From f7336b87b07d2ee79ed68379f744bf1ace59ab16 Mon Sep 17 00:00:00 2001 From: briank Date: Thu, 14 Jul 2022 19:47:55 -0700 Subject: [PATCH] added and ran revdep, no problems --- .Rbuildignore | 1 + cran-comments.md | 11 +- revdep/.gitignore | 7 + revdep/README.md | 70 +++++++ revdep/cran.md | 7 + revdep/email.yml | 5 + revdep/failures.md | 462 +++++++++++++++++++++++++++++++++++++++++++++ revdep/problems.md | 1 + 8 files changed, 561 insertions(+), 3 deletions(-) create mode 100644 revdep/.gitignore create mode 100644 revdep/README.md create mode 100644 revdep/cran.md create mode 100644 revdep/email.yml create mode 100644 revdep/failures.md create mode 100644 revdep/problems.md diff --git a/.Rbuildignore b/.Rbuildignore index 68cca46..ecdf8b4 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -8,3 +8,4 @@ cran-comments.md NEWS.md ^appveyor\.yml$ ^\.github$ +^revdep$ diff --git a/cran-comments.md b/cran-comments.md index fbee8f7..50bca2b 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -20,8 +20,8 @@ Ubuntu-latest (release) - Ubuntu 20.04.4 LTS (R-4.2.1) Windows-latest (release) - Microsoft Windows Server 2022 10.0.20348 (R-4.2.1) * AppVeyor: -Windows Server 2012 R2 x64 (build 9600), R Under development (unstable) (2020-08-24 r79088) -Windows Server 2012 R2 x64 (build 9600), R version 4.0.2 (2020-06-22) +Windows Server 2012 R2 x64 (build 9600), R Under development (unstable) (2022-07-13 r82587 ucrt) +Windows Server 2012 R2 x64 (build 9600), R version 4.2.1 (2022-06-23 ucrt) * win-builder: None for this submission @@ -32,13 +32,18 @@ None for this submission ## R CMD check results - * checking installed package size ... NOTE installed size is 6.5Mb sub-directories of 1Mb or more: libs 4.1Mb +## revdepcheck results + +We checked 18 reverse dependencies (4 from CRAN + 14 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. + + * We saw 0 new problems + * We failed to check 0 packages ## Thank you CRAN Core Team! diff --git a/revdep/.gitignore b/revdep/.gitignore new file mode 100644 index 0000000..111ab32 --- /dev/null +++ b/revdep/.gitignore @@ -0,0 +1,7 @@ +checks +library +checks.noindex +library.noindex +cloud.noindex +data.sqlite +*.html diff --git a/revdep/README.md b/revdep/README.md new file mode 100644 index 0000000..18edd1f --- /dev/null +++ b/revdep/README.md @@ -0,0 +1,70 @@ +# Platform + +|field |value | +|:--------|:----------------------------------------| +|version |R version 4.2.1 (2022-06-23) | +|os |Ubuntu 22.04 LTS | +|system |x86_64, linux-gnu | +|ui |RStudio | +|language |(EN) | +|collate |en_US.UTF-8 | +|ctype |en_US.UTF-8 | +|tz |America/Los_Angeles | +|date |2022-07-14 | +|rstudio |2022.02.3+492 Prairie Trillium (desktop) | +|pandoc |2.9.2.1 @ /usr/bin/pandoc | + +# Dependencies + +|package |old |new |Δ | +|:-----------|:------|:------|:--| +|vcfR |1.12.0 |1.13.0 |* | +|ape |5.6-2 |5.6-2 | | +|cli |3.3.0 |3.3.0 | | +|crayon |1.5.1 |1.5.1 | | +|dplyr |1.0.9 |1.0.9 | | +|ellipsis |0.3.2 |0.3.2 | | +|fansi |1.0.3 |1.0.3 | | +|generics |0.1.3 |0.1.3 | | +|glue |1.6.2 |1.6.2 | | +|lifecycle |1.0.1 |1.0.1 | | +|magrittr |2.0.3 |2.0.3 | | +|memuse |4.2-1 |4.2-1 | | +|permute |0.9-7 |0.9-7 | | +|pillar |1.7.0 |1.7.0 | | +|pinfsc50 |1.2.0 |1.2.0 | | +|pkgconfig |2.0.3 |2.0.3 | | +|purrr |0.3.4 |0.3.4 | | +|R6 |2.5.1 |2.5.1 | | +|Rcpp |1.0.9 |1.0.9 | | +|rlang |1.0.4 |1.0.4 | | +|stringi |1.7.8 |1.7.8 | | +|stringr |1.4.0 |1.4.0 | | +|tibble |3.1.7 |3.1.7 | | +|tidyselect |1.1.2 |1.1.2 | | +|utf8 |1.2.2 |1.2.2 | | +|vctrs |0.4.1 |0.4.1 | | +|vegan |2.6-2 |2.6-2 | | +|viridisLite |0.4.0 |0.4.0 | | + +# Revdeps + +## Failed to check (14) + +|package |version |error |warning |note | +|:--------------|:-------|:-----|:-------|:----| +|dartR |? | | | | +|epinetr |? | | | | +|GenomeAdmixR |? | | | | +|LDheatmap |? | | | | +|MADSEQ |? | | | | +|mappoly |? | | | | +|MixviR |? | | | | +|MoBPS |? | | | | +|onemap |? | | | | +|pcadapt |? | | | | +|perfectphyloR |? | | | | +|rehh |? | | | | +|SNPfiltR |? | | | | +|utr.annotation |? | | | | + diff --git a/revdep/cran.md b/revdep/cran.md new file mode 100644 index 0000000..f61e98c --- /dev/null +++ b/revdep/cran.md @@ -0,0 +1,7 @@ +## revdepcheck results + +We checked 18 reverse dependencies (4 from CRAN + 14 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. + + * We saw 0 new problems + * We failed to check 0 packages + diff --git a/revdep/email.yml b/revdep/email.yml new file mode 100644 index 0000000..0c5cef8 --- /dev/null +++ b/revdep/email.yml @@ -0,0 +1,5 @@ +release_date: ??? +rel_release_date: ??? +my_news_url: ??? +release_version: ??? +release_details: ??? diff --git a/revdep/failures.md b/revdep/failures.md new file mode 100644 index 0000000..0c1229c --- /dev/null +++ b/revdep/failures.md @@ -0,0 +1,462 @@ +# dartR + +
+ +* Version: +* GitHub: https://github.com/knausb/vcfR +* Source code: NA +* Number of recursive dependencies: 0 + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# epinetr + +
+ +* Version: +* GitHub: https://github.com/knausb/vcfR +* Source code: NA +* Number of recursive dependencies: 0 + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# GenomeAdmixR + +
+ +* Version: +* GitHub: https://github.com/knausb/vcfR +* Source code: NA +* Number of recursive dependencies: 0 + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# LDheatmap + +
+ +* Version: +* GitHub: https://github.com/knausb/vcfR +* Source code: NA +* Number of recursive dependencies: 0 + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# MADSEQ + +
+ +* Version: +* GitHub: https://github.com/knausb/vcfR +* Source code: NA +* Number of recursive dependencies: 0 + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# mappoly + +
+ +* Version: +* GitHub: https://github.com/knausb/vcfR +* Source code: NA +* Number of recursive dependencies: 0 + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# MixviR + +
+ +* Version: +* GitHub: https://github.com/knausb/vcfR +* Source code: NA +* Number of recursive dependencies: 0 + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# MoBPS + +
+ +* Version: +* GitHub: https://github.com/knausb/vcfR +* Source code: NA +* Number of recursive dependencies: 0 + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# onemap + +
+ +* Version: +* GitHub: https://github.com/knausb/vcfR +* Source code: NA +* Number of recursive dependencies: 0 + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# pcadapt + +
+ +* Version: +* GitHub: https://github.com/knausb/vcfR +* Source code: NA +* Number of recursive dependencies: 0 + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# perfectphyloR + +
+ +* Version: +* GitHub: https://github.com/knausb/vcfR +* Source code: NA +* Number of recursive dependencies: 0 + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# rehh + +
+ +* Version: +* GitHub: https://github.com/knausb/vcfR +* Source code: NA +* Number of recursive dependencies: 0 + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# SNPfiltR + +
+ +* Version: +* GitHub: https://github.com/knausb/vcfR +* Source code: NA +* Number of recursive dependencies: 0 + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# utr.annotation + +
+ +* Version: +* GitHub: https://github.com/knausb/vcfR +* Source code: NA +* Number of recursive dependencies: 0 + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` diff --git a/revdep/problems.md b/revdep/problems.md new file mode 100644 index 0000000..9a20736 --- /dev/null +++ b/revdep/problems.md @@ -0,0 +1 @@ +*Wow, no problems at all. :)* \ No newline at end of file