DESCRIPTION

Package: MADloy
Type: Package
Title: Package to detect mosaic LOY from SNP array data
Version: 1.0.7
Date: 2024-03-01
Author: Juan R Gonzalez
Maintainer: Juan R Gonzalez <juanr.gonzalez@isglobal.org>
Depends:
    data.table,
    R (>= 3.2.0),
Imports:
    BiocGenerics,
    GenomeInfoDb,
    GenomicRanges,
    graphics,
    IRanges,
    parallel,
    stats,
    utils,
    wordcloud
Description: This packages is a suit of functions to perform association analysis of
             mosaic LOY and quantitative or continuous outcomes. It uses SNP array data in pennCNV
             format (e.g. having snp_name, chromosome, position, LRR, BAF and genotype). There are             
             functions to perform quality control of samples, functions to process raw data and extract
             the LRR and BAF information of required genomic regions, and a function to perform 
             calling based on Normal Inverse Gaussian distribution that properly fits LRR data.
License: GPL (>= 2)
URL: https://github.com/isglobal-brge/MADloy and http://brge.isglobal.org
VignetteBuilder: knitr
Suggests:
    knitr,
    rmarkdown
LazyData: FALSE
Encoding: UTF-8
RoxygenNote: 7.2.3