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environment-elife.yml
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name: plant-seg-elife
channels:
- pytorch
- cpape
- anaconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- asciitree=0.3.3=py_2
- blas=1.0=mkl
- blosc=1.17.0=he1b5a44_1
- boost=1.68.0=py37h8619c78_1001
- boost-cpp=1.68.0=h11c811c_1000
- bzip2=1.0.8=h516909a_1
- ca-certificates=2019.9.11=hecc5488_0
- certifi=2019.9.11=py37_0
- cffi=1.12.3=py37h2e261b9_0
- click=7.0=py_0
- cloudpickle=1.2.2=py_0
- cudatoolkit=10.1.168=0
- cycler=0.10.0=py_1
- cytoolz=0.10.0=py37h516909a_0
- dask-core=2.6.0=py_0
- dbus=1.13.6=he372182_0
- decorator=4.4.0=py_0
- elf=0.1.0=py_0_gbe6da0c
- et_xmlfile=1.0.1=py_1001
- expat=2.2.5=he1b5a44_1004
- fasteners=0.14.1=py_3
- fftw=3.3.8=nompi_h7f3a6c3_1109
- fontconfig=2.13.1=he4413a7_1000
- freetype=2.10.0=he983fc9_1
- gettext=0.19.8.1=hc5be6a0_1002
- glib=2.58.3=h6f030ca_1002
- gst-plugins-base=1.14.5=h0935bb2_0
- gstreamer=1.14.5=h36ae1b5_0
- h5py=2.9.0=py37h7918eee_0
- hdf5=1.10.4=hb1b8bf9_0
- icu=58.2=hf484d3e_1000
- imageio=2.6.1=py37_0
- intel-openmp=2019.5=281
- jdcal=1.4.1=py_0
- joblib=0.13.2=py37_0
- jpeg=9c=h14c3975_1001
- kiwisolver=1.1.0=py37hc9558a2_0
- libedit=3.1.20181209=hc058e9b_0
- libffi=3.2.1=hd88cf55_4
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_0
- libiconv=1.15=h516909a_1005
- libpng=1.6.37=hed695b0_0
- libstdcxx-ng=9.1.0=hdf63c60_0
- libtiff=4.0.10=hfc65ed5_1004
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.9=h13577e0_2
- llvmlite=0.29.0=py37hfd453ef_1
- lz4-c=1.8.3=he1b5a44_1001
- matplotlib=3.1.1=py37h5429711_0
- mkl=2019.5=281
- mkl-service=2.3.0=py37he904b0f_0
- mkl_fft=1.0.14=py37ha843d7b_0
- mkl_random=1.1.0=py37hd6b4f25_0
- monotonic=1.5=py_0
- msgpack-python=0.6.2=py37hc9558a2_0
- ncurses=6.1=he6710b0_1
- networkx=2.4=py_0
- nifty=v1.0.7=py37_2
- ninja=1.9.0=py37hfd86e86_0
- nose=1.3.7=py37_1002
- numba=0.45.1=py37hb3f55d8_0
- numcodecs=0.6.3=py37hf484d3e_0
- numpy=1.17.2=py37haad9e8e_0
- numpy-base=1.17.2=py37hde5b4d6_0
- olefile=0.46=py_0
- openpyxl=3.0.0=py_0
- openssl=1.1.1c=h516909a_0
- pandas=0.25.2=py37hb3f55d8_0
- pcre=8.43=he1b5a44_0
- pillow=6.2.0=py37h34e0f95_0
- pip=19.3.1=py37_0
- pthread-stubs=0.4=h14c3975_1001
- pycparser=2.19=py37_0
- pyparsing=2.4.2=py_0
- pyqt=5.9.2=py37hcca6a23_4
- python=3.7.4=h265db76_1
- python-dateutil=2.8.0=py_0
- pytorch=1.3.0=py3.7_cuda10.1.243_cudnn7.6.3_0
- pytz=2019.3=py_0
- pywavelets=1.1.1=py37hc1659b7_0
- pywget=3.2=py37_0
- pyyaml=5.1.2=py37h7b6447c_0
- qt=5.9.7=h52cfd70_2
- readline=7.0=h7b6447c_5
- scikit-image=0.15.0=py37he6710b0_0
- scikit-learn=0.21.3=py37hd81dba3_0
- scipy=1.3.1=py37h7c811a0_0
- setuptools=41.4.0=py37_0
- sip=4.19.8=py37hf484d3e_0
- six=1.12.0=py37_0
- skan=0.8=py_0
- sqlite=3.30.0=h7b6447c_0
- tifffile=0.15.1=py37h3010b51_1001
- tk=8.6.8=hbc83047_0
- toolz=0.10.0=py_0
- torchvision=0.4.1=py37_cu101
- tornado=6.0.3=py37h516909a_0
- tqdm=4.36.1=py_0
- vigra=1.11.1=py37h96eb51f_1009
- wheel=0.33.6=py37_0
- xlrd=1.2.0=py_0
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xz=5.2.4=h14c3975_4
- yaml=0.1.7=h96e3832_1
- zarr=2.3.2=py37_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.4.3=h3b9ef0a_0
- pip:
- absl-py==0.8.1
- astor==0.8.0
- gast==0.2.2
- google-pasta==0.1.7
- grpcio==1.24.1
- keras-applications==1.0.8
- keras-preprocessing==1.1.0
- markdown==3.1.1
- opt-einsum==3.1.0
- protobuf==3.10.0
- tensorboard==2.0.0
- tensorboardx==1.9
- tensorflow==2.0.0
- tensorflow-estimator==2.0.1
- termcolor==1.1.0
- werkzeug==0.16.0
- wrapt==1.11.2
prefix: /home/lcerrone_local/miniconda3/envs/plant_seg