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I run sailfish (lastest version) with this command for index phase:
./sailfish index -t ../../index/transcripts.fasta -o ./ -k 31
and get this error
Version Info: This is the most recent version of Sailfish
writing log to ./logs/sailfish_index.log
RapMap Indexer
PARSE ERROR: Argument: -k (--klen)
Couldn't read argument value from string 'RapMap Indexer'
Brief USAGE:
foo [-n] [-k <positive integer less than 32>] -i <path> -t <path> [--]
[--version] [-h]
For complete USAGE and HELP type:
foo --help
The text was updated successfully, but these errors were encountered:
I run sailfish (lastest version) with this command for index phase:
./sailfish index -t ../../index/transcripts.fasta -o ./ -k 31
and get this error
The text was updated successfully, but these errors were encountered: