From 7f0b3931b9f8671c9a47fd55d4ae02bd53110f6d Mon Sep 17 00:00:00 2001
From: Marques <marquesel@almbp02246574.niehs.nih.gov>
Date: Fri, 15 Dec 2023 13:42:03 -0500
Subject: [PATCH] try to fix checks

---
 NAMESPACE                                            |  1 -
 R/process_monitors.R                                 |  2 +-
 R/process_spatial_covariates.R                       |  1 +
 vignettes/noaa_obs_processing_comparison_to_era5.Rmd | 11 +----------
 4 files changed, 3 insertions(+), 12 deletions(-)

diff --git a/NAMESPACE b/NAMESPACE
index e5fc34b..51ca6fb 100755
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -40,5 +40,4 @@ import(data.table)
 import(ggplot2)
 import(spatialsample)
 import(tidyr)
-importFrom(data.table,"%>%")
 importFrom(magrittr,"%>%")
diff --git a/R/process_monitors.R b/R/process_monitors.R
index a4080f4..a7d9e59 100755
--- a/R/process_monitors.R
+++ b/R/process_monitors.R
@@ -3,7 +3,7 @@
 #' @param filename character path to noaa observations file
 #' @returns a list with two datatable, one for the whole observations and
 #' the other with the location metadata only
-#' @importFrom data.table "%>%"
+#' @importFrom magrittr "%>%"
 #' @export
 format_noaa_aws <- function(filename) {
   na_flag <- NULL
diff --git a/R/process_spatial_covariates.R b/R/process_spatial_covariates.R
index b549782..28848c8 100755
--- a/R/process_spatial_covariates.R
+++ b/R/process_spatial_covariates.R
@@ -3,6 +3,7 @@
 #' @param in_filepath A character path to data file with high resolution
 #' @param out_filepath A character path to the folder where the aggregate file
 #' will be stored
+#' @importFrom magrittr "%>%"
 agg_rast <- function(in_filepath, out_filepath, agg_fact = 30) {
   raw <- terra::rast(in_filepath)
   agg <- terra::aggregate(raw, fact = agg_fact, fun = "median") %>%
diff --git a/vignettes/noaa_obs_processing_comparison_to_era5.Rmd b/vignettes/noaa_obs_processing_comparison_to_era5.Rmd
index ce6103c..1a28941 100755
--- a/vignettes/noaa_obs_processing_comparison_to_era5.Rmd
+++ b/vignettes/noaa_obs_processing_comparison_to_era5.Rmd
@@ -3,17 +3,8 @@ title: "NOAA observations processing and comparison to ERA5"
 date: "2023-12-15"
 author: "Eva Marques"
 output: rmarkdown::html_vignette
-vignette: >
-  %\VignetteIndexEntry{NOAA observations processing and comparison to ERA5}
-  %\VignetteEngine{knitr::rmarkdown}
-  %\VignetteEncoding{UTF-8}
-  
 ---
-```{r}
-library(knitr)
-# to base64 encode images
-opts_knit$set(upload.fun = image_uri)
-```
+
 
 ```{r}
 input_path <- "../input/"