How do handle read1 and read2 of unmapped fq

[Cynthia1012]

I have now used bismark to get unmaped read1(_1.fq.gz) and read2(_2.fq.gz)。But when I use epiTEome -un can't input read1 fq and read2 fq at the same time, what do you have to solve this?
Thanks !

[jdaron]

Hi Cynthia1012,

Thanks for your interest in the epiTEome program.

For instance epiTEome does not works with paired-end reads. It only take single end read. So I will recommend to concatenate your read 1fq and read2 fq file and to give it as input of epiTEome.

Best,
Josquin