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storing.m
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function [store] = storing(res, subjects)
for iPosition = 1:2
switch iPosition
case 1
mymed = 115.4;
case 2
mymed = 108.6;
end
% peaks info
store(iPosition).sum = 0;
store(iPosition).negative = 0;
store(iPosition).positive = 0;
store(iPosition).rrInt = []; % RRI
store(iPosition).rrIntC = []; % RRI within cycle
store(iPosition).Sp = []; % SBP
store(iPosition).SpC = []; % SBP within cycle
store(iPosition).Dp = []; % DBP
% sequence info
store(iPosition).nUp = zeros(21,1);
store(iPosition).nDn = zeros(21,1);
store(iPosition).errorUp = []; % Error of estimate, up seq
store(iPosition).errorDn = []; % Error of estimate, dn seq
store(iPosition).errorSumUp = []; % Summed error of estimate, up seq
store(iPosition).errorSumDn = []; % Summed error of estimate, dn seq
store(iPosition).errorUp_wo = []; % Error of estimate, up seq, wo beat 1
store(iPosition).errorDn_wo = []; % Error of estimate, dn seq, wo beat 1
store(iPosition).SlopeUp = []; % BRS, up seq, lag 0
store(iPosition).SlopeDn = []; % BRS, dn seq, lag 0
store(iPosition).SlopeUp_wo = []; % BRS, up seq, wo beat 1, lag 0
store(iPosition).SlopeDn_wo = []; % BRS, dn seq, wo beat 1, lag 0
store(iPosition).SlopeAll = []; % BRS, all seq, lag 0
store(iPosition).ellipseSlopeUp = []; % BRS, up seq, ellipse
store(iPosition).ellipseSlopeDn = []; % BRS, dn seq, ellipse
store(iPosition).ellipseSlopeAll = []; % BRS, all seq, ellipse
% cycle info
store(iPosition).ellipseSlopeAllC = []; % BRS, all seq, ellipse
store(iPosition).errorUpC = []; % Error of estimate, up seq within cycle
store(iPosition).errorDnC = []; % Error of estimate, dn seq within cycle
store(iPosition).errorSumUpC = []; % Summed error of estimate, up seq within cycle
store(iPosition).errorSumDnC = []; % Summed error of estimate, up seq within cycle
store(iPosition).SlopeAllC = []; % BRS, up seq within cycle, lag 0
store(iPosition).SlopeUpC = []; % BRS, up seq within cycle, lag 0
store(iPosition).SlopeDnC = []; % BRS, dn seq within cycle, lag 0
store(iPosition).RegSlope = []; % BRS, reg, cycle, lag 0
store(iPosition).EllipseSlope = []; % BRS, ellipse, cycle, lag 0
store(iPosition).RegL = []; % Major axis, reg, cycle, lag 0
store(iPosition).Regl = []; % Minor axis, reg, cycle, lag 0
store(iPosition).EllipseL = []; % Major axis, ellipse, cycle, lag 0
store(iPosition).EllipseL_e = []; % Major axis correct, ellipse, cycle, lag 0
store(iPosition).Ellipsel = []; % Minor axis, ellipse, cycle, lag 0
store(iPosition).nCycles = zeros(21, 1); % # cycles, lag 0
store(iPosition).ellipseArea = []; % Area, ellipse, cycle, lag 0
store(iPosition).area = []; % Area, polygon, cycle, lag 0
store(iPosition).ProjAngle = []; % Projection angle into circle of ellipse, cycle, lag 0
store(iPosition).magnitudeH = []; % Hysteresis magnitude, ellipse, cycle, lag 0
store(iPosition).Centroids = []; % position of center of mass
store(iPosition).deltaBRS = []; % difference in BRS from up seq to dn seq, ellipse method
store(iPosition).setpoint = []; % difference in setpoint from up seq to dn seq, ellipse method
store(iPosition).dist_ps = [];
store(iPosition).dist_setpoint = [];
% frequency domain
store(iPosition).psd_alphaLF = []; % alphaLF
store(iPosition).psd_alphaHF = []; %alphaHF
store(iPosition).psd_LF = []; %LF, HRV spectrum
store(iPosition).psd_HF = []; %HF, HRV spectrum
store(iPosition).psd_csLF = []; %LF, cross spectrum
store(iPosition).psd_csHF = []; %HF, cross spectrum
store(iPosition).psd_nLF = []; %normalized LF, HRV spectrum
store(iPosition).psd_nHF = []; %normalized HF, HRV spectrum
store(iPosition).psd_fdRatio = []; %ratio of normalized LF/HF, HRV spectrum
store(iPosition).psd_power = []; %power over all range of freq, HRV spectrum
store(iPosition).coherence = [];
store(iPosition).fft_alphaLF = []; % alphaLF
store(iPosition).fft_alphaHF = []; %alphaHF
store(iPosition).fft_LF = []; %LF, HRV spectrum
store(iPosition).fft_HF = []; %HF, HRV spectrum
store(iPosition).fft_csLF = []; %LF, cross spectrum
store(iPosition).fft_csHF = []; %HF, cross spectrum
store(iPosition).fft_nLF = []; %normalized LF, HRV spectrum
store(iPosition).fft_nHF = []; %normalized HF, HRV spectrum
store(iPosition).fft_fdRatio = []; %ratio of normalized LF/HF, HRV spectrum
store(iPosition).fft_power = []; %power over all range of freq, HRV spectrum
% lag analysis
store(iPosition).nLag = zeros(21, 3); % # sequences of each lag for each subject
store(iPosition).lag2 = []; % BRS, all seq, lag 2
store(iPosition).lag1 = []; % BRS, all seq, lag 1
store(iPosition).ellipseSlope_lag1 = []; % BRS, all seq, lag 1
% beat analysis
store(iPosition).allBeats = zeros(1, 21); % # beats for each subject
store(iPosition).SPVUp = [];
store(iPosition).SPVDn = [];
store(iPosition).HRVUp = [];
store(iPosition).HRVDn = [];
store(iPosition).SPVUp_norm = [];
store(iPosition).SPVDn_norm = [];
store(iPosition).HRVUp_norm = [];
store(iPosition).HRVDn_norm = [];
store(iPosition).beatSpDn = []; % beat to beat SPV, dn seq, lag 0
store(iPosition).beatSpUp = []; % beat to beat SPV, up seq, lag 0
store(iPosition).beatRRDn = []; % beat to beat HRV, dn seq, lag 0
store(iPosition).beatRRUp = []; % beat to beat HRV, up seq, lag 0
store(iPosition).beatSpDn_norm = []; % beat to beat SPV, dn seq, lag 0
store(iPosition).beatSpUp_norm = []; % beat to beat SPV, up seq, lag 0
store(iPosition).beatRRDn_norm = []; % beat to beat HRV, dn seq, lag 0
store(iPosition).beatRRUp_norm = []; % beat to beat HRV, up seq, lag 0
store(iPosition).beatSpDnC = []; % beat to beat SPV, dn seq, lag 0
store(iPosition).beatSpUpC = []; % beat to beat SPV, up seq, lag 0
store(iPosition).beatRRDnC = []; % beat to beat HRV, dn seq within cycle, lag 0
store(iPosition).beatRRUpC = []; % beat to beat HRV, up seq within cycle, lag 0
store(iPosition).beatSpDnC_norm = []; % beat to beat SPV, dn seq, lag 0
store(iPosition).beatSpUpC_norm = []; % beat to beat SPV, up seq, lag 0
store(iPosition).beatRRDnC_norm = []; % beat to beat HRV, dn seq within cycle, lag 0
store(iPosition).beatRRUpC_norm = []; % beat to beat HRV, up seq within cycle, lag 0
store(iPosition).beatSpUp_lag1 = []; % beat to beat SPV, up seq, lag 1
store(iPosition).beatSpDn_lag1 = []; % beat to beat SPV, dn seq, lag 1
store(iPosition).beatRRUp_lag1 = []; % beat to beat HRV, up seq, lag 1
store(iPosition).beatRRDn_lag1 = []; % beat to beat HRV, up seq, lag 1
store(iPosition).beatRRUp_lag1_norm = []; % beat to beat HRV, up seq, lag 1
store(iPosition).beatRRDn_lag1_norm = []; % beat to beat HRV, up seq, lag 1
% ellipse method for sequences
store(iPosition).UpSeqEllipseL = [];
store(iPosition).UpSeqEllipsel = [];
store(iPosition).DnSeqEllipseL = [];
store(iPosition).DnSeqEllipsel = [];
store(iPosition).UpG = [];
store(iPosition).DnG = [];
store(iPosition).ellipseSlopeDnC = [];
store(iPosition).ellipseSlopeUpC = [];
for i = 1:length(subjects)
iSubject = subjects(i);
store(iPosition).uniqueUpSeqC = [];
store(iPosition).uniqueDnSeqC = [];
% peaks
store(iPosition).rrInt = [store(iPosition).rrInt; res(iPosition).AB(iSubject).rrInt];
store(iPosition).Sp = [store(iPosition).Sp; res(iPosition).AB(iSubject).Sp];
store(iPosition).Dp = [store(iPosition).Dp; -res(iPosition).AB(iSubject).Dp];
% frequency domain
% store(iPosition).psd_LF = [store(iPosition).psd_LF; res(iPosition).BRS(iSubject).psd.HrvLf];
% store(iPosition).psd_HF = [store(iPosition).psd_HF; res(iPosition).BRS(iSubject).psd.HrvHf];
% store(iPosition).psd_nLF = [store(iPosition).psd_nLF; res(iPosition).BRS(iSubject).psd.HrvLf_nu];
% store(iPosition).psd_nHF = [store(iPosition).psd_nHF; res(iPosition).BRS(iSubject).psd.HrvHf_nu];
% store(iPosition).psd_fdRatio = [store(iPosition).psd_fdRatio; res(iPosition).BRS(iSubject).psd.HrvSv];
% store(iPosition).psd_power = [store(iPosition).psd_power; res(iPosition).BRS(iSubject).psd.total_power];
% store(iPosition).fft_alphaLF = [store(iPosition).fft_alphaLF; res(iPosition).BRS(iSubject).fft.alphaLf];
% store(iPosition).fft_alphaHF = [store(iPosition).fft_alphaHF; res(iPosition).BRS(iSubject).fft.alphaHf];
% store(iPosition).fft_LF = [store(iPosition).fft_LF; res(iPosition).BRS(iSubject).fft.HrvLf];
% store(iPosition).fft_HF = [store(iPosition).fft_HF; res(iPosition).BRS(iSubject).fft.HrvHf];
% %store(iPosition).fft_csLF = [store(iPosition).fft_csLF; res(iPosition).BRS(iSubject).fft.CsLf];
% %store(iPosition).fft_csHF = [store(iPosition).fft_csHF; res(iPosition).BRS(iSubject).fft.CsHf];
% store(iPosition).fft_nLF = [store(iPosition).fft_nLF; res(iPosition).BRS(iSubject).fft.HrvLf_nu];
% store(iPosition).fft_nHF = [store(iPosition).fft_nHF; res(iPosition).BRS(iSubject).fft.HrvHf_nu];
% store(iPosition).fft_fdRatio = [store(iPosition).fft_fdRatio; res(iPosition).BRS(iSubject).fft.HrvSv];
% store(iPosition).fft_power = [store(iPosition).fft_power; res(iPosition).BRS(iSubject).fft.total_power];
% store(iPosition).psd_alphaLF = [store(iPosition).psd_alphaLF; res(iPosition).BRS(iSubject).psd.alphaLf];
% store(iPosition).psd_alphaHF = [store(iPosition).psd_alphaHF; res(iPosition).BRS(iSubject).psd.alphaHf];
%
% if res(iPosition).BRS(iSubject).FreqDomain.cohereHf >= 0.5
% store(iPosition).psd_csHF = [store(iPosition).psd_csHF; res(iPosition).BRS(iSubject).psd.CsHf];
% end
% % if res(iPosition).BRS(iSubject).FreqDomain.cohereLf >= 0.5
% store(iPosition).psd_csLF = [store(iPosition).psd_csLF; res(iPosition).BRS(iSubject).psd.CsLf];
% store(iPosition).coherence = [store(iPosition).coherence; res(iPosition).BRS(iSubject).psd.cohereLf];
% % end
% sequence info
for iSequence = 1:length(res(iPosition).BRS(iSubject).UpSeq)
if res(iPosition).BRS(iSubject).UpSeq(iSequence).error > 0.85
store(iPosition).nUp(iSubject, 1) = store(iPosition).nUp(iSubject, 1) + 1;
%regression
store(iPosition).errorUp = [store(iPosition).errorUp; res(iPosition).BRS(iSubject).UpSeq(iSequence).dist];
store(iPosition).errorUp_wo = [store(iPosition).errorUp_wo; res(iPosition).BRS(iSubject).UpSeq(iSequence).dist_wo];
store(iPosition).errorSumUp = [store(iPosition).errorSumUp; sum(res(iPosition).BRS(iSubject).UpSeq(iSequence).dist_wo)];
store(iPosition).SlopeUp = [store(iPosition).SlopeUp; res(iPosition).BRS(iSubject).UpSeq(iSequence).avg];
store(iPosition).SlopeUp_wo = [store(iPosition).SlopeUp_wo; res(iPosition).BRS(iSubject).UpSeq(iSequence).avg_wo];
% ellipse method for sequences
if ~isempty( res(iPosition).BRS(iSubject).UpSeq(iSequence).ellipse )
store(iPosition).ellipseSlopeUp = [store(iPosition).ellipseSlopeUp; tand(res(iPosition).BRS(iSubject).UpSeq(iSequence).ellipse.Orientation)];
store(iPosition).ellipseSlopeAll = [store(iPosition).ellipseSlopeAll; tand(res(iPosition).BRS(iSubject).UpSeq(iSequence).ellipse.Orientation)];
store(iPosition).SlopeAll = [store(iPosition).SlopeAll; res(iPosition).BRS(iSubject).UpSeq(iSequence).avg];
end
store(iPosition).nLag(iSubject, 1) = store(iPosition).nLag(iSubject, 1) + 1;
% beat analysis
tempLagRRUp = NaN(1, 3);
tempLagSpUp = NaN(1, 3);
tempLagRRUp_norm = NaN(1, 3);
tempLagSpUp_norm = NaN(1, 3);
iLag = 1;
diffSpUp = diff(res(iPosition).BRS(iSubject).UpSeq(iSequence).Sp) ;
diffSpUp_norm = diff(res(iPosition).BRS(iSubject).UpSeq(iSequence).Sp) ./ res(iPosition).BRS(iSubject).UpSeq(iSequence).Sp(1:end-1);
