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Done Condition (What do we need? Why do we need it? Keep this is small as possible!)
Collect Feedback from Niki/Curation
Documentation Finalized
Adjustments from feedback made
If a large amount of changes are needed, meet and replan cards.
Feedback from Anusha 10/1:
Somatic Status Info is missing. (If I remember right all target studies have matched normals) data is not available, but Anusha will double-check this with Ritika
Can we link readme.md to study description?
Change Morphology Code --> Morphology to match with other sudies
Normalize attributes as some of them are not in Camel case Changed TUMOR_CLASSIFICATION to camel case
Disease Status is only 0.3%. Is that expected? It's only available for 15 patients in ALAL, which is correct-- for other studies it has been removed
There are a couple of samples where there is no mutation info. Eg:TARGET_10_PALKMM. Can we confirm that? This is correct, I added a note to the README saying that some patients may be missing mutation info
Can we check if there is segment data? Not in the format we want
bll_target_gdc has Biopsy site for only one sample Removed the attribute for BLL
Technical Description (How are we going to achieve the above)
Potential Issues
Dependencies
Technical Requirements
Outside People/Teams
Changes
The text was updated successfully, but these errors were encountered:
Done Condition (What do we need? Why do we need it? Keep this is small as possible!)
If a large amount of changes are needed, meet and replan cards.
Feedback from Anusha 10/1:
Technical Description (How are we going to achieve the above)
Potential Issues
Dependencies
Technical Requirements
Outside People/Teams
Changes
The text was updated successfully, but these errors were encountered: