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higashi.Higashi_backend.Modules import error #36

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bio-xtt opened this issue May 12, 2023 · 5 comments
Open

higashi.Higashi_backend.Modules import error #36

bio-xtt opened this issue May 12, 2023 · 5 comments

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@bio-xtt
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bio-xtt commented May 12, 2023

Hi, I installed higashi in conda mode, and the following errors always occur when I use this tool for data analysis. How can I solve this problem?
Uploading 2023-05-12_21-59.png…
Uploading higashi.ipynb…

@ruochiz
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ruochiz commented May 13, 2023

I think the figure and notebook are not finished uploading... I cannot open them. The conda installation mode is a bit tricky here, could you try it with pip install instead? Thanks. I will look into the conda situation later

@XiongGZ
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XiongGZ commented Aug 12, 2023

Hi, I had the same problem when I run the tutorials/Lee et al (Higashi+Fast-Higashi).ipynb, and I try to reinstall the higashi with pip. However it didn't work.
Here is the version of fasthigashi and higashi
image
The error is:
image
What can I do to solve this problem?
Thanks

@XiongGZ
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XiongGZ commented Aug 12, 2023

When I try to overwrite the Process.py, another problem will occur
before
image
after
image

another problem is:
image
my zlib version is zlib 1.2.13 h166bdaf_4
maybe I should install the zlib 1.2.9? but I can't find this version using conda

@PeiKeGUO
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PeiKeGUO commented Jan 9, 2024

Hi, I had the same problem when I run the tutorials/Lee et al (Higashi+Fast-Higashi).ipynb, and I try to reinstall the higashi with pip. However it didn't work. Here is the version of fasthigashi and higashi image The error is: image What can I do to solve this problem? Thanks

你好,请问你解决这个ModuleNotFoundErro了吗,我也遇到这个问题了,我用的conda install -c ruochiz higashi安装的

@ruochiz
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ruochiz commented Jan 9, 2024

Could you try the git clone repo then pip install . method? The conda version is a bit out dated, I will need some time to recompile it.

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4 participants