Plotting of the cell_sorting example

[Armavica]

Hi, as part of the review of your software/article that I am doing for JOSS (openjournals/joss-reviews#7723), I tried to run the first example myself.

I was eventually able to generate the video, but I had to adapt the file cellular_raza-examples/cell_sorting/generate_movie.sh that refers to a file plot.py which I believe should actually be src/plot.py?

[jonaspleyer]

Thanks for reviewing cellular_raza. I hope that you saw the link to the hompage https://cellular-raza.com/ at which I give more details and explanations with in-depth guides on how to construct a first simulation from scratch.

You are referring to the file cellular_raza-examples/cell_sorting/generate_movie.sh which points to plot.py which itself was moved to src/plot.py. I will correct the path to src/plot.py and add an additional README.md to clear things up.

[jonaspleyer]

Update: See commits: 0b55a91 2cdf63d in which I addressed the points from above.

Please let me know if you want to be listed as co-author for the changes made. I will be happy to include you but also fine with either choice.

Edit: Use new commit hashes.

[Armavica]

Sounds good! Yes, I was indeed referring to this file. I did see the showcase on the website, but as this example is also provided in the repository that's how I tried to run it: it is what felt the most convenient to me on the moment. Either way is fine as long as it works!
Please don't include me on the changes, I am just reporting issues :)

[jonaspleyer]

Please don't include me on the changes, I am just reporting issues :)

Noted and removed from previous commits. 👍

[jonaspleyer]

Closing this issue now.