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RELEASE_NOTES.md

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Hipmer release notes

=========================================

2.3.0

  • reactivated App
  • updated slurm submit specs for Perlmutter (from Cori)
  • added an authorized user list which can exceed the input size limit of 500 Gbp

2.2.4

  • hide App

2.2.3

  • remove deprecated ContigSet output type
  • tidy up App Docs

2.2.2

  • use release AssemblyUtil

2.2.1

  • updated icon
  • added arg to limit input size by Gbp

2.2.0

  • added mer size defaults of 21,33,55,77,99
  • added scaff mer sizes with default of 99,33

2.1.0

  • Update to MetaHipMer v2.1.0.1-357
  • dropping the 127 kmer arg
  • use PrgEnv-cray/6.0.10
  • use upcxx/2022.3.0

2.0.0

  • Update to MetaHipMer v2.0.2a

1.2.1

  • Split out metagenome and plant assembly into separate apps

1.2.0

  • Switch to new HPC model for execution
  • Update to 1.2.2-7

1.1.1

  • Made input mandatory

1.1.0

  • Added parameter to filter short length contigs from assembly

1.0.7

  • Update to 1.2.1.48
  • Support for new runner

1.0.6

  • Removed single-end from allowed types

0.1.0

  • Update to new SDK and Python3
  • Add debug option