.bash_aliases

# One-liner for connecting to work VPN
# Secrets are stored in a separate file, then that file is loaded via .bashrc
alias vpn='echo -n "$OPENCONNECT_PASS" | sudo openconnect "$OPENCONNECT_URL" -u "$OPENCONNECT_USER" --authgroup "$OPENCONNECT_GROUP" --passwd-on-stdin --reconnect-timeout 20'

# Make mounting and accessing duke easier
duke() {
    sudo mkdir --parents "/mnt/duke/$1"
    sudo mount -t cifs "//duke.neuro.polymtl.ca/$1" "/mnt/duke/$1" -o username=$GRAMES_USER,password="$GRAMES_PASS",noexec
    cd "/mnt/duke/$1"
}

# Make accessing the Gitea interface easier
alias gitea='xdg-open http://localhost:3000 && ssh -N -L 3000:localhost:3000 $GRAMES_USER@data -v'

# No longer functioning after migration to Gitea.
# Check https://github.com/neuropoly/computers/issues/683 for progress.
# datasets() {
#     git clone "root@data.neuro.polymtl.ca:datasets/$1" "$HOME/repos/annex/$1" && cd "$HOME/repos/annex/$1"
# }
# data() {
#     ssh git@data.neuro.polymtl.ca "$1"
# }

# Clean up local and remote branches that have been deleted on GitHub
# Source: https://stackoverflow.com/questions/7726949/remove-tracking-branches-no-longer-on-remote#comment91928557_38404202
# $'' syntax: https://stackoverflow.com/a/55528377
# 'gcm' -> 'git checkout master'
alias gcm=$'git checkout master && git pull && git remote prune origin && git branch -vv | grep \': gone]\'|  grep -v "\*" | awk \'{ print $1; }\' | xargs -r git branch -D'

# Save some time switching to the sct's installation directory, since I do this a lot
alias sct='cd $SCT_DIR'

# Override the default `ls` command with preferred options
alias ls='ls -lhFv --group-directories-first --color=auto'
alias lsa='ls -lhFva --group-directories-first --color=auto'

# ensure test data is redownloaded when running sct_testing
alias sct_testing='sct_download_data -d sct_testing_data && sct_testing'

# this is a "middle ground" between install_sct and pip install --upgrade
alias piplup='pip freeze --exclude-editable | xargs pip uninstall -y && pip install -r requirements.txt'