From 3171274078a024e3e00098f709ebcd96ed1d2300 Mon Sep 17 00:00:00 2001 From: Ronald Kam Date: Thu, 8 Aug 2024 12:14:11 -0700 Subject: [PATCH 1/8] Add pytest-split as a dependency For test parallelization --- pyproject.toml | 1 + 1 file changed, 1 insertion(+) diff --git a/pyproject.toml b/pyproject.toml index b19d1292..8e07548e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -53,6 +53,7 @@ docs = [ test = [ "pytest >=7.2.0", "pytest-cov >=4.0.0", + "pytest-split>=0.9.0" "scikit-learn >=1.1.2", "h5py >=3.10.0", "coverage", From 9149f86df72bd50481302e013bef6a8f6fe58a5b Mon Sep 17 00:00:00 2001 From: Ronald Kam Date: Thu, 8 Aug 2024 12:14:43 -0700 Subject: [PATCH 2/8] Specify 8 splits for pytest-split in Github tests --- .github/workflows/test.yml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index b93313a5..a0549303 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -23,6 +23,8 @@ jobs: matrix: python_version: ['3.9', '3.11'] + split: [1, 2, 3, 4, 5, 6, 7, 8] + steps: - uses: actions/checkout@v4 - name: Set up Python ${{ matrix.python_version }} From 4c61b516be9804c518f86b4b20d6bf03f2fab248 Mon Sep 17 00:00:00 2001 From: Ronald Kam Date: Thu, 8 Aug 2024 12:18:38 -0700 Subject: [PATCH 3/8] Fix syntax in pyproject.toml --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 8e07548e..6b84985c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -53,7 +53,7 @@ docs = [ test = [ "pytest >=7.2.0", "pytest-cov >=4.0.0", - "pytest-split>=0.9.0" + "pytest-split>=0.9.0", "scikit-learn >=1.1.2", "h5py >=3.10.0", "coverage", From 6daffe9ef7d31a2eb70ec0412d2cef0809b5c068 Mon Sep 17 00:00:00 2001 From: Ronald Kam Date: Thu, 8 Aug 2024 16:27:32 -0700 Subject: [PATCH 4/8] Create .test_durations for using pytest-split Documents the time to complete each test --- tests/.test_durations | 2881 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"test_utils/test_setmany.py::test_set_many": 0.19268729991745204 +} \ No newline at end of file From 07a35fc2ce75e1609c1331826b74d278f99514dc Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Thu, 8 Aug 2024 23:28:02 +0000 Subject: [PATCH 5/8] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- tests/.test_durations | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/.test_durations b/tests/.test_durations index 65228e65..1fc6df51 100644 --- a/tests/.test_durations +++ b/tests/.test_durations @@ -2878,4 +2878,4 @@ "test_utils/test_math_utils.py::test_yield_hermite_normal_forms[9]": 0.005933400010690093, "test_utils/test_numthreads.py::test_openmp_numthreads": 0.00859609991312027, "test_utils/test_setmany.py::test_set_many": 0.19268729991745204 -} \ No newline at end of file +} From fd0677f1ae1cb4c436860815dc2e7b776bbe68cb Mon Sep 17 00:00:00 2001 From: Ronald Kam Date: Thu, 8 Aug 2024 16:40:19 -0700 Subject: [PATCH 6/8] Update test.yml with pytest-split commands --- .github/workflows/test.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index a0549303..44218adb 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -55,7 +55,7 @@ jobs: - name: Test with pytest run: | - pytest tests --cov=smol --cov-report=xml + pytest --splits 8 --group ${{ matrix.split }} --durations-path tests/.test_durations tests - if: ${{ matrix.python_version == '3.11' && github.event_name == 'push' }} name: codacy-coverage-reporter From 1c24cdba48d5626a031da711e6652987b8231297 Mon Sep 17 00:00:00 2001 From: Ronald Kam Date: Fri, 9 Aug 2024 16:36:32 -0700 Subject: [PATCH 7/8] Update test.yml Remove "max-parallel" and put split as a key within matrix --- .github/workflows/test.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 44218adb..a8ee3795 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -19,11 +19,11 @@ jobs: # Only 20.04 is known to work with scip 8.0.0 runs-on: ubuntu-20.04 strategy: - max-parallel: 10 + #max-parallel: 10 matrix: python_version: ['3.9', '3.11'] - split: [1, 2, 3, 4, 5, 6, 7, 8] + split: [1, 2, 3, 4, 5, 6, 7, 8] steps: - uses: actions/checkout@v4 From 3ef711b0c3b3e8e33843efb6c3001db40cfae61a Mon Sep 17 00:00:00 2001 From: Ronald Kam Date: Tue, 13 Aug 2024 22:13:50 -0700 Subject: [PATCH 8/8] Reformat test.yml Trying to get it to run properly on Github actions --- .github/workflows/test.yml | 11 +++++++---- 1 file changed, 7 insertions(+), 4 deletions(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index a8ee3795..a90a77c0 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -21,16 +21,19 @@ jobs: strategy: #max-parallel: 10 matrix: - python_version: ['3.9', '3.11'] + config: + - python: "3.9" + - python: "3.10" + - python: "3.11" split: [1, 2, 3, 4, 5, 6, 7, 8] steps: - uses: actions/checkout@v4 - - name: Set up Python ${{ matrix.python_version }} + - name: Set up Python ${{ matrix.config.python }} uses: actions/setup-python@v5 with: - python-version: ${{ matrix.python_version }} + python-version: ${{ matrix.config.python }} - name: Install dependencies run: | @@ -57,7 +60,7 @@ jobs: run: | pytest --splits 8 --group ${{ matrix.split }} --durations-path tests/.test_durations tests - - if: ${{ matrix.python_version == '3.11' && github.event_name == 'push' }} + - if: ${{ matrix.config.python == '3.11' && github.event_name == 'push' }} name: codacy-coverage-reporter uses: codacy/codacy-coverage-reporter-action@v1 with: