.gitignore

.*
!.git*
_*
*.out

docs/*
!docs/*.html

results/*

!results/librarytiterbarcodecounts
results/librarytiterbarcodecounts/*.png
results/librarytiterbarcodecounts/counts
results/librarytiterbarcodecounts/fates
results/librarytiterbarcodecounts/invalid_counts

!results/barcode_counts
results/barcode_counts/*
!results/barcode_counts/*.csv

!results/plates
results/plates/*/*
!results/plates/*/frac_infectivity.csv
!results/plates/*/curvefits.csv
!results/plates/*/qc_drops.yml

!results/sera
results/sera/*/*
!results/sera/groups_sera_by_plate.csv
!results/sera/*/titers_DRIVE.csv
!results/sera/*/titers_per_replicate.csv
!results/sera/*/qc_drops.yml

!results/aggregated_titers
results/aggregated_titers/*
!results/aggregated_titers/titers_DRIVE.csv

!results/qc_drops
results/qc_drops/*
!results/qc_drops/plate_qc_drops.yml
!results/qc_drops/groups_sera_qc_drops.yml