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Contributor Covenant Code of Conduct

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Our Pledge

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We as members, contributors, and leaders pledge to make participation in our community a harassment-free experience for everyone, regardless of age, body size, visible or invisible disability, ethnicity, sex characteristics, gender identity and expression, level of experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, or sexual identity and orientation.

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We pledge to act and interact in ways that contribute to an open, welcoming, diverse, inclusive, and healthy community.

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Scope

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Enforcement

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Enforcement Guidelines

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Community leaders will follow these Community Impact Guidelines in determining the consequences for any action they deem in violation of this Code of Conduct:

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1. Correction

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Community Impact: Use of inappropriate language or other behavior deemed unprofessional or unwelcome in the community.

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Consequence: A private, written warning from community leaders, providing clarity around the nature of the violation and an explanation of why the behavior was inappropriate. A public apology may be requested.

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2. Warning

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Community Impact: A violation through a single incident or series of actions.

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Consequence: A warning with consequences for continued behavior. No interaction with the people involved, including unsolicited interaction with those enforcing the Code of Conduct, for a specified period of time. This includes avoiding interactions in community spaces as well as external channels like social media. Violating these terms may lead to a temporary or permanent ban.

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3. Temporary Ban

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Consequence: A temporary ban from any sort of interaction or public communication with the community for a specified period of time. No public or private interaction with the people involved, including unsolicited interaction with those enforcing the Code of Conduct, is allowed during this period. Violating these terms may lead to a permanent ban.

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4. Permanent Ban

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Community Impact: Demonstrating a pattern of violation of community standards, including sustained inappropriate behavior, harassment of an individual, or aggression toward or disparagement of classes of individuals.

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Consequence: A permanent ban from any sort of public interaction within the community.

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Attribution

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This Code of Conduct is adapted from the Contributor Covenant, version 2.1, available at https://www.contributor-covenant.org/version/2/1/code_of_conduct.html.

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Community Impact Guidelines were inspired by [Mozilla’s code of conduct enforcement ladder][https://github.com/mozilla/inclusion].

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For answers to common questions about this code of conduct, see the FAQ at https://www.contributor-covenant.org/faq. Translations are available at https://www.contributor-covenant.org/translations.

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License

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YEAR: 2024
+COPYRIGHT HOLDER: Philippe Grosjean
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MIT License

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Copyright (c) 2024 Philippe Grosjean

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Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

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The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

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THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

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learnitgrid - To Do list

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  • …
    • +
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Articles

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All vignettes

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+ +
learnitgrid - Rubrics or Assessment Grids for R Documents in GitHub Repos
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+
+
+
+ + +
+ + + + + + + + diff --git a/articles/learnitgrid.html b/articles/learnitgrid.html new file mode 100644 index 0000000..f5f4e89 --- /dev/null +++ b/articles/learnitgrid.html @@ -0,0 +1,118 @@ + + + + + + + +learnitgrid - Rubrics or Assessment Grids for R Documents in GitHub Repos • learnitgrid + + + + + + + + + + + + +
+
+ + + + +
+
+
+

learnitgrid - Rubrics or Assessment Grids for R +Documents in GitHub Repos

+

Philippe +Grosjean ()

+ +

2024-05-30

+ + Source: vignettes/learnitgrid.Rmd + + +
+ + + + +

TODO…

+
+ + + +
+ + + + +
+ + + + + + + + diff --git a/authors.html b/authors.html new file mode 100644 index 0000000..584dbad --- /dev/null +++ b/authors.html @@ -0,0 +1,103 @@ + +Authors and Citation • learnitgrid + + +
+
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+

Authors and Citation

+
+ + +
+
+
+

Citation

+ Source: inst/CITATION +
+
+ + +

Grosjean, Ph. & Engels, G. (2024). LearnIt::R. UMONS, Mons, Belgium. URL https://learnitr.r-universe.dev/.

+ 
@Manual{,
+  title = {LearnIt::R},
+  author = {Philippe Grosjean and Guyliann Engels},
+  organization = {UMONS},
+  address = {MONS, Belgium},
+  year = {2024},
+  url = {https://learnitr.r-universe.dev/},
+}
+ +
+ +
+ + + +
+ + + + + + + + diff --git a/bootstrap-toc.css b/bootstrap-toc.css new file mode 100644 index 0000000..5a85941 --- /dev/null +++ b/bootstrap-toc.css @@ -0,0 +1,60 @@ +/*! + * Bootstrap Table of Contents v0.4.1 (http://afeld.github.io/bootstrap-toc/) + * Copyright 2015 Aidan Feldman + * Licensed under MIT (https://github.com/afeld/bootstrap-toc/blob/gh-pages/LICENSE.md) */ + +/* modified from https://github.com/twbs/bootstrap/blob/94b4076dd2efba9af71f0b18d4ee4b163aa9e0dd/docs/assets/css/src/docs.css#L548-L601 */ + +/* All levels of nav */ +nav[data-toggle='toc'] .nav > li > a { + display: block; + padding: 4px 20px; + font-size: 13px; + font-weight: 500; + color: #767676; +} +nav[data-toggle='toc'] .nav > li > a:hover, +nav[data-toggle='toc'] .nav > li > a:focus { + padding-left: 19px; + color: #563d7c; + text-decoration: none; + background-color: transparent; + border-left: 1px solid #563d7c; +} +nav[data-toggle='toc'] .nav > .active > a, +nav[data-toggle='toc'] .nav > .active:hover > a, +nav[data-toggle='toc'] .nav > .active:focus > a { + padding-left: 18px; + font-weight: bold; + color: #563d7c; + background-color: transparent; + border-left: 2px solid #563d7c; +} + +/* Nav: second level (shown on .active) */ +nav[data-toggle='toc'] .nav .nav { + display: none; /* Hide by default, but at >768px, show it */ + padding-bottom: 10px; +} +nav[data-toggle='toc'] .nav .nav > li > a { + padding-top: 1px; + padding-bottom: 1px; + padding-left: 30px; + font-size: 12px; + font-weight: normal; +} +nav[data-toggle='toc'] .nav .nav > li > a:hover, +nav[data-toggle='toc'] .nav .nav > li > a:focus { + padding-left: 29px; +} +nav[data-toggle='toc'] .nav .nav > .active > a, +nav[data-toggle='toc'] .nav .nav > .active:hover > a, +nav[data-toggle='toc'] .nav .nav > .active:focus > a { + padding-left: 28px; + font-weight: 500; +} + +/* from https://github.com/twbs/bootstrap/blob/e38f066d8c203c3e032da0ff23cd2d6098ee2dd6/docs/assets/css/src/docs.css#L631-L634 */ +nav[data-toggle='toc'] .nav > .active > ul { + display: block; +} diff --git a/bootstrap-toc.js b/bootstrap-toc.js new file mode 100644 index 0000000..1cdd573 --- /dev/null +++ b/bootstrap-toc.js @@ -0,0 +1,159 @@ +/*! + * Bootstrap Table of Contents v0.4.1 (http://afeld.github.io/bootstrap-toc/) + * Copyright 2015 Aidan Feldman + * Licensed under MIT (https://github.com/afeld/bootstrap-toc/blob/gh-pages/LICENSE.md) */ +(function() { + 'use strict'; + + window.Toc = { + helpers: { + // return all matching elements in the set, or their descendants + findOrFilter: function($el, selector) { + // http://danielnouri.org/notes/2011/03/14/a-jquery-find-that-also-finds-the-root-element/ + // http://stackoverflow.com/a/12731439/358804 + var $descendants = $el.find(selector); + return $el.filter(selector).add($descendants).filter(':not([data-toc-skip])'); + }, + + generateUniqueIdBase: function(el) { + var text = $(el).text(); + var anchor = text.trim().toLowerCase().replace(/[^A-Za-z0-9]+/g, '-'); + return anchor || el.tagName.toLowerCase(); + }, + + generateUniqueId: function(el) { + var anchorBase = this.generateUniqueIdBase(el); + for (var i = 0; ; i++) { + var anchor = anchorBase; + if (i > 0) { + // add suffix + anchor += '-' + i; + } + // check if ID already exists + if (!document.getElementById(anchor)) { + return anchor; + } + } + }, + + generateAnchor: function(el) { + if (el.id) { + return el.id; + } else { + var anchor = this.generateUniqueId(el); + el.id = anchor; + return anchor; + } + }, + + createNavList: function() { + return $(''); + }, + + createChildNavList: function($parent) { + var $childList = this.createNavList(); + $parent.append($childList); + return $childList; + }, + + generateNavEl: function(anchor, text) { + var $a = $(''); + $a.attr('href', '#' + anchor); + $a.text(text); + var $li = $('
  • '); + $li.append($a); + return $li; + }, + + generateNavItem: function(headingEl) { + var anchor = this.generateAnchor(headingEl); + var $heading = $(headingEl); + var text = $heading.data('toc-text') || $heading.text(); + return this.generateNavEl(anchor, text); + }, + + // Find the first heading level (`

    `, then `

    `, etc.) that has more than one element. Defaults to 1 (for `

    `). + getTopLevel: function($scope) { + for (var i = 1; i <= 6; i++) { + var $headings = this.findOrFilter($scope, 'h' + i); + if ($headings.length > 1) { + return i; + } + } + + return 1; + }, + + // returns the elements for the top level, and the next below it + getHeadings: function($scope, topLevel) { + var topSelector = 'h' + topLevel; + + var secondaryLevel = topLevel + 1; + var secondarySelector = 'h' + secondaryLevel; + + return this.findOrFilter($scope, topSelector + ',' + secondarySelector); + }, + + getNavLevel: function(el) { + return parseInt(el.tagName.charAt(1), 10); + }, + + populateNav: function($topContext, topLevel, $headings) { + var $context = $topContext; + var $prevNav; + + var helpers = this; + $headings.each(function(i, el) { + var $newNav = helpers.generateNavItem(el); + var navLevel = helpers.getNavLevel(el); + + // determine the proper $context + if (navLevel === topLevel) { + // use top level + $context = $topContext; + } else if ($prevNav && $context === $topContext) { + // create a new level of the tree and switch to it + $context = helpers.createChildNavList($prevNav); + } // else use the current $context + + $context.append($newNav); + + $prevNav = $newNav; + }); + }, + + parseOps: function(arg) { + var opts; + if (arg.jquery) { + opts = { + $nav: arg + }; + } else { + opts = arg; + } + opts.$scope = opts.$scope || $(document.body); + return opts; + } + }, + + // accepts a jQuery object, or an options object + init: function(opts) { + opts = this.helpers.parseOps(opts); + + // ensure that the data attribute is in place for styling + opts.$nav.attr('data-toggle', 'toc'); + + var $topContext = this.helpers.createChildNavList(opts.$nav); + var topLevel = this.helpers.getTopLevel(opts.$scope); + var $headings = this.helpers.getHeadings(opts.$scope, topLevel); + this.helpers.populateNav($topContext, topLevel, $headings); + } + }; + + $(function() { + $('nav[data-toggle="toc"]').each(function(i, el) { + var $nav = $(el); + Toc.init($nav); + }); + }); +})(); diff --git a/docsearch.css b/docsearch.css new file mode 100644 index 0000000..e5f1fe1 --- /dev/null +++ b/docsearch.css @@ -0,0 +1,148 @@ +/* Docsearch -------------------------------------------------------------- */ +/* + Source: https://github.com/algolia/docsearch/ + License: MIT +*/ + +.algolia-autocomplete { + display: block; + -webkit-box-flex: 1; + -ms-flex: 1; + flex: 1 +} + +.algolia-autocomplete .ds-dropdown-menu { + width: 100%; + min-width: none; + max-width: none; + padding: .75rem 0; + background-color: #fff; + background-clip: padding-box; + border: 1px solid rgba(0, 0, 0, .1); + box-shadow: 0 .5rem 1rem rgba(0, 0, 0, .175); +} + +@media (min-width:768px) { + .algolia-autocomplete .ds-dropdown-menu { + width: 175% + } +} + +.algolia-autocomplete .ds-dropdown-menu::before { + display: none +} + +.algolia-autocomplete .ds-dropdown-menu [class^=ds-dataset-] { + padding: 0; + background-color: rgb(255,255,255); + border: 0; + max-height: 80vh; +} + +.algolia-autocomplete .ds-dropdown-menu .ds-suggestions { + margin-top: 0 +} + +.algolia-autocomplete .algolia-docsearch-suggestion { + padding: 0; + overflow: visible +} + +.algolia-autocomplete .algolia-docsearch-suggestion--category-header { + padding: .125rem 1rem; + margin-top: 0; + font-size: 1.3em; + font-weight: 500; + color: #00008B; + border-bottom: 0 +} + +.algolia-autocomplete .algolia-docsearch-suggestion--wrapper { + float: none; + padding-top: 0 +} + +.algolia-autocomplete .algolia-docsearch-suggestion--subcategory-column { + float: none; + width: auto; + padding: 0; + text-align: left +} + +.algolia-autocomplete .algolia-docsearch-suggestion--content { + float: none; + width: auto; + padding: 0 +} + +.algolia-autocomplete .algolia-docsearch-suggestion--content::before { + display: none +} + +.algolia-autocomplete .ds-suggestion:not(:first-child) .algolia-docsearch-suggestion--category-header { + padding-top: .75rem; + margin-top: .75rem; + border-top: 1px solid rgba(0, 0, 0, .1) +} + +.algolia-autocomplete .ds-suggestion .algolia-docsearch-suggestion--subcategory-column { + display: block; + padding: .1rem 1rem; + margin-bottom: 0.1; + font-size: 1.0em; + font-weight: 400 + /* display: none */ +} + +.algolia-autocomplete .algolia-docsearch-suggestion--title { + display: block; + padding: .25rem 1rem; + margin-bottom: 0; + font-size: 0.9em; + font-weight: 400 +} + +.algolia-autocomplete .algolia-docsearch-suggestion--text { + padding: 0 1rem .5rem; + margin-top: -.25rem; + font-size: 0.8em; + font-weight: 400; + line-height: 1.25 +} + +.algolia-autocomplete .algolia-docsearch-footer { + width: 110px; + height: 20px; + z-index: 3; + margin-top: 10.66667px; + float: right; + font-size: 0; + line-height: 0; +} + +.algolia-autocomplete .algolia-docsearch-footer--logo { + background-image: url("data:image/svg+xml;utf8,"); + background-repeat: no-repeat; + background-position: 50%; + background-size: 100%; + overflow: hidden; + text-indent: -9000px; + width: 100%; + height: 100%; + display: block; + transform: translate(-8px); +} + +.algolia-autocomplete .algolia-docsearch-suggestion--highlight { + color: #FF8C00; + background: rgba(232, 189, 54, 0.1) +} + + +.algolia-autocomplete .algolia-docsearch-suggestion--text .algolia-docsearch-suggestion--highlight { + box-shadow: inset 0 -2px 0 0 rgba(105, 105, 105, .5) +} + +.algolia-autocomplete .ds-suggestion.ds-cursor .algolia-docsearch-suggestion--content { + background-color: rgba(192, 192, 192, .15) +} diff --git a/docsearch.js b/docsearch.js new file mode 100644 index 0000000..b35504c --- /dev/null +++ b/docsearch.js @@ -0,0 +1,85 @@ +$(function() { + + // register a handler to move the focus to the search bar + // upon pressing shift + "/" (i.e. "?") + $(document).on('keydown', function(e) { + if (e.shiftKey && e.keyCode == 191) { + e.preventDefault(); + $("#search-input").focus(); + } + }); + + $(document).ready(function() { + // do keyword highlighting + /* modified from https://jsfiddle.net/julmot/bL6bb5oo/ */ + var mark = function() { + + var referrer = document.URL ; + var paramKey = "q" ; + + if (referrer.indexOf("?") !== -1) { + var qs = referrer.substr(referrer.indexOf('?') + 1); + var qs_noanchor = qs.split('#')[0]; + var qsa = qs_noanchor.split('&'); + var keyword = ""; + + for (var i = 0; i < qsa.length; i++) { + var currentParam = qsa[i].split('='); + + if (currentParam.length !== 2) { + continue; + } + + if (currentParam[0] == paramKey) { + keyword = decodeURIComponent(currentParam[1].replace(/\+/g, "%20")); + } + } + + if (keyword !== "") { + $(".contents").unmark({ + done: function() { + $(".contents").mark(keyword); + } + }); + } + } + }; + + mark(); + }); +}); + +/* Search term highlighting ------------------------------*/ + +function matchedWords(hit) { + var words = []; + + var hierarchy = hit._highlightResult.hierarchy; + // loop to fetch from lvl0, lvl1, etc. + for (var idx in hierarchy) { + words = words.concat(hierarchy[idx].matchedWords); + } + + var content = hit._highlightResult.content; + if (content) { + words = words.concat(content.matchedWords); + } + + // return unique words + var words_uniq = [...new Set(words)]; + return words_uniq; +} + +function updateHitURL(hit) { + + var words = matchedWords(hit); + var url = ""; + + if (hit.anchor) { + url = hit.url_without_anchor + '?q=' + escape(words.join(" ")) + '#' + hit.anchor; + } else { + url = hit.url + '?q=' + escape(words.join(" ")); + } + + return url; +} diff --git a/index.html b/index.html new file mode 100644 index 0000000..cf6a571 --- /dev/null +++ b/index.html @@ -0,0 +1,171 @@ + + + + + + + +Manage Rubrics or Assessment Grids for GitHub Repositories • learnitgrid + + + + + + + + + + + + +
    +
    + + + + +
    +
    + +
    + + + + +

    Marking work on the basis of marking grids is time-consuming and requires particular attention to ensure fair marking from one student to another.

    +

    learnitgrid, via a new web application {shiny}, makes it possible to mark all the work in a series criterion by criterion. The relevant part of each piece of work, identified by a title or a piece label, is extracted from the R/R Markdown/ Quarto documents. These extracts are grouped and sorted automatically using a text similarity calculation algorithm in the {stringdist} package. This makes it easier to score similar responses in the same way. This method also reduces the time needed for correction. Clickable links allow quick access to the complete job and to any context (dataset, additional documents, etc.), which further improves the speed of correction and the user’s comfort when filling in the criteria grids.

    +

    This package is associated with and enhances the {learnitdown} package.

    +
    +

    Installation +

    +

    You can install the development version of {learnitgrid} from GitHub with:

    +
    +# install.packages("remotes")
+remotes::install_github("learnitr/learnitgrid")
    +
    +
    +

    Example +

    +

    This is a basic example which shows you how to solve a common problem:

    +
    +library(learnitgrid)
+## basic example code
    +
    +
    +
    +

    Code of Conduct +

    +

    Please note that the {learnitgrid} package is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

    +
    + +
    + + +
    + + + +
    + + + + + + + + diff --git a/link.svg b/link.svg new file mode 100644 index 0000000..88ad827 --- /dev/null +++ b/link.svg @@ -0,0 +1,12 @@ + + + + + + diff --git a/news/index.html b/news/index.html new file mode 100644 index 0000000..54ec577 --- /dev/null +++ b/news/index.html @@ -0,0 +1,104 @@ + +Changelog • learnitgrid + + +
    +
    + + + +
    +
    +
    +

    Changelog

    + Source: NEWS.md +
    + +
    +

    learnitgrid 0.7.1

    +
    • Several package dependencies are eliminated.
      • +
    +
    +

    learnitgrid 0.7.0

    +
    • Repo transferred to learnitr.
      • +
    +
    +

    learnitgrid 0.6.0

    +

    • Renamed (from shiny_assess) and partly refactored.

      • +

    • Second tab by grid added.

      • +

    • Use a correction repository and check R objects (to be finished).

      • +
    +
    +

    learnitgrid 0.5.1

    +
    • Allow for bonus points (max = 0 and score higher than max in this case).
      • +
    +
    +

    learnitgrid 0.5.0

    +
    • Adjustment for teams + use of _corr.Rmd version.
      • +
    +
    +

    learnitgrid 0.4.0

    +
    • Versions 0.1.0 - 0.4.0: initial concept and code.
      • +
    +
    + + + +
    + + +
    + + + + + + + + diff --git a/pkgdown.css b/pkgdown.css new file mode 100644 index 0000000..80ea5b8 --- /dev/null +++ b/pkgdown.css @@ -0,0 +1,384 @@ +/* Sticky footer */ + +/** + * Basic idea: https://philipwalton.github.io/solved-by-flexbox/demos/sticky-footer/ + * Details: https://github.com/philipwalton/solved-by-flexbox/blob/master/assets/css/components/site.css + * + * .Site -> body > .container + * .Site-content -> body > .container .row + * .footer -> footer + * + * Key idea seems to be to ensure that .container and __all its parents__ + * have height set to 100% + * + */ + +html, body { + height: 100%; +} + +body { + position: relative; +} + +body > .container { + display: flex; + height: 100%; + flex-direction: column; +} + +body > .container .row { + flex: 1 0 auto; +} + +footer { + margin-top: 45px; + padding: 35px 0 36px; + border-top: 1px solid #e5e5e5; + color: #666; + display: flex; + flex-shrink: 0; +} +footer p { + margin-bottom: 0; +} +footer div { + flex: 1; +} +footer .pkgdown { + text-align: right; +} +footer p { + margin-bottom: 0; +} + +img.icon { + float: right; +} + +/* Ensure in-page images don't run outside their container */ +.contents img { + max-width: 100%; + height: auto; +} + +/* Fix bug in bootstrap (only seen in firefox) */ +summary { + display: list-item; +} + +/* Typographic tweaking ---------------------------------*/ + +.contents .page-header { + margin-top: calc(-60px + 1em); +} + +dd { + margin-left: 3em; +} + +/* Section anchors ---------------------------------*/ + +a.anchor { + display: none; + margin-left: 5px; + width: 20px; + height: 20px; + + background-image: url(./link.svg); + background-repeat: no-repeat; + background-size: 20px 20px; + background-position: center center; +} + +h1:hover .anchor, +h2:hover .anchor, +h3:hover .anchor, +h4:hover .anchor, +h5:hover .anchor, +h6:hover .anchor { + display: inline-block; +} + +/* Fixes for fixed navbar --------------------------*/ + +.contents h1, .contents h2, .contents h3, .contents h4 { + padding-top: 60px; + margin-top: -40px; +} + +/* Navbar submenu --------------------------*/ + +.dropdown-submenu { + position: relative; +} + +.dropdown-submenu>.dropdown-menu { + top: 0; + left: 100%; + margin-top: -6px; + margin-left: -1px; + border-radius: 0 6px 6px 6px; +} + +.dropdown-submenu:hover>.dropdown-menu { + display: block; +} + +.dropdown-submenu>a:after { + display: block; + content: " "; + float: right; + width: 0; + height: 0; + border-color: transparent; + border-style: solid; + border-width: 5px 0 5px 5px; + border-left-color: #cccccc; + margin-top: 5px; + margin-right: -10px; +} + +.dropdown-submenu:hover>a:after { + border-left-color: #ffffff; +} + +.dropdown-submenu.pull-left { + float: none; +} + +.dropdown-submenu.pull-left>.dropdown-menu { + left: -100%; + margin-left: 10px; + border-radius: 6px 0 6px 6px; +} + +/* Sidebar --------------------------*/ + +#pkgdown-sidebar { + margin-top: 30px; + position: -webkit-sticky; + position: sticky; + top: 70px; +} + +#pkgdown-sidebar h2 { + font-size: 1.5em; + margin-top: 1em; +} + +#pkgdown-sidebar h2:first-child { + margin-top: 0; +} + +#pkgdown-sidebar .list-unstyled li { + margin-bottom: 0.5em; +} + +/* bootstrap-toc tweaks ------------------------------------------------------*/ + +/* All levels of nav */ + +nav[data-toggle='toc'] .nav > li > a { + padding: 4px 20px 4px 6px; + font-size: 1.5rem; + font-weight: 400; + color: inherit; +} + +nav[data-toggle='toc'] .nav > li > a:hover, +nav[data-toggle='toc'] .nav > li > a:focus { + padding-left: 5px; + color: inherit; + border-left: 1px solid #878787; +} + +nav[data-toggle='toc'] .nav > .active > a, +nav[data-toggle='toc'] .nav > .active:hover > a, +nav[data-toggle='toc'] .nav > .active:focus > a { + padding-left: 5px; + font-size: 1.5rem; + font-weight: 400; + color: inherit; + border-left: 2px solid #878787; +} + +/* Nav: second level (shown on .active) */ + +nav[data-toggle='toc'] .nav .nav { + display: none; /* Hide by default, but at >768px, show it */ + padding-bottom: 10px; +} + +nav[data-toggle='toc'] .nav .nav > li > a { + padding-left: 16px; + font-size: 1.35rem; +} + +nav[data-toggle='toc'] .nav .nav > li > a:hover, +nav[data-toggle='toc'] .nav .nav > li > a:focus { + padding-left: 15px; +} + +nav[data-toggle='toc'] .nav .nav > .active > a, +nav[data-toggle='toc'] .nav .nav > .active:hover > a, +nav[data-toggle='toc'] .nav .nav > .active:focus > a { + padding-left: 15px; + font-weight: 500; + font-size: 1.35rem; +} + +/* orcid ------------------------------------------------------------------- */ + +.orcid { + font-size: 16px; + color: #A6CE39; + /* margins are required by official ORCID trademark and display guidelines */ + margin-left:4px; + margin-right:4px; + vertical-align: middle; +} + +/* Reference index & topics ----------------------------------------------- */ + +.ref-index th {font-weight: normal;} + +.ref-index td {vertical-align: top; min-width: 100px} +.ref-index .icon {width: 40px;} +.ref-index .alias {width: 40%;} +.ref-index-icons .alias {width: calc(40% - 40px);} +.ref-index .title {width: 60%;} + +.ref-arguments th {text-align: right; padding-right: 10px;} +.ref-arguments th, .ref-arguments td {vertical-align: top; min-width: 100px} +.ref-arguments .name {width: 20%;} +.ref-arguments .desc {width: 80%;} + +/* Nice scrolling for wide elements --------------------------------------- */ + +table { + display: block; + overflow: auto; +} + +/* Syntax highlighting ---------------------------------------------------- */ + +pre, code, pre code { + background-color: #f8f8f8; + color: #333; +} +pre, pre code { + white-space: pre-wrap; + word-break: break-all; + overflow-wrap: break-word; +} + +pre { + border: 1px solid #eee; +} + +pre .img, pre .r-plt { + margin: 5px 0; +} + +pre .img img, pre .r-plt img { + background-color: #fff; +} + +code a, pre a { + color: #375f84; +} + +a.sourceLine:hover { + text-decoration: none; +} + +.fl {color: #1514b5;} +.fu {color: #000000;} /* function */ +.ch,.st {color: #036a07;} /* string */ +.kw {color: #264D66;} /* keyword */ +.co {color: #888888;} /* comment */ + +.error {font-weight: bolder;} +.warning {font-weight: bolder;} + +/* Clipboard --------------------------*/ + +.hasCopyButton { + position: relative; +} + +.btn-copy-ex { + position: absolute; + right: 0; + top: 0; + visibility: hidden; +} + +.hasCopyButton:hover button.btn-copy-ex { + visibility: visible; +} + +/* headroom.js ------------------------ */ + +.headroom { + will-change: transform; + transition: transform 200ms linear; +} +.headroom--pinned { + transform: translateY(0%); +} +.headroom--unpinned { + transform: translateY(-100%); +} + +/* mark.js ----------------------------*/ + +mark { + background-color: rgba(255, 255, 51, 0.5); + border-bottom: 2px solid rgba(255, 153, 51, 0.3); + padding: 1px; +} + +/* vertical spacing after htmlwidgets */ +.html-widget { + margin-bottom: 10px; +} + +/* fontawesome ------------------------ */ + +.fab { + font-family: "Font Awesome 5 Brands" !important; +} + +/* don't display links in code chunks when printing */ +/* source: https://stackoverflow.com/a/10781533 */ +@media print { + code a:link:after, code a:visited:after { + content: ""; + } +} + +/* Section anchors --------------------------------- + Added in pandoc 2.11: https://github.com/jgm/pandoc-templates/commit/9904bf71 +*/ + +div.csl-bib-body { } +div.csl-entry { + clear: both; +} +.hanging-indent div.csl-entry { + margin-left:2em; + text-indent:-2em; +} +div.csl-left-margin { + min-width:2em; + float:left; +} +div.csl-right-inline { + margin-left:2em; + padding-left:1em; +} +div.csl-indent { + margin-left: 2em; +} diff --git a/pkgdown.js b/pkgdown.js new file mode 100644 index 0000000..6f0eee4 --- /dev/null +++ b/pkgdown.js @@ -0,0 +1,108 @@ +/* http://gregfranko.com/blog/jquery-best-practices/ */ +(function($) { + $(function() { + + $('.navbar-fixed-top').headroom(); + + $('body').css('padding-top', $('.navbar').height() + 10); + $(window).resize(function(){ + $('body').css('padding-top', $('.navbar').height() + 10); + }); + + $('[data-toggle="tooltip"]').tooltip(); + + var cur_path = paths(location.pathname); + var links = $("#navbar ul li a"); + var max_length = -1; + var pos = -1; + for (var i = 0; i < links.length; i++) { + if (links[i].getAttribute("href") === "#") + continue; + // Ignore external links + if (links[i].host !== location.host) + continue; + + var nav_path = paths(links[i].pathname); + + var length = prefix_length(nav_path, cur_path); + if (length > max_length) { + max_length = length; + pos = i; + } + } + + // Add class to parent
  • , and enclosing
  • if in dropdown + if (pos >= 0) { + var menu_anchor = $(links[pos]); + menu_anchor.parent().addClass("active"); + menu_anchor.closest("li.dropdown").addClass("active"); + } + }); + + function paths(pathname) { + var pieces = pathname.split("/"); + pieces.shift(); // always starts with / + + var end = pieces[pieces.length - 1]; + if (end === "index.html" || end === "") + pieces.pop(); + return(pieces); + } + + // Returns -1 if not found + function prefix_length(needle, haystack) { + if (needle.length > haystack.length) + return(-1); + + // Special case for length-0 haystack, since for loop won't run + if (haystack.length === 0) { + return(needle.length === 0 ? 0 : -1); + } + + for (var i = 0; i < haystack.length; i++) { + if (needle[i] != haystack[i]) + return(i); + } + + return(haystack.length); + } + + /* Clipboard --------------------------*/ + + function changeTooltipMessage(element, msg) { + var tooltipOriginalTitle=element.getAttribute('data-original-title'); + element.setAttribute('data-original-title', msg); + $(element).tooltip('show'); + element.setAttribute('data-original-title', tooltipOriginalTitle); + } + + if(ClipboardJS.isSupported()) { + $(document).ready(function() { + var copyButton = ""; + + $("div.sourceCode").addClass("hasCopyButton"); + + // Insert copy buttons: + $(copyButton).prependTo(".hasCopyButton"); + + // Initialize tooltips: + $('.btn-copy-ex').tooltip({container: 'body'}); + + // Initialize clipboard: + var clipboardBtnCopies = new ClipboardJS('[data-clipboard-copy]', { + text: function(trigger) { + return trigger.parentNode.textContent.replace(/\n#>[^\n]*/g, ""); + } + }); + + clipboardBtnCopies.on('success', function(e) { + changeTooltipMessage(e.trigger, 'Copied!'); + e.clearSelection(); + }); + + clipboardBtnCopies.on('error', function() { + changeTooltipMessage(e.trigger,'Press Ctrl+C or Command+C to copy'); + }); + }); + } +})(window.jQuery || window.$) diff --git a/pkgdown.yml b/pkgdown.yml new file mode 100644 index 0000000..876e70b --- /dev/null +++ b/pkgdown.yml @@ -0,0 +1,10 @@ +pandoc: 3.1.11 +pkgdown: 2.0.9 +pkgdown_sha: ~ +articles: + learnitgrid: learnitgrid.html +last_built: 2024-05-30T15:05Z +urls: + reference: https://learnitr.github.io/learnitgrid/reference + article: https://learnitr.github.io/learnitgrid/articles + diff --git a/reference/Rplot001.png b/reference/Rplot001.png new file mode 100644 index 0000000..17a3580 Binary files /dev/null and b/reference/Rplot001.png differ diff --git a/reference/check_grids.html b/reference/check_grids.html new file mode 100644 index 0000000..c08c7d0 --- /dev/null +++ b/reference/check_grids.html @@ -0,0 +1,109 @@ + +Summarize and check evaluation grids for the learnitgrid Shiny app — check_grids • learnitgrid + + +
    +
    + + + +
    +
    +
    +

    Summarize and check evaluation grids for the learnitgrid Shiny app

    + Source: R/check_grids.R + +
    + +
    +

    This function checks all evaluation grids in a correction set and computes +the required statistics for the summary page of the learnitgrid shiny app.

    +
    + +
    + 
    check_grids(dir, save.log = TRUE, save.rds = TRUE)
    +
    + +
    +

    Arguments

    +
    dir
    +

    The path to the evaluation grids

    + + +
    save.log
    +

    Should a log file be saved (yes by default)?

    + + +
    save.rds
    +

    Should an RDS file with the data be saved (yes by default)?

    + +
    +
    +

    Value

    + + +

    A data frame with the results of the evaluation grids check for the +learnitgrid Shiny app.

    +
    + +
    + +
    + + +
    + + + + + + + + diff --git a/reference/chunk_labels.html b/reference/chunk_labels.html new file mode 100644 index 0000000..53d2586 --- /dev/null +++ b/reference/chunk_labels.html @@ -0,0 +1,105 @@ + +Make proper Rmd/Qmd chunk labels from strings for parsermd::parse_rmd() — chunk_labels • learnitgrid + + +
    +
    + + + +
    +
    +
    +

    Make proper Rmd/Qmd chunk labels from strings for parsermd::parse_rmd()

    + Source: R/utils.R + +
    + +
    +

    Make proper Rmd/Qmd chunk labels from strings for parsermd::parse_rmd()

    +
    + +
    + 
    chunk_labels(x)
    +
    + +
    +

    Arguments

    +
    x
    +

    A character string of chunk labels to convert

    + +
    +
    +

    Value

    + + +

    A character string of the same length as x with "educated" labels.

    +
    + +
    +

    Examples

    + 
    chunk_labels(c("Summer is hot", "", NA, " ", "Winter is cold  "))
+#> [1] "Summer_is_hot"  ""               NA               " "             
+#> [5] "Winter_is_cold"
+
    +
    +
    + +
    + + +
    + + + + + + + + diff --git a/reference/correct_rmd.html b/reference/correct_rmd.html new file mode 100644 index 0000000..cb85e26 --- /dev/null +++ b/reference/correct_rmd.html @@ -0,0 +1,98 @@ + +Make sure that Rmd/Qmd chunk labels are written without spaces — correct_rmd • learnitgrid + + +
    +
    + + + +
    +
    +
    +

    Make sure that Rmd/Qmd chunk labels are written without spaces

    + Source: R/utils.R + +
    + +
    +

    Make sure that Rmd/Qmd chunk labels are written without spaces

    +
    + +
    + 
    correct_rmd(rmd)
    +
    + +
    +

    Arguments

    +
    rmd
    +

    Character string with the content of a Rmd/Qmd file.

    + +
    +
    +

    Value

    + + +

    The same Rmd/Qmd content, but with "educated" chunk labels.

    +
    + +
    + +
    + + +
    + + + + + + + + diff --git a/reference/create_context.html b/reference/create_context.html new file mode 100644 index 0000000..d467c6a --- /dev/null +++ b/reference/create_context.html @@ -0,0 +1,137 @@ + +Create a context object for a correction set — create_context • learnitgrid + + +
    +
    + + + +
    +
    +
    +

    Create a context object for a correction set

    + Source: R/create_context.R + +
    + +
    +

    Create a list that contains context for a given correction set (must be +recalculated when a different correction set/project is selected).

    +
    + +
    + 
    create_context(
+  correction,
+  base_corr_dir,
+  base_templ_dir,
+  base_repos_dir,
+  repositories,
+  assignments,
+  github_url,
+  branch
+)
    +
    + +
    +

    Arguments

    +
    correction
    +

    The correction set

    + + +
    base_corr_dir
    +

    The base directory for correction sets

    + + +
    base_templ_dir
    +

    The base directory for correction templates

    + + +
    base_repos_dir
    +

    The vase directory for GitHub repositories to correct

    + + +
    repositories
    +

    The repositories

    + + +
    assignments
    +

    The assignments

    + + +
    github_url
    +

    The GitHub URL (base part)

    + + +
    branch
    +

    The GitHub branch concerned by this correction

    + +
    +
    +

    Value

    + + +

    A list with the context information for the learnitgrid Shiny app.

    +
    + +
    + +
    + + +
    + + + + + + + + diff --git a/reference/dir_path_create.html b/reference/dir_path_create.html new file mode 100644 index 0000000..4ba9966 --- /dev/null +++ b/reference/dir_path_create.html @@ -0,0 +1,121 @@ + +Make sure a directory exists, or create it — dir_path_create • learnitgrid + + +
    +
    + + + +
    +
    +
    +

    Make sure a directory exists, or create it

    + Source: R/utils.R + +
    + +
    +

    Make sure a directory exists, or create it

    +
    + +
    + 
    dir_path_create(...)
+
+dir_path_check(...)
+
+file_path_check(...)
    +
    + +
    +

    Arguments

    +
    ...
    +

    The successive folders that make the path.

    + +
    +
    +

    Value

    + + +

    A path object is returned invisibly.

    +
    +
    +

    Functions

    + +

    • dir_path_check(): Check that a directory exists.

      • +

    • file_path_check(): Check that a file exists.

      • +
    + +
    +

    Examples

    + 
    test_path <- dir_path_create(tempdir(), "dir_path_create_test", "subfolder")
+test_path
+#> /tmp/RtmpAcbx3h/dir_path_create_test/subfolder
+dir.exists(test_path) # Should be TRUE
+#> [1] TRUE
+dir_path_check(test_path) # Return the path only if it exists
+# Remove
+unlink(test_path)
+unlink(dirname(test_path))
+
    +
    +
    + +
    + + +
    + + + + + + + + diff --git a/reference/get_git_stats.html b/reference/get_git_stats.html new file mode 100644 index 0000000..0b499d6 --- /dev/null +++ b/reference/get_git_stats.html @@ -0,0 +1,118 @@ + +Summarize the git stats for one or more git repositories — get_git_stats • learnitgrid + + +
    +
    + + + +
    +
    +
    +

    Summarize the git stats for one or more git repositories

    + Source: R/get_git_stats.R + +
    + +
    +

    Use data from a git_stats.csv file to get a history of commits +done in a repository for the learnitgrid Shiny app.

    +
    + +
    + 
    get_git_stats(
+  git_stats_file,
+  exclude_authors = "github-classroom[bot]",
+  type = "all",
+  tz = "UTC"
+)
    +
    + +
    +

    Arguments

    +
    git_stats_file
    +

    The path the the git_stats.csv file

    + + +
    exclude_authors
    +

    The list of authors to exclude from the stats

    + + +
    type
    +

    The type of files to consider ("all", "R", "Rmd", or "Qmd")

    + + +
    tz
    +

    The time zone to use for times

    + +
    +
    +

    Value

    + + +

    A data frame with git stats data to be used by the learnitgrid Shiny +app.

    +
    + +
    + +
    + + +
    + + + + + + + + diff --git a/reference/index.html b/reference/index.html new file mode 100644 index 0000000..bb7e74f --- /dev/null +++ b/reference/index.html @@ -0,0 +1,112 @@ + +Function reference • learnitgrid + + +
    +
    + + + +
    +
    +
    +

    Reference

    +
    + + + + + + + + + + + + + + + + + + +
    +

    All functions

    +

    +
    +

    check_grids()

    +

    Summarize and check evaluation grids for the learnitgrid Shiny app

    +

    chunk_labels()

    +

    Make proper Rmd/Qmd chunk labels from strings for parsermd::parse_rmd()

    +

    correct_rmd()

    +

    Make sure that Rmd/Qmd chunk labels are written without spaces

    +

    create_context()

    +

    Create a context object for a correction set

    +

    dir_path_create() dir_path_check() file_path_check()

    +

    Make sure a directory exists, or create it

    +

    get_git_stats()

    +

    Summarize the git stats for one or more git repositories

    +

    link_to_www() www_relative()

    +

    Create symbolic links under www subdirectory or strip www subdirectory from the path

    +

    populate_table()

    +

    Computes the content of a DT::datatable for a correction set

    + + +
    + + +
    + + + + + + + + diff --git a/reference/learnitgrid-package.html b/reference/learnitgrid-package.html new file mode 100644 index 0000000..aaf7f63 --- /dev/null +++ b/reference/learnitgrid-package.html @@ -0,0 +1,111 @@ + +learnitgrid: Manage Rubrics or Assessment Grids for GitHub Repositories — learnitgrid-package • learnitgrid + + +
    +
    + + + +
    +
    +
    +

    learnitgrid: Manage Rubrics or Assessment Grids for GitHub Repositories

    + Source: R/learnitgrid-package.R + +
    + +
    +

    Create and manage semi-automatically rubrics to assess GitHub projects (R scripts, R Markdown or Quarto files). Create directed projects where students have to complete documents and submit them to GitHub (classroom) so that they are evaluated using the rubric (or assessment grid).

