Organisation of your github repo

All communication is via issues. Do not use email. Use @name to make sure the person for whom an issue is important gets a notification, or simply assign it.
Close issues when they are over. Split them, if they become to crowded.
Use the project board to get a good overview of your issues.

Most likely your data is too large to store on github, so store it elsewhere. If possible on some accesible place.

Of course a helpful README.md
Some must have folders are contained in two main sections.
Content
1. Thesis
  - Containing all Latex source files
2. Thesis Design
3. Related work 4. PDFs 5. Literature overview 6. How your work is positioned in the literature
Research
1. Exploratory_Data_Analysis
  - Sample data file for playing around and trying things out
  - Notebook(s) doing EDA on your data
  - Notebook doing all the data pre-processing
2. Experiments
  - Notebook(s) containing experiments with outcomes
  - Notebook(s) for hyperparameter tuning
  - Notebook(s) for setting up train/test if needed
3. Analysis
  - Basis for your result section.
  - Eg, notebook(s) with significance testing, error analysis, insightfull plots and tables

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