From 023d318ca83e7d947963efd00b6cb079df28e65e Mon Sep 17 00:00:00 2001 From: istallworthy <31548151+istallworthy@users.noreply.github.com> Date: Mon, 4 Dec 2023 22:26:43 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20istallwo?= =?UTF-8?q?rthy/devMSMs@f79c57c279efd03cac984d15d235a128e3bc4cdc=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- articles/Preliminary_Steps.html | 4 +- articles/Terminology.html | 2 +- articles/Workflow_Continuous_Exposure.html | 68 +++--- .../figure-html/unnamed-chunk-17-1.png | Bin 29757 -> 29886 bytes .../figure-html/unnamed-chunk-17-2.png | Bin 30056 -> 29264 bytes .../figure-html/unnamed-chunk-22-1.png | Bin 57842 -> 58246 bytes .../figure-html/unnamed-chunk-22-10.png | Bin 78944 -> 79083 bytes .../figure-html/unnamed-chunk-22-11.png | Bin 58602 -> 59081 bytes .../figure-html/unnamed-chunk-22-12.png | Bin 78124 -> 78192 bytes 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reference/trimWeights-3.png | Bin 24895 -> 24564 bytes reference/trimWeights.html | 12 +- search.json | 2 +- 120 files changed, 324 insertions(+), 314 deletions(-) diff --git a/articles/Preliminary_Steps.html b/articles/Preliminary_Steps.html index f17240a2..79db7a8f 100644 --- a/articles/Preliminary_Steps.html +++ b/articles/Preliminary_Steps.html @@ -229,7 +229,7 @@
As shown above, createFormulas()
creates a balancing
formula for each exposure time point. Each full formula contains all
time invariant confounders as well as all lagged time-varying
@@ -598,7 +598,7 @@
Above, we inspect the shortened balancing formula at each exposure time point. These formulas are considerably shorter than the full formulas. For instance, at the 58-month exposure time point, the formula @@ -753,9 +753,9 @@
#> For imputation 2 and the bart weighting method, the median weight value is 0.69 (SD= 1.46; range= 0.03-23.52 ).
+#> For imputation 2 and the bart weighting method, the median weight value is 0.69 (SD= 1.49; range= 0.03-24.46 ).
@@ -1028,16 +1028,16 @@2c. Assess #> **Imputation 1**
#> USER ALERT: For exposure ESETA1 imputation 1 using bart and short formulas:
-#> The median absolute value relation between exposure and confounder is 0.03 (range = -0.1 - 0.2).
+#> The median absolute value relation between exposure and confounder is 0.03 (range = -0.1 - 0.21).
#>
#>
-#> As shown below, 11 out of 131 (8%) covariates across time points, corresponding to 6 out of 32 domains, remain imbalanced with a remaining median absolute value correlation/std mean difference of 0.11 (range= -0.1-0.2):
+#> As shown below, 11 out of 131 (8%) covariates across time points, corresponding to 5 out of 32 domains, remain imbalanced with a remaining median absolute value correlation/std mean difference of 0.1 (range= -0.1-0.21):
#> Table: Imbalanced Covariates for imputation 1 using bart and short formulas
#>
#> | exp_time| balanced_n| imbalanced_n| n|
#> |--------:|----------:|------------:|--:|
-#> | 6| 17| 1| 18|
-#> | 15| 25| 3| 28|
+#> | 6| 16| 2| 18|
+#> | 15| 26| 2| 28|
#> | 24| 25| 2| 27|
#> | 35| 28| 2| 30|
#> | 58| 25| 3| 28|
@@ -1046,10 +1046,10 @@ 2c. Assess
#> **Imputation 2**
#> USER ALERT: For exposure ESETA1 imputation 2 using bart and short formulas:
-#> The median absolute value relation between exposure and confounder is 0.02 (range = -0.09 - 0.23).
+#> The median absolute value relation between exposure and confounder is 0.02 (range = -0.1 - 0.22).
