NAMESPACE

# Generated by roxygen2: do not edit by hand

export(FindAllMarkers.bygroup)
export(ProjecTILs.classifier)
export(Run.ProjecTILs)
export(cellstate.predict)
export(celltype.heatmap)
export(compute_silhouette)
export(find.discriminant.dimensions)
export(find.discriminant.genes)
export(load.reference.map)
export(make.projection)
export(make.reference)
export(merge.Seurat.embeddings)
export(plot.discriminant.3d)
export(plot.projection)
export(plot.statepred.composition)
export(plot.states.radar)
export(read.sc.query)
export(recalculate.embeddings)
import(RColorBrewer)
import(Seurat)
import(ggplot2)
import(pheatmap)
importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,bplapply)
importFrom(Matrix,readMM)
importFrom(STACAS,FindAnchors.STACAS)
importFrom(STACAS,IntegrateData.STACAS)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,select)
importFrom(dplyr,top_n)
importFrom(grDevices,rainbow)
importFrom(patchwork,plot_annotation)
importFrom(patchwork,wrap_plots)
importFrom(pracma,distmat)
importFrom(reshape2,melt)
importFrom(scales,alpha)
importFrom(scales,hue_pal)
importFrom(stats,aggregate)
importFrom(stats,ks.test)
importFrom(stats,prcomp)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,t.test)
importFrom(tidyr,drop_na)
importFrom(uwot,umap)