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methylation_plots.R error #11

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athulmenon opened this issue Jun 16, 2016 · 1 comment
Open

methylation_plots.R error #11

athulmenon opened this issue Jun 16, 2016 · 1 comment

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@athulmenon
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methylation_plots.R make_emissions_figure panelA_file panelB1_file panelB2_file panelC1_file panelC2_file

While running methylation plot i am getting following error:

Loading required package: ggplot2 Loading required package: stringr Loading required package: data.table Read 101508979 rows and 7 (of 7) columns from 3.824 GB file in 00:01:47 Error in file(file, "rt") : cannot open the connection Calls: make_emissions_figure -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file 'NA': No such file or directory Execution halted
@jts
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jts commented Jun 16, 2016

Can you show the first 10 lines of each input file?

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@jts @athulmenon