#>
#>
-#> As shown below, 9 out of 131 (7%) covariates across time points, corresponding to 5 out of 32 domains, remain imbalanced with a remaining median absolute value correlation/std mean difference of 0.12 (range= -0.07-0.23):
+#> As shown below, 9 out of 131 (7%) covariates across time points, corresponding to 5 out of 32 domains, remain imbalanced with a remaining median absolute value correlation/std mean difference of 0.12 (range= -0.08-0.22):
#> Table: Imbalanced Covariates for imputation 2 using bart and short formulas
#>
#> | exp_time| balanced_n| imbalanced_n| n|
@@ -1065,23 +1065,23 @@ 2c. Assess
#> *** Averaging Across All Imputations ***
#> USER ALERT: Averaging across all imputed datasets for exposure ESETA1 using the short formulas and bart :
-#> The median absolute value relation between exposure and confounder is 0.03 (range = -0.08-0.22).
+#> The median absolute value relation between exposure and confounder is 0.03 (range = -0.08-0.21).
#>
-#> As shown below, the following 9 covariates across time points out of 131 total (6.87%) spanning 4 domains out of 33 (12.12%) are imbalanced with a remaining median absolute value correlation/std mean difference in relation to ESETA1 of 0.12 (range=-0.08-0.22) :
+#> As shown below, the following 9 covariates across time points out of 131 total (6.87%) spanning 4 domains out of 33 (12.12%) are imbalanced with a remaining median absolute value correlation/std mean difference in relation to ESETA1 of 0.11 (range=-0.08-0.21) :
#>
#> Table: Imbalanced Covariates
#>
#> | |exposure | exp_time| covar_time|covariate | avg_bal| bal_thresh| balanced|
#> |:---|:--------|--------:|----------:|:--------------|----------:|----------:|--------:|
-#> |1 |ESETA1 | 6| 0|caregiv_health | 0.1200640| 0.10| 0|
-#> |22 |ESETA1 | 15| 6|ESETA1.6 | 0.2152089| 0.10| 0|
-#> |47 |ESETA1 | 24| 15|B18Raw.15 | 0.1186169| 0.10| 0|
-#> |50 |ESETA1 | 24| 15|ESETA1.15 | 0.1425375| 0.10| 0|
-#> |54 |ESETA1 | 24| 15|InRatioCor.15 | -0.0655873| 0.05| 0|
-#> |78 |ESETA1 | 35| 24|ESETA1.24 | 0.1222258| 0.10| 0|
-#> |82 |ESETA1 | 35| 24|InRatioCor.24 | -0.0821708| 0.05| 0|
-#> |106 |ESETA1 | 58| 35|ESETA1.35 | 0.1150633| 0.10| 0|
-#> |110 |ESETA1 | 58| 35|InRatioCor.35 | -0.0593496| 0.05| 0|
+#> |1 |ESETA1 | 6| 0|caregiv_health | 0.1133218| 0.10| 0|
+#> |22 |ESETA1 | 15| 6|ESETA1.6 | 0.2146223| 0.10| 0|
+#> |47 |ESETA1 | 24| 15|B18Raw.15 | 0.1167899| 0.10| 0|
+#> |50 |ESETA1 | 24| 15|ESETA1.15 | 0.1333365| 0.10| 0|
+#> |54 |ESETA1 | 24| 15|InRatioCor.15 | -0.0719585| 0.05| 0|
+#> |78 |ESETA1 | 35| 24|ESETA1.24 | 0.1221565| 0.10| 0|
+#> |82 |ESETA1 | 35| 24|InRatioCor.24 | -0.0808052| 0.05| 0|
+#> |106 |ESETA1 | 58| 35|ESETA1.35 | 0.1109730| 0.10| 0|
+#> |110 |ESETA1 | 58| 35|InRatioCor.35 | -0.0634108| 0.05| 0|
For the BART weighting method, the median absolute value correlation between exposure and confounder is 0.02, with 11 confounders remaining imbalanced.
@@ -1326,7 +1326,7 @@As shown above, several imbalanced confounders at lags greater than
t-1 were added to the short formulas at exposure time points
35-58. For instance, at the 35-month time point, economic strain at 6
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