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(Validation) : 10%|█ | 1/10 [00:08<01:12, 8.09s/it]concurrent.futures.process._RemoteTraceback:
'''
Traceback (most recent call last):
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/concurrent/futures/process.py", line 387, in wait_result_broken_or_wakeup
result_item = result_reader.recv()
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/multiprocessing/connection.py", line 251, in recv
return _ForkingPickler.loads(buf.getbuffer())
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/site-packages/torch/multiprocessing/reductions.py", line 355, in rebuild_storage_fd
fd = df.detach()
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/multiprocessing/resource_sharer.py", line 58, in detach
return reduction.recv_handle(conn)
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/multiprocessing/reduction.py", line 189, in recv_handle
return recvfds(s, 1)[0]
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/multiprocessing/reduction.py", line 164, in recvfds
raise RuntimeError('received %d items of ancdata' %
RuntimeError: received 0 items of ancdata '''
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/data02/home/scv9147/run/24.3.21-higashi_K562_HAP1_500K.py", line 17, in
higashi_model.train_for_imputation_nbr_0()
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/site-packages/higashi/Higashi_wrapper.py", line 1367, in train_for_imputation_nbr_0
self.train(
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/site-packages/higashi/Higashi_wrapper.py", line 1141, in train
valid_bce_loss, valid_accu, valid_auc1, valid_auc2, _, _ = self.eval_epoch(validation_data_generator)
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/site-packages/higashi/Higashi_wrapper.py", line 1005, in eval_epoch
batch_x, batch_y, batch_w, batch_chrom, batch_to_neighs, chroms_in_batch = p.result()
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/concurrent/futures/_base.py", line 439, in result
return self.__get_result()
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/concurrent/futures/_base.py", line 391, in __get_result
raise self._exception
concurrent.futures.process.BrokenProcessPool: A process in the process pool was terminated abruptly while the future was running or pending.`
How do I solve this problem?
The text was updated successfully, but these errors were encountered:
Dear developers, I was running Ramani's code, and I replaced the data with my own. But I encountered the following error:
`[ Epoch 28 of 45 ]
no improve: 1
[ Epoch 29 of 45 ]
no improve: 2
[ Epoch 30 of 45 ]
no improve: 3
[ Epoch 31 of 45 ]
'''
Traceback (most recent call last):
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/concurrent/futures/process.py", line 387, in wait_result_broken_or_wakeup
result_item = result_reader.recv()
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/multiprocessing/connection.py", line 251, in recv
return _ForkingPickler.loads(buf.getbuffer())
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/site-packages/torch/multiprocessing/reductions.py", line 355, in rebuild_storage_fd
fd = df.detach()
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/multiprocessing/resource_sharer.py", line 58, in detach
return reduction.recv_handle(conn)
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/multiprocessing/reduction.py", line 189, in recv_handle
return recvfds(s, 1)[0]
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/multiprocessing/reduction.py", line 164, in recvfds
raise RuntimeError('received %d items of ancdata' %
RuntimeError: received 0 items of ancdata
'''
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/data02/home/scv9147/run/24.3.21-higashi_K562_HAP1_500K.py", line 17, in
higashi_model.train_for_imputation_nbr_0()
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/site-packages/higashi/Higashi_wrapper.py", line 1367, in train_for_imputation_nbr_0
self.train(
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/site-packages/higashi/Higashi_wrapper.py", line 1141, in train
valid_bce_loss, valid_accu, valid_auc1, valid_auc2, _, _ = self.eval_epoch(validation_data_generator)
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/site-packages/higashi/Higashi_wrapper.py", line 1005, in eval_epoch
batch_x, batch_y, batch_w, batch_chrom, batch_to_neighs, chroms_in_batch = p.result()
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/concurrent/futures/_base.py", line 439, in result
return self.__get_result()
File "/data02/home/scv9147/run/miniconda3/envs/higashi/lib/python3.9/concurrent/futures/_base.py", line 391, in __get_result
raise self._exception
concurrent.futures.process.BrokenProcessPool: A process in the process pool was terminated abruptly while the future was running or pending.`
How do I solve this problem?
The text was updated successfully, but these errors were encountered: