Tools to set up an AMI for bioinformatics in Caltech's Parker lab
In order to get the machine set up, I ran the following steps:
- Create an ec2 instance of the following type: Ubuntu Server 18.04 LTS (HVM), SSD Volume Type - ami-0bbe6b35405ecebdb
- ssh to the instance
- run
git clone https://github.com/julianmwagner/parker_lab_ami/ - run
bash ~/parker_lab_ami/setup_ami.sh(this will take a while as it downloads and installs quite a few packages) - run
rm -f miniconda.sh - run
rm -rf ~/parker_lab_ami/ - launch the R console by typing
R - run the commands one at a time in the R console from the file
~/parker_lab_ami/r_installs.txt - you will likely need to exit and connect to the instance again to see all the changes to the .bashrc file take effect