Reference class Fasta parsing is really inefficient and error-prone

[mdshw5]

You might consider just using something like this: https://github.com/mdshw5/pyfaidx. If you are planning to keep developing this project I'd be glad to help clean this part up.

Disclaimer: I am the author of pyfaidx.

[AlSimonsJax]

Hi, Matt.

Thanks for the pointer to your project. I was unaware of it. I do plan another release toward the end of the summer, and will replace my code for accessing reference sequence with yours. Thanks.

At this point, I think I'm all set with staffing, but may come back to you.
Thanks,
-Al

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From: Matt Shirley [[email protected]]
Sent: Tuesday, June 24, 2014 2:50 PM
To: jaxcs/Seqnature
Subject: [Seqnature] Reference class Fasta parsing is really inefficient and error-prone (#1)

You might consider just using something like this: https://github.com/mdshw5/pyfaidx. If you are planning to keep developing this project I'd be glad to help clean this part up.

Disclaimer: I am the author of pyfaidx.

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[mdshw5]

Cool.

On Jul 8, 2014, at 1:01 PM, Al Simons [email protected] wrote:

Hi, Matt.

Thanks for the pointer to your project. I was unaware of it. I do plan another release toward the end of the summer, and will replace my code for accessing reference sequence with yours. Thanks.

At this point, I think I'm all set with staffing, but may come back to you.
Thanks,
-Al

---

From: Matt Shirley [[email protected]]
Sent: Tuesday, June 24, 2014 2:50 PM
To: jaxcs/Seqnature
Subject: [Seqnature] Reference class Fasta parsing is really inefficient and error-prone (#1)

You might consider just using something like this: https://github.com/mdshw5/pyfaidx. If you are planning to keep developing this project I'd be glad to help clean this part up.

Disclaimer: I am the author of pyfaidx.

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/1.

The information in this email, including attachments, may be confidential and is intended solely for the addressee(s). If you believe you received this email by mistake, please notify the sender by return email as soon as possible.
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Reply to this email directly or view it on GitHub.