles/Connecting.html index e5169dfe..6093fee8 100644 --- a/docs/articles/Connecting.html +++ b/docs/articles/Connecting.html @@ -19,7 +19,7 @@ - +
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  • @@ -82,7 +82,7 @@
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    Connecting to a database

    Martijn J. Schuemie

    -

    2023-12-11

    +

    2025-01-02

    Source: vignettes/Connecting.Rmd @@ -120,6 +120,7 @@

    Introduction @@ -176,10 +177,11 @@

    -

    Obtaining drivers for Netezza and Impala +

    Obtaining drivers for Netezza, Impala and InterSystems IRIS

    -

    Because of licensing reasons the drivers for BigQuery, Netezza and -Impala are not included but must be obtained by the user. see these +

    Because of licensing reasons the drivers for BigQuery, Netezza, +Impala and InterSystems IRIS are not included but must be obtained by +the user. see these instructions on how to download these drivers, which you can also see by typing ?jdbcDrivers.

    @@ -267,13 +269,73 @@

    Connecting to a SQLite databaseinsertTable(connection = conn, tableName = "cars", data = cars)

    -
    ## Inserting data took 0.0271 secs
    +
    ## Inserting data took 0.0247 secs
     querySql(conn, "SELECT COUNT(*) FROM main.cars;")
    +
    ## Warning in fun(libname, pkgname): Java library version does not match R package version! Please try reinstalling the SqlRender package.
+##             Make sure to close all instances of R, and open only one instance before reinstalling. Also make sure your
+##             R workspace is not reloaded on startup. Delete your .Rdata file if necessary
    ##   COUNT(*)
 ## 1       50
    -
    +
     disconnect(conn)
    
+
    +
    +

    Connecting with Windows authentication from a non-windows +machine +

    +

    Kerberos is used by Active Directory, you need to have the +appropriate packages installed on your client machine. For MacOS, the +Kerberos packages are usually already installed. On Linux, you’ll have +to install krb5-user. Most of this setup comes from this +site.

    +
      +
    1. +

      On the non-windows client machine, create or update +/etc/krb5.conf so that it points to your AD server. Here’s +an example of krb5.conf:

      +
      [libdefaults]
+default_realm = DOMAIN.COMPANY.COM
+
+[realms]
+DOMAIN.COMPANY.COM = {
+  kdc = dc-33.domain.company.com
+}
      +
      2. +

    2. Run kinit <username>@DOMAIN.COMPANY.COM to get +a ticket granting ticket from the kerberos domain controller (KDC). +(NOTE: you want to make sure your KDC is accessible from your +machine)

      3. +

    3. Download the latest MSSql +JDBC driver.

      4. +
    4. +

      Try to connect to the database with the following code in +RStudio:

      +
      library(devtools)
+library(DatabaseConnector)
+connectionDetails <- createConnectionDetails(
+  dbms="sql server", 
+  ...
+  extraSettings="authenticationScheme=JavaKerberos")
+c <- connect(connectionDetails = connectionDetails)
      +

      In RStudio, you should see that the variable c has a value and the +new connection in the connections tab as well.

      +
      5. +
    +

    Note: If you are getting the below error on Mac:

    +
    +

    Error in rJava::.jcall(jdbcDriver, “Ljava/sql/Connection;”, +“connect”, : com.microsoft.sqlserver.jdbc.SQLServerException: Kerberos +Login failed: Integrated authentication failed. +ClientConnectionId:13fb0d4e-4822-4de2-a125-8408334cb3ed due to +javax.security.auth.login.LoginException (Cannot get any of properties: +[user, USER] from con properties not available to garner authentication +information from the user)

    +
    +

    Instead of kinit you can also try +/System/Library/CoreServices and find ‘Ticket Viewer’ Click +‘Add Identity’, then enter your user name. After you click ‘Continue’, a +Kerberos ticket should have been generated.

    @@ -281,7 +343,7 @@

    Connecting to a SQLite database

    Contents

    - + @@ -294,16 +356,16 @@

    Connecting to a SQLite database

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.1.1.

    - - + +