diff --git a/README.md b/README.md index c51a30c..f4c2328 100644 --- a/README.md +++ b/README.md @@ -216,26 +216,11 @@ Below a comparison between the dictionary built in Example 2 (not canonical) and the one just built (Example 3, canonical). ./sshash query -i salmonella_100.index -q ../data/queries/SRR5833294.10K.fastq.gz - index size: 10.3981 [MB] (6.36232 [bits/kmer]) - ==== query report: - num_kmers = 460000 - num_positive_kmers = 46 (0.01%) - num_searches = 42/46 (91.3043%) - num_extensions = 4/46 (8.69565%) - elapsed = 229.159 millisec / 0.229159 sec / 0.00381932 min / 498.172 ns/kmer ./sshash query -i salmonella_100.canon.index -q ../data/queries/SRR5833294.10K.fastq.gz - index size: 11.0657 [MB] (6.77083 [bits/kmer]) - ==== query report: - num_kmers = 460000 - num_positive_kmers = 46 (0.01%) - num_searches = 42/46 (91.3043%) - num_extensions = 4/46 (8.69565%) - elapsed = 107.911 millisec / 0.107911 sec / 0.00179852 min / 234.589 ns/kmer - -We see that the canonical dictionary is twice as fast as the regular dictionary -for low-hit workloads, -even on this tiny example, for only +0.4 bits/k-mer. + +The canonical dictionary can be twice as fast as the regular dictionary +for low-hit workloads, even on this tiny example, for only +0.4 bits/k-mer. ### Example 4