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KNOWNISSUES.txt
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If you find any issues that should be on this list, please let me know:
IMPORTANT: SUPPORT FOR SPM5 IS DODGY. RECOMMEND USING SPM8 for all analyses.
To override the use of JP_DEFAULTS to set default values, users can
set S.cfg.options.defsfunction to any matlab function. Currently this
will only work when initializing a study using JP_INIT; running
functions without using JP_INIT/JP_RUN will still use JP_DEFAULTS. Can
work around by creating a copy of JP_DEFAULTS in Matlab path that gets
called before the built-in defaults (test by typing 'which
jp_defaults' from the command line).
4d file support doesn't work yet...when it does, for 4d NIfti files, max number of volumes is 5000 (hard coded into jp_getfunimages).
Still not confident realignunwarp is working well.
Tested on linux; most things would probably work on Windows, but some will probably fail (those requiring system commands to make softlinks or move/copy files).