Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

RuntimeError: received 0 items of ancdata #48

Open
PeiKeGUO opened this issue Mar 22, 2024 · 0 comments
Open

RuntimeError: received 0 items of ancdata #48

PeiKeGUO opened this issue Mar 22, 2024 · 0 comments

Comments

@PeiKeGUO
Copy link

Dear developers, I was running Ramani's code, and I replaced the data with my own. But I encountered the following error:

`[ Epoch 28 of 45 ]

  • (Train) bce: 0.2533, mse: 0.0000, acc: 95.492 %, pearson: 0.852, spearman: 0.609, elapse: 27.909 s
  • (Valid) bce: 0.2033, acc: 98.862 %,pearson: 0.956, spearman: 0.644,elapse: 0.089 s
    no improve: 1
    [ Epoch 29 of 45 ]
  • (Train) bce: 0.2529, mse: 0.0000, acc: 95.531 %, pearson: 0.854, spearman: 0.609, elapse: 26.552 s
  • (Valid) bce: 0.2068, acc: 98.737 %,pearson: 0.952, spearman: 0.643,elapse: 0.094 s
    no improve: 2
    [ Epoch 30 of 45 ]
  • (Train) bce: 0.2528, mse: 0.0000, acc: 95.534 %, pearson: 0.854, spearman: 0.609, elapse: 26.419 s
  • (Valid) bce: 0.2070, acc: 98.739 %,pearson: 0.952, spearman: 0.644,elapse: 0.086 s
    no improve: 3
    [ Epoch 31 of 45 ]
  • (Train) bce: 0.2528, mse: 0.0000, acc: 95.545 %, pearson: 0.854, spearman: 0.609, elapse: 27.653 s
  • (Valid) bce: 0.2084, acc: 98.711 %,pearson: 0.951, spearman: 0.643,elapse: 0.095 s
    • (Validation) : 10%|█ | 1/10 [00:08<01:12, 8.09s/it]concurrent.futures.process._RemoteTraceback:
      '''
      Traceback (most recent call last):
      File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/concurrent/futures/process.py", line 387, in wait_result_broken_or_wakeup
      result_item = result_reader.recv()
      File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/multiprocessing/connection.py", line 251, in recv
      return _ForkingPickler.loads(buf.getbuffer())
      File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/site-packages/torch/multiprocessing/reductions.py", line 355, in rebuild_storage_fd
      fd = df.detach()
      File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/multiprocessing/resource_sharer.py", line 58, in detach
      return reduction.recv_handle(conn)
      File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/multiprocessing/reduction.py", line 189, in recv_handle
      return recvfds(s, 1)[0]
      File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/multiprocessing/reduction.py", line 164, in recvfds
      raise RuntimeError('received %d items of ancdata' %
      RuntimeError: received 0 items of ancdata
      '''

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
File "/data02/home/scv9147/run/24.3.21-higashi_K562_HAP1_500K.py", line 17, in
higashi_model.train_for_imputation_nbr_0()
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/site-packages/higashi/Higashi_wrapper.py", line 1367, in train_for_imputation_nbr_0
self.train(
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/site-packages/higashi/Higashi_wrapper.py", line 1141, in train
valid_bce_loss, valid_accu, valid_auc1, valid_auc2, _, _ = self.eval_epoch(validation_data_generator)
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/site-packages/higashi/Higashi_wrapper.py", line 1005, in eval_epoch
batch_x, batch_y, batch_w, batch_chrom, batch_to_neighs, chroms_in_batch = p.result()
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/concurrent/futures/_base.py", line 439, in result
return self.__get_result()
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/concurrent/futures/_base.py", line 391, in __get_result
raise self._exception
concurrent.futures.process.BrokenProcessPool: A process in the process pool was terminated abruptly while the future was running or pending.`

How do I solve this problem?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant