diff --git a/workflow/rules/defaults.smk b/workflow/rules/defaults.smk index f335aa4..2a3b7de 100644 --- a/workflow/rules/defaults.smk +++ b/workflow/rules/defaults.smk @@ -42,6 +42,10 @@ def get_primer_offset(wildcards): def get_primer_bed_type_opt(wildcards): return config.get("bed_type", "unique_amplicons") +# get the primer name prefix from the config.yaml file +def get_primer_prefix(wildcards): + return config.get("primer_prefix", "nCoV-2019") + def get_snp_tree_flag(wildcards=None): return config.get("build_snp_tree", True)