diffRRUp = diff(res(iPosition).BRS(iSubject).UpSeq(iSequence).rr) ;
diffRRUp_norm = diff(res(iPosition).BRS(iSubject).UpSeq(iSequence).rr) ./ res(iPosition).BRS(iSubject).UpSeq(iSequence).rr(1:end-1);
while ( iLag <= length( res(iPosition).BRS(iSubject).UpSeq(iSequence).beat ) ) && ( iLag < 4 )
tempLagSpUp(1, iLag) = diffSpUp(iLag);
tempLagRRUp(1, iLag) = diffRRUp(iLag);
tempLagSpUp_norm(1, iLag) = diffSpUp_norm(iLag);
tempLagRRUp_norm(1, iLag) = diffRRUp_norm(iLag);
iLag = iLag + 1;
end
store(iPosition).beatSpUp = [store(iPosition).beatSpUp; tempLagSpUp];
store(iPosition).beatRRUp = [store(iPosition).beatRRUp; tempLagRRUp];
store(iPosition).beatSpUp_norm = [store(iPosition).beatSpUp_norm; tempLagSpUp_norm];
store(iPosition).beatRRUp_norm = [store(iPosition).beatRRUp_norm; tempLagRRUp_norm];
end
end
for iSequence = 1:length(res(iPosition).BRS(iSubject).DnSeq)
if res(iPosition).BRS(iSubject).DnSeq(iSequence).error > 0.85
store(iPosition).nDn(iSubject, 1) = store(iPosition).nDn(iSubject, 1) + 1;
%regression
store(iPosition).errorDn = [store(iPosition).errorDn; res(iPosition).BRS(iSubject).DnSeq(iSequence).dist];
store(iPosition).errorDn_wo = [store(iPosition).errorDn_wo; res(iPosition).BRS(iSubject).DnSeq(iSequence).dist_wo];
store(iPosition).errorSumDn = [store(iPosition).errorSumDn; sum(res(iPosition).BRS(iSubject).DnSeq(iSequence).dist_wo)];
store(iPosition).SlopeDn = [store(iPosition).SlopeDn; res(iPosition).BRS(iSubject).DnSeq(iSequence).avg];
store(iPosition).SlopeDn_wo = [store(iPosition).SlopeDn_wo; res(iPosition).BRS(iSubject).DnSeq(iSequence).avg_wo];
store(iPosition).nLag(iSubject, 1) = store(iPosition).nLag(iSubject, 1) + 1;
% ellipse method for sequences
if ~isempty( res(iPosition).BRS(iSubject).DnSeq(iSequence).ellipse )
store(iPosition).ellipseSlopeDn = [store(iPosition).ellipseSlopeDn; tand(res(iPosition).BRS(iSubject).DnSeq(iSequence).ellipse.Orientation)];
store(iPosition).ellipseSlopeAll = [store(iPosition).ellipseSlopeAll; tand(res(iPosition).BRS(iSubject).DnSeq(iSequence).ellipse.Orientation)];
store(iPosition).SlopeAll = [store(iPosition).SlopeAll; res(iPosition).BRS(iSubject).DnSeq(iSequence).avg];
end
% beat analysis
iLag = 1;
tempLagSpDn = NaN(1, 3);
tempLagRRDn = NaN(1, 3);
tempLagSpDn_norm = NaN(1, 3);
tempLagRRDn_norm = NaN(1, 3);
diffSpDn_norm = diff(res(iPosition).BRS(iSubject).DnSeq(iSequence).Sp) ./ res(iPosition).BRS(iSubject).DnSeq(iSequence).Sp(1:end-1);
diffRRDn_norm = diff(res(iPosition).BRS(iSubject).DnSeq(iSequence).rr) ./ res(iPosition).BRS(iSubject).DnSeq(iSequence).rr(1:end-1);
diffSpDn = diff(res(iPosition).BRS(iSubject).DnSeq(iSequence).Sp);
diffRRDn = diff(res(iPosition).BRS(iSubject).DnSeq(iSequence).rr);
while ( iLag <= length( res(iPosition).BRS(iSubject).DnSeq(iSequence).beat ) ) && ( iLag < 4 )
tempLagSpDn(1, iLag) = diffSpDn(iLag);
tempLagRRDn(1, iLag) = diffRRDn(iLag);
tempLagSpDn_norm(1, iLag) = diffSpDn_norm(iLag);
tempLagRRDn_norm(1, iLag) = diffRRDn_norm(iLag);
iLag = iLag + 1;
end
store(iPosition).beatSpDn = [store(iPosition).beatSpDn; tempLagSpDn];
store(iPosition).beatRRDn = [store(iPosition).beatRRDn; tempLagRRDn];
store(iPosition).beatSpDn_norm = [store(iPosition).beatSpDn_norm; tempLagSpDn_norm];
store(iPosition).beatRRDn_norm = [store(iPosition).beatRRDn_norm; tempLagRRDn_norm];
end
end
% cycle information
store(iPosition).nCycles(iSubject) = length( res(iPosition).BRS(iSubject).BrsCycle );
for iBRSCycle = 1:length(res(iPosition).BRS(iSubject).BrsCycle)
% if ~isempty(res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse) && tand(res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.Orientation) <= 35
%regression method
store(iPosition).RegSlope = [store(iPosition).RegSlope; res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).reg.Slope];
