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Include R kernel for jupyter using IRkernel #43

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podpearson opened this issue Apr 12, 2019 · 3 comments
Open

Include R kernel for jupyter using IRkernel #43

podpearson opened this issue Apr 12, 2019 · 3 comments
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@podpearson
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I have recently used R kernel for Jupyter (https://github.com/IRkernel/IRkernel) which was straightforward to install and allows you to run R in jupyter notebooks just like you would use python. I intend to create a PR when I next need to use R. In the meantime, please shout if you have strong objections to this.

One thing I did realise when doing this is that R packages should be installed using conda, rather than R's own install.packages or other methods. See https://docs.anaconda.com/anaconda/packages/r-language-pkg-docs/. E.g. to install ape use conda install -c r r-ape.

@podpearson podpearson self-assigned this Apr 12, 2019
@alimanfoo
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Thanks @podpearson, no objections to a PR adding the necessary conda packages.

@alimanfoo
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Btw binder is currently configured to install from the conda-forge channel, but I don't know which channel is currently best to get R packages from. We might need a bit of care to ensure all R packages come from the correct channel, and packages are not getting pulled from a mix of different channels, which I know has caused problems in the past.

@leehart
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leehart commented Jun 10, 2024

Hi @podpearson . Just looking through old issues and wondering if this is still relevant? Or we can close as "not planned".

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