From 52a4ce0cd90f6dd7dd9e489936232e2088221c9a Mon Sep 17 00:00:00 2001 From: Giulio Ermanno Pibiri Date: Thu, 23 Nov 2023 15:10:31 +0100 Subject: [PATCH] table with bits/kmer in benchmarks/README --- benchmarks/README.md | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/benchmarks/README.md b/benchmarks/README.md index 368bb8c..e9de7ff 100644 --- a/benchmarks/README.md +++ b/benchmarks/README.md @@ -26,4 +26,12 @@ The query times are relative to the following configuration: - Processor: Intel i9-9900K @ 3.60 GHz; - Compiler: gcc 11.2.0; -- OS: GNU/Linux 5.13.0-52-generic x86_64. \ No newline at end of file +- OS: GNU/Linux 5.13.0-52-generic x86_64. + +### Space in bits/kmer + +| Dictionary |elegans ||| cod ||| kesterl ||| human ||| +|:------------------|:------:|:------:|:------:|:------:|:------:|:------:|:------:|:------:|:------:|:-----:|:-------:|:-----:| +| | k=31 | k=47 | k=63 | k=31 | k=47 | k=63 | k=31 | k=47 | k=63 | k=31 | k=47 | k=63 | +| SSHash, **regular** | 5.86 | 4.29 | 3.51 | 7.84 | 5.17 | 4.26 | 7.53 | 4.67 | 3.76 | 8.70 | 5.65 | 4.64 | +| SSHash, **canonical** | 6.70 | 4.85 | 3.93 | 8.80 | 5.81 | 4.83 | 8.51 | 5.32 | 4.24 | 9.80 | 6.51 | 5.33 | \ No newline at end of file