store(iPosition).RegL = [store(iPosition).RegL; res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).reg.MjrAxisLength];
store(iPosition).Regl = [store(iPosition).Regl; res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).reg.MnrAxisLength];
iUp = res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).UpSeq;
iDn = res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).DnSeq;
if ~ismember( iUp, store(iPosition).uniqueUpSeqC )
store(iPosition).uniqueUpSeqC = [store(iPosition).uniqueUpSeqC; iUp];
% brs, reg
store(iPosition).SlopeUpC = [store(iPosition).SlopeUpC; res(iPosition).BRS(iSubject).UpSeq(iUp).avg];
% ellipse for sequences
if ~isempty( res(iPosition).BRS(iSubject).UpSeq(iUp).ellipse )
% brs, ellipse
store(iPosition).ellipseSlopeUpC = [store(iPosition).ellipseSlopeUpC; tand(res(iPosition).BRS(iSubject).UpSeq(iUp).ellipse.Orientation)];
store(iPosition).UpSeqEllipseL = [store(iPosition).UpSeqEllipseL; 2*res(iPosition).BRS(iSubject).UpSeq(iUp).ellipse.MjrSemiAxis];
store(iPosition).UpSeqEllipsel = [store(iPosition).UpSeqEllipsel; 2*res(iPosition).BRS(iSubject).UpSeq(iUp).ellipse.MnrSemiAxis];
store(iPosition).SlopeAllC = [store(iPosition).SlopeAllC; res(iPosition).BRS(iSubject).UpSeq(iUp).avg];
store(iPosition).ellipseSlopeAllC = [store(iPosition).ellipseSlopeAllC; tand(res(iPosition).BRS(iSubject).UpSeq(iUp).ellipse.Orientation)];
end
% beat to beat
temp = abs(diff(res(iPosition).BRS(iSubject).UpSeq(iUp).rr))';
store(iPosition).HRVUp = [store(iPosition).HRVUp; res(iPosition).BRS(iSubject).UpSeq(iUp).rr(end)-res(iPosition).BRS(iSubject).UpSeq(iUp).rr(1)];
store(iPosition).HRVUp_norm = [store(iPosition).HRVUp_norm; ( res(iPosition).BRS(iSubject).UpSeq(iUp).rr(end)-res(iPosition).BRS(iSubject).UpSeq(iUp).rr(1) )/res(iPosition).BRS(iSubject).UpSeq(iUp).rr(1)];
if length(temp) > 2
store(iPosition).beatRRUpC = [store(iPosition).beatRRUpC; temp(1:3)]; % beat to beat HRV, dn seq within cycle, lag 0
store(iPosition).beatRRUpC_norm = [store(iPosition).beatRRUpC_norm; temp(1:3)./res(iPosition).BRS(iSubject).UpSeq(iUp).rr(1:3)'];
else
store(iPosition).beatRRUpC_norm = [store(iPosition).beatRRUpC_norm; [temp(1:2)./res(iPosition).BRS(iSubject).UpSeq(iUp).rr(1:2)' NaN] ];
store(iPosition).beatRRUpC = [store(iPosition).beatRRUpC; [temp(1:2) NaN] ];
end
temp = abs(diff(res(iPosition).BRS(iSubject).UpSeq(iUp).Sp))';
store(iPosition).SPVUp = [store(iPosition).SPVUp; res(iPosition).BRS(iSubject).UpSeq(iUp).Sp(end)-res(iPosition).BRS(iSubject).UpSeq(iUp).Sp(1)];
store(iPosition).SPVUp_norm = [store(iPosition).SPVUp_norm; (res(iPosition).BRS(iSubject).UpSeq(iUp).Sp(end)-res(iPosition).BRS(iSubject).UpSeq(iUp).Sp(1))/res(iPosition).BRS(iSubject).UpSeq(iUp).Sp(1)];
if length(temp) > 2
store(iPosition).beatSpUpC = [store(iPosition).beatSpUpC; temp(1:3)]; % beat to beat HRV, dn seq within cycle, lag 0
store(iPosition).beatSpUpC_norm = [store(iPosition).beatSpUpC_norm; temp(1:3)./res(iPosition).BRS(iSubject).UpSeq(iUp).Sp(1:3)'];
else
store(iPosition).beatSpUpC = [store(iPosition).beatSpUpC; [temp(1:2) NaN] ];
store(iPosition).beatSpUpC_norm = [store(iPosition).beatSpUpC_norm; [temp(1:2)./res(iPosition).BRS(iSubject).UpSeq(iUp).Sp(1:2)' NaN] ];
end
end
if ~isempty( res(iPosition).BRS(iSubject).DnSeq(iDn).ellipse )
% magnitude H
G = (res(iPosition).BRS(iSubject).DnSeq(iDn).ellipse.MnrSemiAxis*2)/res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.MnrSemiAxis;
store(iPosition).DnG = [store(iPosition).DnG; G];
if G > 1
store(iPosition).sum = store(iPosition).sum + 1;
end
end
if ~isempty( res(iPosition).BRS(iSubject).UpSeq(iUp).ellipse )
%magnitude H
G = (res(iPosition).BRS(iSubject).UpSeq(iUp).ellipse.MnrSemiAxis*2)/res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.MnrSemiAxis;
store(iPosition).UpG = [store(iPosition).UpG; G];
if G > 1
store(iPosition).sum = store(iPosition).sum + 1;
end
end
if ~ismember( iDn, store(iPosition).uniqueDnSeqC )
store(iPosition).uniqueDnSeqC = [store(iPosition).uniqueDnSeqC; iDn];
% brs, regression
store(iPosition).SlopeDnC = [store(iPosition).SlopeDnC; res(iPosition).BRS(iSubject).DnSeq(iDn).avg];
%
% % ellipse of sequence
if ~isempty( res(iPosition).BRS(iSubject).DnSeq(iDn).ellipse )
% brs, ellipse
store(iPosition).ellipseSlopeDnC = [store(iPosition).ellipseSlopeDnC; tand(res(iPosition).BRS(iSubject).DnSeq(iDn).ellipse.Orientation)];
store(iPosition).DnSeqEllipseL = [store(iPosition).DnSeqEllipseL; 2*res(iPosition).BRS(iSubject).DnSeq(iDn).ellipse.MjrSemiAxis];
store(iPosition).DnSeqEllipsel = [store(iPosition).DnSeqEllipsel; 2*res(iPosition).BRS(iSubject).DnSeq(iDn).ellipse.MnrSemiAxis];
store(iPosition).ellipseSlopeAllC = [store(iPosition).ellipseSlopeAllC; tand(res(iPosition).BRS(iSubject).DnSeq(iDn).ellipse.Orientation)];
store(iPosition).SlopeAllC = [store(iPosition).SlopeAllC; res(iPosition).BRS(iSubject).DnSeq(iDn).avg];
end
% beat to beat
temp = abs(diff(res(iPosition).BRS(iSubject).DnSeq(iDn).Sp))';
store(iPosition).SPVDn = [store(iPosition).SPVDn; res(iPosition).BRS(iSubject).DnSeq(iDn).Sp(end)-res(iPosition).BRS(iSubject).DnSeq(iDn).Sp(1)];
store(iPosition).SPVDn_norm = [store(iPosition).SPVDn_norm; ( res(iPosition).BRS(iSubject).DnSeq(iDn).Sp(end)-res(iPosition).BRS(iSubject).DnSeq(iDn).Sp(1) )/res(iPosition).BRS(iSubject).DnSeq(iDn).Sp(1)];
if length(temp) > 2
store(iPosition).beatSpDnC = [store(iPosition).beatSpDnC; temp(1:3)]; % beat to beat HRV, dn seq within cycle, lag 0
store(iPosition).beatSpDnC_norm = [store(iPosition).beatSpDnC_norm; temp(1:3)./res(iPosition).BRS(iSubject).DnSeq(iDn).Sp(1:3)']; % beat to beat HRV, dn seq within cycle, lag 0
else
store(iPosition).beatSpDnC = [store(iPosition).beatSpDnC; [temp(1:2) NaN] ];
store(iPosition).beatSpDnC_norm = [store(iPosition).beatSpDnC_norm; [temp(1:2)./res(iPosition).BRS(iSubject).DnSeq(iDn).Sp(1:2)' NaN] ];
end
temp = abs(diff(res(iPosition).BRS(iSubject).DnSeq(iDn).rr))';
store(iPosition).HRVDn = [store(iPosition).HRVDn; res(iPosition).BRS(iSubject).DnSeq(iDn).rr(end)-res(iPosition).BRS(iSubject).DnSeq(iDn).rr(1)];
store(iPosition).HRVDn_norm = [store(iPosition).HRVDn_norm; ( res(iPosition).BRS(iSubject).DnSeq(iDn).rr(end)-res(iPosition).BRS(iSubject).DnSeq(iDn).rr(1) )/res(iPosition).BRS(iSubject).DnSeq(iDn).rr(1)];
if length(temp) > 2
store(iPosition).beatRRDnC = [store(iPosition).beatRRDnC; temp(1:3)]; % beat to beat HRV, dn seq within cycle, lag 0
store(iPosition).beatRRDnC_norm = [store(iPosition).beatRRDnC_norm; temp(1:3)./res(iPosition).BRS(iSubject).DnSeq(iDn).rr(1:3)'];
else
store(iPosition).beatRRDnC = [store(iPosition).beatRRDnC; [temp(1:2) NaN] ];
store(iPosition).beatRRDnC_norm = [store(iPosition).beatRRDnC_norm; [temp(1:2)./res(iPosition).BRS(iSubject).DnSeq(iDn).rr(1:2)' NaN] ];
end
end
store(iPosition).errorUpC = [store(iPosition).errorUpC; res(iPosition).BRS(iSubject).UpSeq(iUp).dist_wo];
store(iPosition).errorSumUpC = [store(iPosition).errorSumUpC; sum(res(iPosition).BRS(iSubject).UpSeq(iUp).dist_wo)];
store(iPosition).errorSumDnC = [store(iPosition).errorSumDnC; sum(res(iPosition).BRS(iSubject).DnSeq(iDn).dist_wo)];
store(iPosition).errorDnC = [store(iPosition).errorDnC; res(iPosition).BRS(iSubject).DnSeq(iDn).dist_wo];
store(iPosition).SpC = [store(iPosition).SpC; res(iPosition).BRS(iSubject).UpSeq(iUp).Sp];
store(iPosition).SpC = [store(iPosition).SpC; res(iPosition).BRS(iSubject).DnSeq(iDn).Sp];
store(iPosition).rrIntC = [store(iPosition).rrIntC; res(iPosition).BRS(iSubject).UpSeq(iUp).rr];
store(iPosition).rrIntC = [store(iPosition).rrIntC; res(iPosition).BRS(iSubject).DnSeq(iDn).rr];
%ellipse method
if ~isempty( res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse )
store(iPosition).EllipseL = [store(iPosition).EllipseL; 2*res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.MjrSemiAxis ];
store(iPosition).Ellipsel = [store(iPosition).Ellipsel; 2*res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.MnrSemiAxis ];
store(iPosition).EllipseSlope = [store(iPosition).EllipseSlope; res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.BRS ];
Maxis = res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.MjrSemiAxis;
maxis = res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.MnrSemiAxis;
ratio = maxis/Maxis;
store(iPosition).magnitudeH = [store(iPosition).magnitudeH; ratio];
store(iPosition).ProjAngle = [store(iPosition).ProjAngle; acosd(ratio)]; % orientation angle of plane
area = pi * maxis * Maxis;
store(iPosition).ellipseArea = [store(iPosition).ellipseArea; area];
store(iPosition).area = [store(iPosition).area; res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).area];
store(iPosition).Centroids = [store(iPosition).Centroids; res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.Cntrd];
store(iPosition).deltaBRS = [store(iPosition).deltaBRS; res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).deltaBRS];
store(iPosition).setpoint = [store(iPosition).setpoint; res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.setpoint];
if res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.setpoint < 0
store(iPosition).negative = store(iPosition).negative + 1;
else
store(iPosition).positive = store(iPosition).positive + 1;
end
%new_setpoint = res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.dist_ps - median (res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.dist_ps) + mymed;
%store(iPosition).dist_ps = [store(iPosition).dist_ps; res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.dist_ps'];
%store(iPosition).dist_setpoint = [store(iPosition).dist_setpoint; res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.dist_setpoint'];
end
% else
% plot(res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).pgonAll); hold on;
% plot(res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.Ellipse(1,:) + res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.Cntrd(1), res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.Ellipse(2,:) + res(iPosition).BRS(iSubject).BrsCycle(iBRSCycle).ellipse.Cntrd(2)); hold on;
% end
end
% Lag analysis
for iSeq = 1:length( res(iPosition).BRS(iSubject).lag1_Up )
if ~isempty ( res(iPosition).BRS(iSubject).lag1_Up(iSeq).ellipse )
store(iPosition).ellipseSlope_lag1 = [store(iPosition).ellipseSlope_lag1; tand( res(iPosition).BRS(iSubject).lag1_Up(iSeq).ellipse.Orientation ) ];
end
if res(iPosition).BRS(iSubject).lag1_Up(iSeq).error > 0.85
store(iPosition).lag1 = [store(iPosition).lag1; res(iPosition).BRS(iSubject).lag1_Up(iSeq).avg];
% storing # of sequences
store(iPosition).nLag(iSubject, 2) = store(iPosition).nLag(iSubject, 2) + 1;
% beat analysis
iLag = 1;
tempLagSpUp = NaN(1, 3);
tempLagRRUp = NaN(1, 3);
tempLagRRUp_norm = NaN(1, 3);
diffSpUp = diff(res(iPosition).BRS(iSubject).lag1_Up(iSeq).Sp);
diffRRUp_norm = diff(res(iPosition).BRS(iSubject).lag1_Up(iSeq).rr) ./ res(iPosition).BRS(iSubject).lag1_Up(iSeq).rr(1:end-1);
diffRRUp = diff(res(iPosition).BRS(iSubject).lag1_Up(iSeq).rr) ;
while ( iLag <= length( res(iPosition).BRS(iSubject).lag1_Up(iSeq).beat ) ) && ( iLag < 4 )
tempLagSpUp(1, iLag) = diffSpUp(iLag);
tempLagRRUp(1, iLag) = diffRRUp(iLag);
tempLagRRUp_norm(1, iLag) = diffRRUp_norm(iLag);
iLag = iLag + 1;
end
store(iPosition).beatSpUp_lag1 = [store(iPosition).beatSpUp_lag1; tempLagSpUp];
store(iPosition).beatRRUp_lag1 = [store(iPosition).beatRRUp_lag1; tempLagRRUp];
store(iPosition).beatRRUp_lag1_norm = [store(iPosition).beatRRUp_lag1_norm; tempLagRRUp_norm];
end
end
for iSeq = 1:length( res(iPosition).BRS(iSubject).lag1_Dn )
if ~isempty ( res(iPosition).BRS(iSubject).lag1_Dn(iSeq).ellipse)
store(iPosition).ellipseSlope_lag1 = [store(iPosition).ellipseSlope_lag1; tand( res(iPosition).BRS(iSubject).lag1_Dn(iSeq).ellipse.Orientation ) ];
end
if res(iPosition).BRS(iSubject).lag1_Dn(iSeq).error > 0.85
store(iPosition).lag1 = [store(iPosition).lag1; res(iPosition).BRS(iSubject).lag1_Dn(iSeq).avg];
store(iPosition).nLag(iSubject, 2) = store(iPosition).nLag(iSubject, 2) + 1;
% beat analysis
iLag = 1;
tempLagSpDn = NaN(1, 3);
tempLagRRDn = NaN(1, 3);
tempLagRRDn_norm = NaN(1, 3);
diffSpDn = diff(res(iPosition).BRS(iSubject).lag1_Dn(iSeq).Sp);
diffRRDn_norm = diff(res(iPosition).BRS(iSubject).lag1_Dn(iSeq).rr) ./ res(iPosition).BRS(iSubject).lag1_Dn(iSeq).rr(1:end-1);
diffRRDn = diff(res(iPosition).BRS(iSubject).lag1_Dn(iSeq).rr) ;
while ( iLag <= length( res(iPosition).BRS(iSubject).lag1_Dn(iSeq).beat ) ) && ( iLag < 4 )
tempLagSpDn(1, iLag) = diffSpDn(iLag);
tempLagRRDn(1, iLag) = diffRRDn(iLag);
tempLagRRDn_norm(1, iLag) = diffRRDn_norm(iLag);
iLag = iLag + 1;
end
store(iPosition).beatSpDn_lag1 = [store(iPosition).beatSpDn_lag1; tempLagSpDn];
store(iPosition).beatRRDn_lag1 = [store(iPosition).beatRRDn_lag1; tempLagRRDn];
store(iPosition).beatRRDn_lag1_norm = [store(iPosition).beatRRDn_lag1_norm; tempLagRRDn_norm];
end
end
% for iSeq = 1:length( res(iPosition).BRS(iSubject).lag2_Up )
% if res(iPosition).BRS(iSubject).lag2_Up(iSeq).error > 0.85
% store(iPosition).lag2 = [store(iPosition).lag2; res(iPosition).BRS(iSubject).lag2_Up(iSeq).avg];
% store(iPosition).nLag(iSubject, 3) = store(iPosition).nLag(iSubject, 3) + 1;
% end
% end
% for iSeq = 1:length( res(iPosition).BRS(iSubject).lag2_Dn )
% if res(iPosition).BRS(iSubject).lag2_Dn(iSeq).error > 0.85
% store(iPosition).lag2 = [store(iPosition).lag2; res(iPosition).BRS(iSubject).lag2_Dn(iSeq).avg_wo];
% store(iPosition).nLag(iSubject, 3) = store(iPosition).nLag(iSubject, 3) + 1;
% end
% end
% normalization of % sequence for 512 beats
store(iPosition).allBeats(1, iSubject) = length( res(iPosition).AB(iSubject).Rp );
store(iPosition).nLag(iSubject, :) = ( (store(iPosition).nLag(iSubject, :) ./ store(iPosition).allBeats(1, iSubject) ) ) .* 512;
end
store(iPosition).SlopeUp = rmoutliers(store(iPosition).SlopeUp);
store(iPosition).SlopeDn= rmoutliers(store(iPosition).SlopeDn);
store(iPosition).SlopeUpC = rmoutliers(store(iPosition).SlopeUpC);
store(iPosition).SlopeDnC = rmoutliers(store(iPosition).SlopeDnC);
store(iPosition).ellipseSlopeUp = rmoutliers(store(iPosition).ellipseSlopeUp);
store(iPosition).ellipseSlopeDn = rmoutliers(store(iPosition).ellipseSlopeDn);
store(iPosition).ellipseSlopeUpC = rmoutliers(store(iPosition).ellipseSlopeUpC);
store(iPosition).ellipseSlopeDnC = rmoutliers(store(iPosition).ellipseSlopeDnC);
% store(iPosition).EllipseSlope = store(iPosition).EllipseSlope/10;
% store(iPosition).EllipseSlope = rmoutliers(store(iPosition).EllipseSlope);
end
%normalization of length of axes for regression and ellipse method
%normalization factor is the biggest median of all axes
normL = max ([median(store(1).RegL), median(store(2).RegL), median(store(1).EllipseL), median(store(2).EllipseL)]);
store(1).RegL_norm = store(1).RegL ./ normL;
store(2).RegL_norm = store(2).RegL ./ normL;
store(1).EllipseL_norm = store(1).EllipseL ./ normL;
store(2).EllipseL_norm = store(2).EllipseL ./ normL;
store(1).Regl_norm = store(1).Regl ./ normL;
store(2).Regl_norm = store(2).Regl ./ normL;
store(1).Ellipsel_norm = store(1).Ellipsel ./ normL;
store(2).Ellipsel_norm = store(2).Ellipsel ./ normL;
end