diff --git a/CITATION.bib b/CITATION.bib new file mode 100644 index 00000000..6525b8df --- /dev/null +++ b/CITATION.bib @@ -0,0 +1,12 @@ +@article {Lun2022.03.02.482701, + author = {Lun, Aaron and Kancherla, Jayaram}, + title = {Single-cell data analysis in the browser}, + elocation-id = {2022.03.02.482701}, + year = {2022}, + doi = {10.1101/2022.03.02.482701}, + publisher = {Cold Spring Harbor Laboratory}, + abstract = {We present kana, a web application for interactive single-cell RNA-seq (scRNA-seq) data analysis in the browser. Like, literally, in the browser: kana leverages web technologies such as WebAssembly to efficiently perform the relevant computations on the user{\textquoteright}s machine, avoiding the need to provision and maintain a backend service. The application provides a streamlined one-click workflow for all steps in a typical scRNA-seq analysis, starting from a count matrix and finishing with marker detection. Results are presented in an intuitive web interface for further exploration and iterative analysis. Testing on public datasets shows that kana can analyze over 100,000 cells within 5 minutes on a typical laptop.Competing Interest StatementThe authors have declared no competing interest.}, + URL = {https://www.biorxiv.org/content/early/2022/03/04/2022.03.02.482701}, + eprint = {https://www.biorxiv.org/content/early/2022/03/04/2022.03.02.482701.full.pdf}, + journal = {bioRxiv} +} diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 00000000..f0806b3c --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,40 @@ +# This CITATION.cff file was generated with cffinit. +# Visit https://bit.ly/cffinit to generate yours today! + +cff-version: 1.2.0 +title: Single-cell data analysis in the browser +message: >- + If you use this software, please cite it as below. +url: "https://github.com/jkanche/kana" +doi: "10.1101/2022.03.02.482701" +authors: + - given-names: Aaron + name-particle: Lun + email: infinite.monkeys.with.keyboards@gmail.com + affiliation: Genentech + orcid: 'https://orcid.org/0000-0002-3564-4813' + - given-names: Jayaram + name-particle: Kancherla + email: jayaram.kancherla@gmail.com + affiliation: Genentech + orcid: 'https://orcid.org/0000-0001-5855-5031' +preferred-citation: + type: article + authors: + - given-names: Aaron + name-particle: Lun + email: infinite.monkeys.with.keyboards@gmail.com + affiliation: Genentech + orcid: 'https://orcid.org/0000-0002-3564-4813' + - given-names: Jayaram + name-particle: Kancherla + email: jayaram.kancherla@gmail.com + affiliation: Genentech + orcid: 'https://orcid.org/0000-0001-5855-5031' + doi: "10.1101/2022.03.02.482701" + journal: "bioRxiv" + publisher: "Cold Spring Harbor Laboratory" + title: "Single-cell data analysis in the browser" + URL: "https://www.biorxiv.org/content/early/2022/03/04/2022.03.02.482701" + eprint: "https://www.biorxiv.org/content/early/2022/03/04/2022.03.02.482701.full.pdf" + year: 2022 \ No newline at end of file diff --git a/README.md b/README.md index 21c2fe99..80efc982 100644 --- a/README.md +++ b/README.md @@ -4,6 +4,8 @@ ## Overview +[Checkout our preprint on bioRxiv](https://www.biorxiv.org/content/10.1101/2022.03.02.482701v1) + **kana** is a web application for single-cell RNA-seq data analysis that works directly in the browser. That's right - the calculations are performed client-side, by your browser, on your computer! This differs from the usual paradigm of, e.g., Shiny applications where data needs to be sent to a backend server that does the actual analysis.