Integrating EGSEA plotSummary in Rmarkdown

[hariiyer16]

Hi Monther,
Thanks for your work on EGSEA. I think its a great tool for gene enrichment analyses, and started using it recently. I am following up on our email conversation regarding the following issue.
I want to use EGSEA in a pipeline that I run in Rmarkdown, wherein the output figures are generated in a html file (our a pdf file) report. When I use plotSummary, the plots are saved in the working directory instead of being printed in the html file. Is there a way such that plotSummary will print the plot to the open graphic device instead of saving the file. I tried leaving file.name​ empty, but by default the plot is saved in the current working directory.

It will be great to add this feature. Thanks.