    +
    + + +
    +

    Details

    +

    The learnitgrid package allows to create and manage semi-automatically +rubrics to assess GitHub projects (R scripts, R Markdown or Quarto files). +Create directed projects where students have to complete documents and submit +them to GitHub (classroom) so that they are evaluated using the rubric +(or assessment grid).

    +
    +
    +

    Important functions

    + + +
    + +
    +

    Author

    +

    Maintainer: Philippe Grosjean phgrosjean@sciviews.org (ORCID)

    +

    Authors:

    + +
    + +
    + + +
    + + + + + + + + diff --git a/reference/link_to_www.html b/reference/link_to_www.html new file mode 100644 index 0000000..5e05bf8 --- /dev/null +++ b/reference/link_to_www.html @@ -0,0 +1,118 @@ + +Create symbolic links under www subdirectory or strip www subdirectory from the path — link_to_www • learnitgrid + + +
    +
    + + + +
    +
    +
    +

    Create symbolic links under www subdirectory or strip www subdirectory from the path

    + Source: R/utils.R + +
    + +
    +

    Symbolic links in the www subdirectory of the Shiny app are +required for the application to properly display html documents or images in +html tags.

    +
    + +
    + 
    link_to_www(path, link)
+
+www_relative(path)
    +
    + +
    +

    Arguments

    +
    path
    +

    The (absolute) path containing the documents.

    + + +
    link
    +

    The name to use for the symbolic link under the www subdirectory of the Shiny app.

    + +
    +
    +

    Value

    + + +

    TRUE if the symbolic link exists for link_to_www() or FALSE

    + + +

    otherwise. The modified path is returned bywww_relative()

    + + +
    +
    +

    Functions

    + +

    • www_relative(): Strip www/ in front of the relative paths for a Shiny app.

      • +
    + +
    + +
    + + +
    + + + + + + + + diff --git a/reference/populate_table.html b/reference/populate_table.html new file mode 100644 index 0000000..5b3de37 --- /dev/null +++ b/reference/populate_table.html @@ -0,0 +1,134 @@ + +Computes the content of a DT::datatable for a correction set — populate_table • learnitgrid + + +
    +
    + + + +
    +
    +
    +

    Computes the content of a DT::datatable for a correction set

    + Source: R/populate_table.R + +
    + +
    +

    The most important function for the learnitgrid Shiny app to fill in the +table according to selected items with a list of grids (or "all") or +according to a selected grid with a list of items (or "all")

    +
    + +
    + 
    populate_table(
+  items,
+  grids = "all",
+  context,
+  reorder = (length(items) == 1),
+  highlight = FALSE,
+  max_lines = 20L
+)
    +
    + +
    +

    Arguments

    +
    items
    +

    The items of the evaluation grid to display in the table, +usually either one item, or "all" for everything

    + + +
    grids
    +

    The evaluation grids to display, usually either "all" if only +one item, or one grid if "all" items

    + + +
    context
    +

    A context object as computed by create_context().

    + + +
    reorder
    +

    Should the rows in the table be reordered by similarities? +This is usually TRUE for a single items, or FALSE otherwise (and it is +computed as such by default).

    + + +
    highlight
    +

    Syntax highlighting for code (slow, thus FALSE by default)

    + + +
    max_lines
    +

    The maximum number of content lines that are displayed +(truncate very long contents).

    + +
    +
    +

    Value

    + + +

    A data frame with the content to be displayed in a DT::datatable object.

    +
    + +
    + +
    + + +
    + + + + + + + + diff --git a/sitemap.xml b/sitemap.xml new file mode 100644 index 0000000..f799a5b --- /dev/null +++ b/sitemap.xml @@ -0,0 +1,63 @@ + + + + https://learnitr.github.io/learnitgrid/404.html + + + https://learnitr.github.io/learnitgrid/CODE_OF_CONDUCT.html + + + https://learnitr.github.io/learnitgrid/LICENSE-text.html + + + https://learnitr.github.io/learnitgrid/LICENSE.html + + + https://learnitr.github.io/learnitgrid/TODO.html + + + https://learnitr.github.io/learnitgrid/articles/index.html + + + https://learnitr.github.io/learnitgrid/articles/learnitgrid.html + + + https://learnitr.github.io/learnitgrid/authors.html + + + https://learnitr.github.io/learnitgrid/index.html + + + https://learnitr.github.io/learnitgrid/news/index.html + + + https://learnitr.github.io/learnitgrid/reference/check_grids.html + + + https://learnitr.github.io/learnitgrid/reference/chunk_labels.html + + + https://learnitr.github.io/learnitgrid/reference/correct_rmd.html + + + https://learnitr.github.io/learnitgrid/reference/create_context.html + + + https://learnitr.github.io/learnitgrid/reference/dir_path_create.html + + + https://learnitr.github.io/learnitgrid/reference/get_git_stats.html + + + https://learnitr.github.io/learnitgrid/reference/index.html + + + https://learnitr.github.io/learnitgrid/reference/learnitgrid-package.html + + + https://learnitr.github.io/learnitgrid/reference/link_to_www.html + + + https://learnitr.github.io/learnitgrid/reference/populate_table.html + +