pyproject.toml

[build-system]
requires = ["setuptools>=61.2"]
build-backend = "setuptools.build_meta"

[project]
name = "genin2"
authors = [
    {name = "Alessandro Sartori", email = "asartori@izsvenezie.it"},
    {name = "Edoardo Giussani", email = "egiussani@izsvenezie.it"},
]
description = "Genin2 is a lightining-fast bioinformatic tool to predict genotypes for H5 viruses belonging to the European clade 2.3.4.4b"
keywords = ["avian-influenza", "genotype-inspector", "genotype-predictor"]
license = {text = "AGPLv3+"}
dynamic = ["version"]
requires-python = ">=3.9"
classifiers = [
    "Programming Language :: Python :: 3",
    "Operating System :: OS Independent",
    "Environment :: Console",
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)"
]
dependencies = [
    "biopython == 1.85",
    "click == 8.1.8",
    "importlib-resources == 6.5.2",
    "numpy == 2.2.2",
    "joblib == 1.4.2",
    "scikit-learn == 1.6.1",
    "requests == 2.32.3"
]

[project.readme]
file = "README.md"
content-type = "text/markdown"

[project.urls]
"Homepage" = "https://github.com/izsvenezie-virology/genin2"
"Bug Tracker" = "https://github.com/izsvenezie-virology/genin2/issues"

[project.scripts]
genin2 = "genin2.cli:start_cli"

[tool.setuptools]
package-dir = {"" = "src"}
include-package-data = true

[tool.setuptools.packages.find]
where = ["src"]
namespaces = true

[tool.setuptools.package-data]
genin2 = ["models.xz", "compositions.tsv"]

[tool.setuptools.dynamic]
version = {attr = "genin2.genin2_core.__version__"}