diff --git a/.github/workflows/unit-testing.Listeria.Kraken1.yml b/.github/workflows/unit-testing.Listeria.Kraken1.yml index 7423e36..26d5021 100644 --- a/.github/workflows/unit-testing.Listeria.Kraken1.yml +++ b/.github/workflows/unit-testing.Listeria.Kraken1.yml @@ -42,9 +42,9 @@ jobs: - name: install-edirect run: | sh -c "$(curl -fsSL https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/install-edirect.sh)" - echo $GITHUB_WORKSPACE/edirect >> $GITHUB_PATH + echo $HOME/edirect >> $GITHUB_PATH echo $GITHUB_WORKSPACE/Kalamari/bin >> $GITHUB_PATH - tree $GITHUB_WORKSPACE/edirect + tree $HOME/edirect - name: check-env run: echo "$PATH" - name: select for only Listeria