You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
(function (go_id, Term, Ontology, Definition, ...)
. {
. new("GOTerms", GOID = go_id[1], Term = Term[1], Ontology = Ontology[1],
. Definition = Definition[1], ...)
. })(go_id..2 = c("GO:0032201", "GO:0032201", "GO:0032201"), Term = c("telomere maintenance via semi-conservative replication",
. "telomere maintenance via semi-conservative replication", "telomere maintenance via semi-conservative replication"
. ), Ontology = c("BP", "BP", "BP"), Definition = c("The process in which telomeric DNA is synthesized semi-conservatively by the conventional replication machinery and telomeric accessory factors as part of cell cycle DNA replication.",
. "The process in which telomeric DNA is synthesized semi-conservatively by the conventional replication machinery and telomeric accessory factors as part of cell cycle DNA replication.",
. "The process in which telomeric DNA is synthesized semi-conservatively by the conventional replication machinery and telomeric accessory factors as part of cell cycle DNA replication."
. ), Synonym = c("equal telomere replication", "telomeric fork progression",
. "telomeric replication fork progression"), Secondary = c(NA_character_,
. NA_character_, NA_character_))
Hello,
I'm trying to use your package but I don't know why it behaves in this way and I'm not able to perform ORA. Am I doing something wrong? Thank you.
Francesco
P.S. this is the code that I'm using:
gs.annot <- buildIdx(entrezIDs = orthologs_biomarkers_monkey_delta_entrez_human$entrezgene_human, species = "human",
gsdb.gsets = "all")
Error in initialize(value, ...): l'argomento "go_id" non è specificato e non ha un valore predefinito
Traceback:
. species = "human", gsdb.gsets = "all", msigdb.gsets = "none",
. kegg.exclude = c("Metabolism"))
. go.part = go.part, min.size = min.size)
. {
. new("GOTerms", GOID = go_id[1], Term = Term[1], Ontology = Ontology[1],
. Definition = Definition[1], ...)
. })(go_id..2 = c("GO:0032201", "GO:0032201", "GO:0032201"), Term = c("telomere maintenance via semi-conservative replication",
. "telomere maintenance via semi-conservative replication", "telomere maintenance via semi-conservative replication"
. ), Ontology = c("BP", "BP", "BP"), Definition = c("The process in which telomeric DNA is synthesized semi-conservatively by the conventional replication machinery and telomeric accessory factors as part of cell cycle DNA replication.",
. "The process in which telomeric DNA is synthesized semi-conservatively by the conventional replication machinery and telomeric accessory factors as part of cell cycle DNA replication.",
. "The process in which telomeric DNA is synthesized semi-conservatively by the conventional replication machinery and telomeric accessory factors as part of cell cycle DNA replication."
. ), Synonym = c("equal telomere replication", "telomeric fork progression",
. "telomeric replication fork progression"), Secondary = c(NA_character_,
. NA_character_, NA_character_))
. Definition = Definition[1], ...)
The text was updated successfully, but these errors were encountered: