From 7fda9af8d3c1590736f993ef448492306343d336 Mon Sep 17 00:00:00 2001 From: briank Date: Thu, 14 Jul 2022 15:36:32 -0700 Subject: [PATCH] edited cran-comments --- cran-comments.md | 85 +++++++++--------------------------------------- 1 file changed, 16 insertions(+), 69 deletions(-) diff --git a/cran-comments.md b/cran-comments.md index 161cc42..fbee8f7 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -6,33 +6,28 @@ This package, vcfR, is generating WARNings on debian/fedora with clang. I believ ## Test environments * local: -ubuntu 22.04 LTS and R 4.2.1 -ubuntu 22.04 LTS and R Under development (unstable) (2022-07-07 r82559) +ubuntu 22.04 LTS and R 4.2.1 clang++-14 +ubuntu 22.04 LTS and R Under development (unstable) (2022-07-07 r82559) clang++-14 -Wall * local: -OS X Catalina 10.15.6 and R 4.0.2 and clang +OS X Monterey version 12.4 and R 4.2.1 and clang 13.1.6 -win-builder: -* using R version 4.0.2 (2020-06-22) -* using R Under development (unstable) (2020-08-23 r79071) +* GitHub Actions +MacOS-latest (release) - macOS 11.6.7 20G630 (R-4.2.1) +Ubuntu-latest (devel) - Ubuntu 20.04.4 LTS (unstable 2022-07-13 r82587) +Ubuntu-latest (oldrel-1) - Ubuntu 20.04.4 LTS (r-4.1.3) +Ubuntu-latest (release) - Ubuntu 20.04.4 LTS (R-4.2.1) +Windows-latest (release) - Microsoft Windows Server 2022 10.0.20348 (R-4.2.1) -travis-ci: -* Ubuntu 16.04.6 LTS, R version 4.0.0 (2020-04-24) -* Ubuntu 16.04.6 LTS, R Under development (unstable) (2020-08-26 r79084) +* AppVeyor: +Windows Server 2012 R2 x64 (build 9600), R Under development (unstable) (2020-08-24 r79088) +Windows Server 2012 R2 x64 (build 9600), R version 4.0.2 (2020-06-22) -Currently failing: -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/home/travis/R/Library/ape/libs/ape.so': - libRlapack.so: cannot open shared object file: No such file or directory +* win-builder: +None for this submission -My interpretation is that this is not due to vcfR. - -AppVeyor: -* Windows Server 2012 R2 x64 (build 9600), R Under development (unstable) (2020-08-24 r79088) -* Windows Server 2012 R2 x64 (build 9600), R version 4.0.2 (2020-06-22) - -rhub: -* None for this submission +* rhub: +None for this submission ## R CMD check results @@ -46,54 +41,6 @@ rhub: - - - - -# Delete checks below. - - -Package was archived on CRAN - -Possibly mis-spelled words in DESCRIPTION: - DNAbin (9:46) - VCF (2:33, 3:68, 4:62, 5:5, 8:30, 10:5) - VcfR (9:55) - genlight (9:36) - -These words and acronyms are esoteric to working with genomic data and are all correctly spelled. - -Found the following (possibly) invalid URLs: - URL: https://uswest.ensembl.org/info/docs/tools/vep/index.html - From: man/vep.Rd - Status: Error - Message: libcurl error code 60: - SSL certificate problem: unable to get local issuer certificate - (Status without verification: OK) - URL: https://www.internationalgenome.org/node/101 - From: inst/doc/intro_to_vcfR.html - Status: Error - Message: libcurl error code 60: - SSL certificate problem: unable to get local issuer certificate - (Status without verification: OK) - -These URLs all work when pasted into firefox. - - -* checking installed package size ... NOTE - installed size is 10.4Mb - sub-directories of 1Mb or more: - libs 8.5Mb - -This has not been an issue in the past. - - -* checking for future file timestamps ... NOTE -unable to verify current time - -I interpret this as not an issue with vcfR. - - ## Thank you CRAN Core Team! [CRAN Repository Policy](https://cran.r-project.org/web/packages/policies.html) states that all correspondence should be with CRAN and not members of the team.