diff --git a/repository.json b/repository.json index 418a008..ff2b913 100644 --- a/repository.json +++ b/repository.json @@ -1,3638 +1,3638 @@ { "BilbyCustomFunctions_Reduction.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "\n\n###########\n\n\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "DECON": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "DECON/DeconApplyCorrections.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "DECON/DeconCalculateDerivatives.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "DECON/DeconD4Correct.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "DECON/DeconD4LoadSofQ.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "DECON/DeconD4Moments.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "DECON/DeconD4Result.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "DECON/DeconD4SofQ.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "DECON/Decon_manual.pdf": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "DECON/Muscat": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "DECON/Muscat/MuscatElasticReactor.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "DECON/Muscat/MuscatReactor.pdf": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "DECON/Muscat/Rb_Q.nxs": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "EnergyWindowScan.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Mantid Repository : https://github.com/mantidproject/mantid\n\n\nCopyright © 2018 ISIS Rutherford Appleton Laboratory UKRI,\n\n NScD Oak Ridge National Laboratory, European Spallation Source\n\n & Institut Laue - Langevin\n\nSPDX - License - Identifier: GPL - 3.0 +\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "IndirectQuickRun.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "README.md": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Script Repository\n=================\n\nThis is a public repository of user scripts for Mantid.\n\nDirectory Structure\n===================\n\nIn order to try to keep the content in the repository navigable over time please\nfollow the suggested directory structure:\n\n* technique/instrument- scripts specific to an instrument\n e.g.sans/loq\n* technique/facility - scripts specific to a facility, but common to several instruments at that facility\n e.g.reflectometry/ornl\n* general/usage - scripts applicable to all\n e.g.general/events\n* user/name - for storing personal, but still shared scripts \n e.g.user/ndraper\n \n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/MantidPlot_scripts": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/MantidPlot_scripts/AnalyzeOneRun.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Initial analysis to find peaks and to obtain lattice constants and UB matrix.\n\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/NIST_cross-sections.dat": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/ReduceDictionary.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "\n\n File: ReduceDictionary.py\n\n\n\n This module contains some top level methods for constructing a python\n\n dictionary with the parameter values needed by the ReduceOneSCD_Run.py\n\n and ReduceSCD_Parallel.pay scripts.\n\n\n\n This method will load the dictionary of parameter name, value pairs from\n\n the specified configuration file. The key words None, True and False are\n\n converted from a string to the corresponding value. Also, the list of\n\n run numbers is built up from possibly multiple lines with the key \"run_nums\".\n\n The run numbers themselves may be specified as a comma separated list of\n\n individual run numbers, or ranges specified with a colon separator.\n\n\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/ReduceSCD.config": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/ReduceSCD_OneRun.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "File: ReduceOneSCD_Run.py\n\n\nVersion 2.0, modified to work with Mantid's new python interface.\n\n\nThis script will reduce one SCD run. The configuration file name and\n\nthe run to be processed must be specified as the first two command line\n\nparameters. This script is intended to be run in parallel using the\n\nReduceSCD_Parallel.py script, after this script and configuration file has\n\nbeen tested to work properly for one run. This script will load, find peaks,\n\nindex and integrate either found or predicted peaks for the specified run.\n\nEither sphere integration or the Mantid PeakIntegration algorithms are\n\ncurrently supported, but it may be updated to support other integration\n\nmethods. Users should make a directory to hold the output of this script,\n\nand must specify that output directory in the configuration file that\n\nprovides the parameters to this script.\n\n\nNOTE: All of the parameters that the user must specify are listed with\n\ninstructive comments in the sample configuration file: ReduceSCD.config.\n\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/ReduceSCD_Parallel.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "File: ReduceSCD_Parallel.py\n\n\nVersion 2.0, modified to work with Mantid's new python interface.\n\n\nThis script will run multiple instances of the script ReduceSCD_OneRun.py\n\nin parallel, using either local processes or a slurm partition. After\n\nusing the ReduceSCD_OneRun script to find, index and integrate peaks from\n\nmultiple runs, this script merges the integrated peaks files and re-indexes\n\nthem in a consistent way. If desired, the indexing can also be changed to a\n\nspecified conventional cell.\n\nMany intermediate files are generated and saved, so all output is written\n\nto a specified output_directory. This output directory must be created\n\nbefore running this script, and must be specified in the configuration file.\n\nThe user should first make sure that all parameters are set properly in\n\nthe configuration file for the ReduceSCD_OneRun.py script, and that that\n\nscript will properly reduce one scd run. Once a single run can be properly\n\nreduced, set the additional parameters in the configuration file that specify\n\nhow the the list of runs will be processed in parallel.\n\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/SCDcalib_plot.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Plot data in SCDcalib.log file from ISAW SCD Calibration.\nA. J. Schultz, September 2015", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/anvred3.inp": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/anvred3.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "--------------------------------------------------------------------\n\n anvred3.py\n\n\n\n\n\n Includes the option to perform a spherical absorption correction\n\n or calculate direction cosines for a polyhedral correction\n\n using the gaussian.f program.\n\n\n\n Includes a Tkinter gui interface.\n\n\n\n A. J. Schultz, May 2014\n\n\n\n--------------------------------------------------------------------\n\n anvred2x.py\n\n\n\n Does not run from Isaw. User input read from anvred2x.inp file.\n\n A. J. Schultz, February 2012\n\n--------------------------------------------------------------------\n\n\n\n Data reduction program:\n\n Input is raw integrated intensities.\n\n Output is relative Fsq's.\n\n\n\n Jython version:\n\n A. J. Schultz, started December 2009\n\n\n\n anvred_py.py\n\n Each spectrum is a separate file. The spectra files are created\n\n by \"TOPAZ_spectrum_multiple_banks.iss\".\n\n\n\n anvred2.py:\n\n This version reads one spectrum file containing spectra for\n\n each detector. The spectra are created by \"TOPAZ_spectrum.py\".\n\n\n\n Modfications by Xiaoping Wang, April 2011\n\n Added Selection of neutron wavelengths limits wlMin, wlMax\n\n Omit zero intensity peaks in integrate file XP Wang 03/21/2011\n\n Changed to >=0 and used absolute value for minium I/sing(I) = 0 XP Wang 02/24/2011\n\n Added detector scale factors for vanadium/niobium spectrum XP Wang 09/24/2013\n\n\n\n\n\n \n\n Comments from Fortran source:\n\n C************************** ANVRED ******************************\n\n C\n\n C ARGONNE NATIONAL LABORATORY VARIABLE WAVELENGTH DATA REDUCTION PROGRAM\n\n C\n\n C\t\tMajor contributions from:\n\n C\t\t\tP. C. W. Leung\n\n C\t\t\tA. J. Schultz\n\n C\t\t\tR. G. Teller\n\n C\t\t\tL. R. Falvello\n\n C\n\n C The data output by this program are corrected for variations in\n\n C spectral distribution, variations in detector efficiency across the\n\n C face of the detector, and the pertinent geometric factors such as\n\n C (SIN(THETA))**2 and LAMBDA**4.\n\n C\n\n !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n\n !\tLinux version:\tA. Schultz January, 2003 !\n\n !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n\n\n\n !\tVersion 4:\t\tA. Schultz\t\tJune, 2003\n\n !\t\t1. Process data from two detectors\n\n !\t\t2. Does not use an x-file.\n\n !\t\t3. Gets MONCNT from integrate file. If zero, sets CMONX = 1.0.\n\n !\t\t4. Corrected ALPHAP for calculation of SPECT1.\n\n\n\n !\tVersion 5:\t\tA. Schultz\t\tJuly, 2003\n\n !\t\tThis version outputs a expnam.hkl file which can be input\n\n !\t\tinto SHELX with HKL 2.\n\n !\tVersion 5a:\n\n !\t\tCleaned-up and removed a lot of unused code.\n\n !\t\tAdded a test for dmin.\n\n !\n\n !\tVersion 6:\t\tL. Falvello\t\tJanuary, 2004\n\n !\t\tPolyhedral absorption correction with two detectors.\n\n !\n\n !\tVersion 7:\t\tA. Schultz\t\t2007\n\n !\t\tUse spectrum obtained from each SCD detector\n\n !\n\n !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n\n !\tANVRED_SNS:\t\tA. Schultz\t\t2008 !\n\n !\t\tProcess SNS data. !\n\n !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n\n !\tANVRED_SNS_v2:\t\tA. Schultz\t\tJune, 2008\n\n !\t\tNew spherical absorption correction. Removed all\n\n !\t\tof the old correction code.\n\n !\tANVRED_SNS-v2.1: read detector parameters from integrate file.\n\n !\tANVRED_SNS-v2.2: get filename for spectrum file.\n\n ! ANVRED_SNS-v2.3: everything included in one file. 8/17/2008\n\n ! anvredSNS_2.4: made compatible with gfortran including removal\n\n ! of FREIN3 and READ133. 10/8/2008\n\n !\tanvredSNS_2.5: the datacom_SNS.inc file is no longer used. Cleaned\n\n !\t\t\tup the code using ftnchek. 10/13/08\n\n !\tanvredSNS_2.6: assign a common scale factor for each\n\n !\t\t\tcrystal setting, or for each detector. 1/29/09\n\n !\n\n !\t4/13/09\tNumber of possible spectra increased from 2 to 100.\n\n !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/concatenate.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Combine integrate files.\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/latcon.inp": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/latcon.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "latcon.py\n\nProgram to refine just the unit cell lattice constants but not the \n\norientation matrix.\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/lin_abs_coef2.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/stats_vs_radius.config": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/stats_vs_radius.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "File: stats_vs_radius.py\n\n\nThis script will vary the spherical integration radius and output statistics.\n\n\nNOTE: All of the parameters that the user must specify are listed with \n\ninstructive comments in the sample configuration file: ReduceSCD.config.\n\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/stats_vs_time.config": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "SingleCrystal/stats_vs_time.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "File: stats_vs_time.py\n\n\nThis script will vary the elapsed time and output statistics.\n\n\nNOTE: All of the parameters that the user must specify are listed with \n\ninstructive comments in the sample configuration file: ReduceSCD.config.\n\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "contextuality": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "contextuality/journal": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "contextuality/journal/__init__.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "contextuality/journal/journal.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "diffraction": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "scriptrepository\n================\n\nThis is a public repository of users scripts for Mantid\n\nDirectory structure\n================\n\nIn order to try to keep the content in the repository navigable over time please follow the suggested directory structure\n\n* technique/instrument\t-\tScripts specific to an instrument\n e.g.sans/loq\n* technique/facility\t-\tscripts specific to a facility, but common to several instruments at that facility\n e.g.reflectometry/ornl\t\n* general/usage -\tscripts applicable to all\n e.g.general/events\n* user/name -\tfor storing personal, but still shared scripts \n e.g.user/ndraper\n \n", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "diffraction/GGG_UB_for_skew.zip": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "diffraction/README.md": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "scriptrepository\n================\n\nThis is a public repository of users scripts for Mantid\n\nDirectory structure\n================\n\nIn order to try to keep the content in the repository navigable over time please follow the suggested directory structure\n\n* technique/instrument\t-\tScripts specific to an instrument\n e.g.sans/loq\n* technique/facility\t-\tscripts specific to a facility, but common to several instruments at that facility\n e.g.reflectometry/ornl\t\n* general/usage -\tscripts applicable to all\n e.g.general/events\n* user/name -\tfor storing personal, but still shared scripts \n e.g.user/ndraper\n \n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "diffraction/WISH": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "diffraction/WISH/bragg-detect": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "diffraction/WISH/bragg-detect/__init__.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "diffraction/WISH/bragg-detect/bragg_utils.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "diffraction/WISH/bragg-detect/cnn": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Bragg Peaks detection using a pre-trained Faster RCNN deep neural network \n================\n\nInorder to use the pre-trained Faster RCNN model inside mantid using an IDAaaS instance, below steps are required.\n\n* Launch an IDAaaS instance with GPUs from WISH > Wish Single Crystal GPU Advanced\n* Launch Mantid workbench nightly from Applications->Software->Mantid->Mantid Workbench Nightly \n* Download `scriptrepository\\diffraction\\WISH` directory from mantid's script repository as instructed here https://docs.mantidproject.org/nightly/workbench/scriptrepository.html\n* Check whether `\\diffraction\\WISH` path is listed under `Python Script Directories` tab from `File->Manage User Directories` of Mantid workbench.\n* Below is an example code snippet to test the code. It will create a peaks workspace with the inferred peaks from the cnn and will do a peak filtering using the q_tol provided using `BaseSX.remove_duplicate_peaks_by_qlab`.\n```python\nfrom cnn.BraggDetectCNN import BraggDetectCNN\nmodel_weights = r'/mnt/ceph/auxiliary/wish/BraggDetect_FasterRCNN_Resnet50_Weights_v1.pt'\ncnn_peaks_detector = BraggDetectCNN(model_weights_path=model_weights, batch_size=64)\ncnn_peaks_detector.find_bragg_peaks(workspace='WISH00042730', output_ws_name=\"CNN_Peaks\", conf_threshold=0.0, q_tol=0.05)\n```\n* If the above import is not working, check whether the `\\diffraction\\WISH` path is listed under `Python Script Directories` tab from `File->Manage User Directories`.\n", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "diffraction/WISH/bragg-detect/cnn/BraggDetectCNN.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "diffraction/WISH/bragg-detect/cnn/README.md": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Bragg Peaks detection using a pre-trained Faster RCNN deep neural network \n================\n\nInorder to use the pre-trained Faster RCNN model inside mantid using an IDAaaS instance, below steps are required.\n\n* Launch an IDAaaS instance with GPUs from WISH > Wish Single Crystal GPU Advanced\n* Launch Mantid workbench nightly from Applications->Software->Mantid->Mantid Workbench Nightly \n* Download `scriptrepository\\diffraction\\WISH` directory from mantid's script repository as instructed here https://docs.mantidproject.org/nightly/workbench/scriptrepository.html\n* Check whether `\\diffraction\\WISH` path is listed under `Python Script Directories` tab from `File->Manage User Directories` of Mantid workbench.\n* Below is an example code snippet to test the code. It will create a peaks workspace with the inferred peaks from the cnn and will do a peak filtering using the q_tol provided using `BaseSX.remove_duplicate_peaks_by_qlab`.\n```python\nfrom cnn.BraggDetectCNN import BraggDetectCNN\nmodel_weights = r'/mnt/ceph/auxiliary/wish/BraggDetect_FasterRCNN_Resnet50_Weights_v1.pt'\ncnn_peaks_detector = BraggDetectCNN(model_weights_path=model_weights, batch_size=64)\ncnn_peaks_detector.find_bragg_peaks(workspace='WISH00042730', output_ws_name=\"CNN_Peaks\", conf_threshold=0.0, q_tol=0.05)\n```\n* If the above import is not working, check whether the `\\diffraction\\WISH` path is listed under `Python Script Directories` tab from `File->Manage User Directories`.\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "diffraction/WISH/bragg-detect/cnn/WISHDataSets.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "diffraction/WISH/bragg-detect/cnn/__init__.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "diffraction/WISH/bragg-detect/cnn/requirements.txt": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "diffraction/WISH/bragg-detect/process_input_and_output_WISH_ML_peak_finding.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "functions to process data to use as ML input\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "diffraction/WISH_reduction_class_v4.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "\n\n for peak finding\n\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "diffraction/sxd_bk2bk_exp_coef.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "import mantid algorithms, numpy and matplotlib\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "scriptrepository\n================\n\nThis is a public repository of users scripts for Mantid\n\nDirectory structure\n================\n\nIn order to try to keep the content in the repository navigable over time please follow the suggested directory structure\n\n* technique/instrument\t-\tScripts specific to an instrument\n e.g.sans/loq\n* technique/facility\t-\tscripts specific to a facility, but common to several instruments at that facility\n e.g.reflectometry/ornl\t\n* general/usage -\tscripts applicable to all\n e.g.general/events\n* user/name -\tfor storing personal, but still shared scripts \n e.g.user/ndraper\n \n", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/HET": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/HET/HETReduction.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Sample HET reduction scrip ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/CrystalAlignment": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/CrystalAlignment/Check_alignement.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Load single crystl white beam data from MERLIN - Sr3 Fe2 O7 sample\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/DG_monovan.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "=======================================================\n\n\n MONO VANADIUM REDUCTION SCRIPT\n\n JRS 21/6/23\n\n\n Reads mono vanadium run, corrects for backgound,\n\n normalises to a White vanadium run, and finds the\n\n absolute normalisation factor for each Ei. These\n\n are saved to an assci file, 'MV_.txt'\n\n\n Optionally takes account of the vanadium DW factor.\n\n\n=======================================================\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/DG_reduction.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "=======================================================\n\n\n EXCITATIONS INSTRUMENTS REDUCTION SCRIPT\n\n JRS & MDL 3/7/23\n\n\n Reads sample run(s), corrects for backgound,\n\n normalises to a white vanadium run, and the\n\n absolute normalisation factor for each Ei (if MV\n\n file is specified).\n\n - Masks bad detectors with hard mask only.\n\n - Converts time-of-flight to energy transfer\n\n - performs Q-rebinning for QENS data ('_red.nxs' format)\n\n - Outputs .nxspe, .nxs or _red.nxs files\n\n\n=======================================================\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/DG_whitevan.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "=======================================================\n\n\n WHITE VAN REDUCTION SCRIPT\n\n JRS 26/4/23\n\n\n Reads white van run, subtracts empty, and\n\n writes out white vanadium integrals to an\n\n ascii file for use with DG_reduction.py\n\n\n No mask is employed at this stage\n\n\n=======================================================\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/DgFuncs.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "uses the new api all input workpsaces are expected to have |Q| along X and Energy Transfer along Y\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/PySlice.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "from utils import *\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/PySlice2.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "from DirectEnergyConversion import *\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/PySliceUI2.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Form implementation generated from reading ui file 'PysliceUi_2.ui'\n\n\nCreated: Thu Nov 21 12:01:18 2013\n\n by: PyQt4 UI code generator 4.10\n\n\nWARNING! All changes made in this file will be lost!\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/PysliceGui.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/PysliceUI.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Form implementation generated from reading ui file '/Users/jon/QtSDK/test2.ui'\n\n\nCreated: Mon May 28 21:37:27 2012\n\n by: PyQt4 UI code generator 4.9.1\n\n\nWARNING! All changes made in this file will be lost!\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/PysliceUI.ui": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/PysliceUI_2.ui": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/ScanJaws.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "\n\n select an area around it and \"Apply and Save\" \n\nace, which is called below.\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/autoEi.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "takes wkspin as string of run number \n\nreturns ei, as value and rebin parameners as string\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/autoreduce.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Crab information from autoreduction call\n\n###########################################\n\nfirst argument is full path of the data file \n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/c2te_pyAlg.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/ipyNotebookHelpers.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "(NEW!) To communicate with Plotly's server, sign in with credentials file\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/peakdet.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/qtiGenie.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "try:\n\n import nxs\n\nexcept ImportError:\n\n pass\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/test.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/utils.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "SVN Info: The variables below will only get subsituted at svn checkout if\n the repository is configured for variable subsitution. \n\n $Id$\n $HeadURL$\n|=============================================================================|=======| \n1 80 ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/qtiGenie/yscale.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/ISIS/reduction_utils.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "========================================================\n\n General utility functions\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET/LETReduction_2018_2Performance.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Sample LET reduction script ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET/LETReduction_2018_sample.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Sample LET reduction script ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET/LETReduction_2019_1.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Sample LET reduction script ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET/LETReduction_2020abs_sample.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET/LETReduction_FilterPulses.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Sample LET reduction script ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET/LETReduction_Sample.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Sample LET reduction script ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET/PLET_quartz.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "This scripts reads reduced One2One .nxspe files of a sequence of NSF/SF \n\nquartz calibration runs, for a sequence of LET energy reps, and uses the\n\nout-of-plane path length dependece of the polarization efficency of the He3 cell\n\nto calculate the Polarizer/Flipper efficency - and the \"average\" cell polarization\n\nSeems to work best when using quartz runs over a short time (not too much \n\nvariation in cell P and T \n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET/PLET_reduction_template.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "This script reads reduced One2One .nxspe files and corrects / combines the data.\n\nInput files should be a sequence of NSF and SF runs using only one spin-filter\n\ndata output as rings-mapped .nxspe files\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET/PolCorr.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET/RS_let_reduction.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "=======================================================\n\n\n SAMPLE REDUCTION SCRIPT\n\n JRS 19/2/22\n\n\n Reads sample run, corrects for backgound,\n\n normalises to a White vanadium run, and the\n\n absolute normalisation factor for each Ei (if MV\n\n file is specified). Outputs .nxspe file\n\n\n=======================================================\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET/RS_monovan.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "=======================================================\n\n\n MONO VANADIUM REDUCTION SCRIPT\n\n JRS 19/2/22\n\n\n Reads mono vanadium run, corrects for backgound,\n\n normalises to a White vanadium run, and finds the\n\n absolute normalisation factor for each Ei. These\n\n are save to an assci file, 'MV_.txt'\n\n\n Optionally takes account of the vanadium DW factor.\n\n\n=======================================================\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET/RS_whitevan.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "import mantid algorithms, numpy and matplotlib\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET/ReductionWrapper_withPerformance.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Mantid Repository : https://github.com/mantidproject/mantid\n\n\nCopyright © 2018 ISIS Rutherford Appleton Laboratory UKRI,\n\n NScD Oak Ridge National Laboratory, European Spallation Source\n\n & Institut Laue - Langevin\n\nSPDX - License - Identifier: GPL - 3.0 +\n\nylint: disable=invalid-name\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET/USER_Files_description.xml": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET/absolute_sample_script_rebinning2014.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "LET TRANSIENT REDUCTION SCRIPT MARCH 2014;", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET/iliad_example_abs.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "The sample script for LET absolute units reduction", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/LET/mulpy_rep.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "from mantid.simpleapi import *\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MAPS": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MAPS/MAPSReduction.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Sample MAPS reduction script ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MAPS/MAPSReduction_RMBG_Sample.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MAPS/MAPSReduction_Sample.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Sample MAPS reduction script ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MAPS/MAPSReduction_SampleAbs.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Sample MAPS reduction script ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MAPS/PyChopMAPS_CalibWB.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MAPS/PyChopMAPS_CalibWB_OldModerator.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MAPS/USER_Files_description.xml": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MAPS/example_pychop_script_maps.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Example script for using PyChop\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MAPS/template_maps.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "=========================================================================================================================================\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/DG_reduction.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "=======================================================\n\n\n EXCITATIONS INSTRUMENTS REDUCTION SCRIPT\n\n JRS & MDL 3/7/23\n\n\n Reads sample run(s), corrects for backgound,\n\n normalises to a white vanadium run, and the\n\n absolute normalisation factor for each Ei (if MV\n\n file is specified).\n\n - Masks bad detectors with hard mask only.\n\n - Converts time-of-flight to energy transfer\n\n - performs Q-rebinning for QENS data ('_red.nxs' format)\n\n - Outputs .nxspe, .nxs or _red.nxs files\n\n\n=======================================================\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MARIReduction_Sample.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Sample MARI reduction script ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MARIReduction_SampleAbs.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Sample MARI reduction script ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MARI_2013.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "det_cal_file must be specified if the reduction sends out put to a workpsace\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MapFiles": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MapFiles/mari_121_cor.map": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MapFiles/mari_mask2015.msk": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MapFiles/mari_res.map": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MapFiles/mari_res2012.map": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MapFiles/mari_res2013.map": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MapFiles/mari_vert_cor.map": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/Mar2015_Short.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MariChop": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MariChop/MARIChopGUI.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "from mantidplotpy import *\n\nimport dgreduce\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MariChop/MARIChopUI.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Form implementation generated from reading ui file '/Users/jon/QtSDK/pychopui.ui'\n\n\nCreated: Mon May 28 23:37:52 2012\n\n by: PyQt4 UI code generator 4.9.1\n\n\nWARNING! All changes made in this file will be lost!\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MariChop/MariChop.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MaskFiles": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MaskFiles/cryomagnet_hard.msk": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MaskFiles/m11001.msk": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MaskFiles/mar11001.msk": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MaskFiles/mar11015.msk": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MaskFiles/mari_mask2013.msk": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MaskFiles/mari_mask2014.msk": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MaskFiles/mari_mask2015.msk": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MaskFiles/mari_mask2015_3.msk": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MaskFiles/mari_mask2016_1.msk": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/MaskFiles/mari_mask2023_2.xml": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/PyChopMARI_CalibWB.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/USER_Files_description.xml": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/example_pychop_script_mari.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Example script for using PyChop\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/gen_mask_mari.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/iliad_python.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/mari.cal": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/mari_mask.xml": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/template_mari.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Run number and Ei\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MARI/template_mari_dos.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "START EDITING HERE\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/Iiad_event_autoreduce.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "this is the user input section\n\n###########################################\n\nwhere to save results (overwrites specified in Mantid, data search directories, if you want to use those one, comment two lines below here)\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/MERLINReduction_2016_4.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Sample MER reduction script ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/MERLINReduction_2018_2WithPerformance.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Sample MER reduction script ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/MERLINReduction_Sample.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Sample MER reduction script ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/MERLINReduction_SampleAbs.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Sample MER reduction script ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/PyChopMERLIN_CalibWB.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/USER_Files_description.xml": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/adr_cycle2013_3.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "sample Direct inelastic reduction for MERLIN performed in absolute units", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/calibration": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/calibration/adjust_det_new.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/calibration/adjustdet.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "import mantid algorithms\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/calibration/create_MERInst_Files.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/calibration/tube_calib_new.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "script to calibrate the detector tubes on Merlin\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/calibration/tubecalib.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "import mantid algorithms\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/example_pychop_script_merlin.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Example script for using PyChop\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/iliad_merlin.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "set up advanced and main properties\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/iliad_merlin_eventmode.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "MERLIN TRANSIENT REDUCTION SCRIPT MARCH 2014;", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/instrumentfiles": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/instrumentfiles/MER23698.msk": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/instrumentfiles/rings_143.map": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/instrumentfiles/rings_143.phx": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/mantid_iliad_abs_August2014.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "The sample script for MERLIN absolute units reduction. Copied from LET system tests. ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/mantid_iliad_abs_sample.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "The sample script for MERLIN absolute units reduction. \nShould be used for non_abs units too by setting MonoVanRun number to None\nFile copied from current (31/07.2014) Mantid System tests for LET and modified with MERLIN settings", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/MERLIN/template_merlin.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "reload(iliad_merlin)\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/README.md": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "scriptrepository\n================\n\nThis is a public repository of users scripts for Mantid\n\nDirectory structure\n================\n\nIn order to try to keep the content in the repository navigable over time please follow the suggested directory structure\n\n* technique/instrument\t-\tScripts specific to an instrument\n e.g.sans/loq\n* technique/facility\t-\tscripts specific to a facility, but common to several instruments at that facility\n e.g.reflectometry/ornl\t\n* general/usage -\tscripts applicable to all\n e.g.general/events\n* user/name -\tfor storing personal, but still shared scripts \n e.g.user/ndraper\n \n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "The scripts in this folder are in use (in some form) at SNS direct geometry inelastic instruments (ARCS, CNCS, HYSPEC, SEQUOIA)\n\nSripts to deal with sample logs and/or experiment logging:\n\nScripts that split data: \n new_scan.py - Updated version of rocking curve scan.py, using FilterEvents\n powderTdep_OP.py - Powder line intensity - temperature dependence\n reduce_mult_T.py - Reduce temperature scan. Going as far in events as possible, split, then extract useful information\n scan.py - rocking scan using continuous rotations\n Temp_plot_w.py - temperature scan on a peak using a mask\n T_scan.py - Quick temperature scan\n WB_Tdep.pyTemperature dependence of scattering intensity between Qmin,Qmax\n\nScripts to do some reduction/analysis:\n AddAndReduce.py - Simple script to add runs together, reduce using DGSReduction, and save to NXSPE format.\n Gd.py - Compact script to reduce Gd data to MD. Used for generating images for releases. Heavy use of workspace groups\n reduce_from_autoreduce_script.py - Reduction including generation of an experiment log \n reducenoguess.py - Simplified version of reduction using DGSReduction algorithm\n sum_split_plot_slice.py - continuous rotation to a 2D slice in SliceViewer\n Tdep50meV.py - Plot temperature dependence for data in a set of runs\n whitebeampeaks.py - gets UB from a white beam run, ignore those from Aluminum\n\nScripts to do some postprocessing:\n groupNxspe.py - Reduce file size of NXSPE files by grouping pixels togeter. \n load_n_plot.py - Quicly look at powder data in NXSPE files\n merge.py - Merge all MD nexus files in a folder\n writeMDhisto.py - Saves an md histo workspace with wname (2D slice from SliceViewer) into an ascii file\n\nOther: \n average_Ei_T0.py - Print incident energy and t0. Useful to check statistics of monitors in individual runs.\n fixDASLogs.py - function to change initial time for logs to coincide with the first proton pulse\n generate_string_base.py - Generate a list of runs where some log values obey certain criteria. Input can be from log.py \n log.py - Quicly check logs for multiple runs \n make_d_spacing.py - Convert to runs (on Bragg peaks) to d spacing. Use instrument view to select peaks, then the peaks workspace can be used to calculate UB matrix (print_u_v_vectors.py)\n MaskBTP.py - Mask banks, tubes, and pixels on ARCS/SEQUOIA/CNCS/HYSPEC \n print u_v_vectors.py - print u and v vectors for mslice/horace. Use in conjunction with make_d_spacing.py\n testtib.py - Test if time independent background range is OK. Uses MantidPlot plotting\n tof_plot_make.py - Make some plots using matplotlib\n Vec_move.py - Routines used to move packs\n\n\n", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/AddAndReduce.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Simple script to add runs together, reduce using DGSReduction, and save to NXSPE format.\nIt assumes that the preprocessed vanadium for normalization was saved as van.nx5", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/Gd.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Compact script to reduce Gd data to MD. Used for generating images for releases", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/MaskBTP.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Mask banks, tubes, and pixels on ARCS/SEQUOIA/CNCS/HYSPEC ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/README.txt": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "The scripts in this folder are in use (in some form) at SNS direct geometry inelastic instruments (ARCS, CNCS, HYSPEC, SEQUOIA)\n\nSripts to deal with sample logs and/or experiment logging:\n\nScripts that split data: \n new_scan.py - Updated version of rocking curve scan.py, using FilterEvents\n powderTdep_OP.py - Powder line intensity - temperature dependence\n reduce_mult_T.py - Reduce temperature scan. Going as far in events as possible, split, then extract useful information\n scan.py - rocking scan using continuous rotations\n Temp_plot_w.py - temperature scan on a peak using a mask\n T_scan.py - Quick temperature scan\n WB_Tdep.pyTemperature dependence of scattering intensity between Qmin,Qmax\n\nScripts to do some reduction/analysis:\n AddAndReduce.py - Simple script to add runs together, reduce using DGSReduction, and save to NXSPE format.\n Gd.py - Compact script to reduce Gd data to MD. Used for generating images for releases. Heavy use of workspace groups\n reduce_from_autoreduce_script.py - Reduction including generation of an experiment log \n reducenoguess.py - Simplified version of reduction using DGSReduction algorithm\n sum_split_plot_slice.py - continuous rotation to a 2D slice in SliceViewer\n Tdep50meV.py - Plot temperature dependence for data in a set of runs\n whitebeampeaks.py - gets UB from a white beam run, ignore those from Aluminum\n\nScripts to do some postprocessing:\n groupNxspe.py - Reduce file size of NXSPE files by grouping pixels togeter. \n load_n_plot.py - Quicly look at powder data in NXSPE files\n merge.py - Merge all MD nexus files in a folder\n writeMDhisto.py - Saves an md histo workspace with wname (2D slice from SliceViewer) into an ascii file\n\nOther: \n average_Ei_T0.py - Print incident energy and t0. Useful to check statistics of monitors in individual runs.\n fixDASLogs.py - function to change initial time for logs to coincide with the first proton pulse\n generate_string_base.py - Generate a list of runs where some log values obey certain criteria. Input can be from log.py \n log.py - Quicly check logs for multiple runs \n make_d_spacing.py - Convert to runs (on Bragg peaks) to d spacing. Use instrument view to select peaks, then the peaks workspace can be used to calculate UB matrix (print_u_v_vectors.py)\n MaskBTP.py - Mask banks, tubes, and pixels on ARCS/SEQUOIA/CNCS/HYSPEC \n print u_v_vectors.py - print u and v vectors for mslice/horace. Use in conjunction with make_d_spacing.py\n testtib.py - Test if time independent background range is OK. Uses MantidPlot plotting\n tof_plot_make.py - Make some plots using matplotlib\n Vec_move.py - Routines used to move packs\n\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/T_scan.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Quick temperature scan", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/Tdep50meV.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Plot temperature dependence for data in a set of runs", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/Temp_plot_w.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Temperature scan on a peak, using a mask", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/Vec_move.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/WB_Tdep.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Temperature dependence of scattering intensity between Qmin,Qmax. Detectors are groupped 16x4, the groups belonging to data/background are selected below", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/average_Ei_T0.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/fixDASLogs.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "function to change initial time for logs to coincide with the first proton pulse", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/generate_string_base.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Generate a list of runs where some log values obey certain criteria. Input can be from log.py ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/groupNxspe.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/load_n_plot.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/log.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Quicly check logs for multiple runs", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/make_d_spacing.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Convert to runs (on Bragg peaks) to d spacing. Use instrument view to select peaks, then the peaks workspace can be used to calculate UB matrix (print_u_v_vectors.py)", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/merge.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Merge all MD nexus files in a folder", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/new_scan.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Updated version of rocking curve scan.py, using FilterEvents", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/powderTdep_OP.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Powder line intensity - temperature dependence", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/print_u_v_vector.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "print u and v vectors for mslice/horace. Use in conjunction with make_d_spacing.py", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/reduce_from_autoreduce_script.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/reduce_mult_T.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/reducenoguess.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Simplified version of reduction using DGSReduction algorithm", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/scan.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Rocking scan (+ and - directions)", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/sum_split_plot_slice.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Simple script for continuous rotations", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/testtib.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Test if time independent background range is OK\nNote - runs in MantidPlot\nNote - uses pdftk to concatenate pdf files", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/tof_plot_make.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Make some plots using matplotlib", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/whitebeampeaks.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Load a white beam data, convert to MD, find peaks, remove those belonging to Al, and index the rest", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "direct_inelastic/SNS/writeMDhisto.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Saves an md histo workspace with wname (2D slice from SliceViewer) into an ascii file", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "general": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "scriptrepository\n================\n\nThis is a public repository of users scripts for Mantid\n\nDirectory structure\n================\n\nIn order to try to keep the content in the repository navigable over time please follow the suggested directory structure\n\n* technique/instrument\t-\tScripts specific to an instrument\n e.g.sans/loq\n* technique/facility\t-\tscripts specific to a facility, but common to several instruments at that facility\n e.g.reflectometry/ornl\t\n* general/usage -\tscripts applicable to all\n e.g.general/events\n* user/name -\tfor storing personal, but still shared scripts \n e.g.user/ndraper\n \n", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "general/IgnoreInvalidData.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "import mantid algorithms, numpy and matplotlib\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "general/README.md": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "scriptrepository\n================\n\nThis is a public repository of users scripts for Mantid\n\nDirectory structure\n================\n\nIn order to try to keep the content in the repository navigable over time please follow the suggested directory structure\n\n* technique/instrument\t-\tScripts specific to an instrument\n e.g.sans/loq\n* technique/facility\t-\tscripts specific to a facility, but common to several instruments at that facility\n e.g.reflectometry/ornl\t\n* general/usage -\tscripts applicable to all\n e.g.general/events\n* user/name -\tfor storing personal, but still shared scripts \n e.g.user/ndraper\n \n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "general/Transforms": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "general/Transforms/Merging": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "general/Transforms/Merging/ConjoinSpectraNumAx.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "*WIKI* \n\nThis algorithm allows a single spectrum to be extracted from a range of workspaces and placed into a single workspace for comparison and plotting. The LabelUsing property allows you to control what the end labels applied to each spectra will be. The default is to use the source workspace name, but you can specify the name of a log value to use as the label, e.g. Temp_Sample. the LabelValue property allows control of how a single value is extracted from time series logs.\nModified from standard ConjoinSpectra to make the Y axis numeric and so allow Colour Fill and Contour plots of the resulting Workspace2D. (JSL)\n\n*WIKI*", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "scriptrepository\n================\n\nThis is a public repository of users scripts for Mantid\n\nDirectory structure\n================\n\nIn order to try to keep the content in the repository navigable over time please follow the suggested directory structure\n\n* technique/instrument\t-\tScripts specific to an instrument\n e.g.sans/loq\n* technique/facility\t-\tscripts specific to a facility, but common to several instruments at that facility\n e.g.reflectometry/ornl\t\n* general/usage -\tscripts applicable to all\n e.g.general/events\n* user/name -\tfor storing personal, but still shared scripts \n e.g.user/ndraper\n \n", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/Fabada.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/IRIS": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/IRIS/irisDiagnostics.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Plots heatmap of raw & normalised counts in each detector for a \n\nspecified run range to quickly identify dead detectors ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/ISIS": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/ISIS/Bayes": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/ISIS/Bayes/Quasi": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/ISIS/Bayes/Quasi/BayesQuasi.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "pylint: disable=invalid-name,too-many-instance-attributes,too-many-branches,no-init,redefined-builtin\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/ISIS/Bayes/Quasi/BayesStretch.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "pylint: disable=invalid-name,too-many-instance-attributes,too-many-branches,no-init\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/ISIS/Bayes/Quasi/Bayes_ubuntu.txt": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/ISIS/Bayes/Quasi/IndirectBayes.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "pylint: disable=invalid-name,too-many-arguments,too-many-locals\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/ISIS/Bayes/Quasi/IndirectImport.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Temporary solutions to the messy problem of importing F2Py libraries into\nthe Indirect scripts depending on platform and numpy package version.\n\nWe also deal with importing the mantidplot module outside of MantidPlot here.", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/ISIS/Bayes/Quasi/QLdata_lnx64.so": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/ISIS/Bayes/Quasi/QLres_lnx64.so": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/ISIS/Bayes/Quasi/QLse_lnx64.so": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/ISIS/Bayes/Quasi/Quest_lnx64.so": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/ISIS/Bayes/Water": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/ISIS/Bayes/Water/BayesWater.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "pylint: disable=invalid-name,too-many-instance-attributes,too-many-branches,no-init\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/ISIS/Bayes/Water/IndirectBayes.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Bayes routines \n\nFortran programs use fixed length arrays whereas Python has variable lenght lists\n\nInput : the Python list is padded to Fortrans length using procedure PadArray\n\nOutput : the Fortran numpy array is sliced to Python length using dataY = yout[:ny]\n\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/ISIS/IRIS_Parameters.xml": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/ISIS/OSIRIS_Parameters.xml": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/README.md": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "scriptrepository\n================\n\nThis is a public repository of users scripts for Mantid\n\nDirectory structure\n================\n\nIn order to try to keep the content in the repository navigable over time please follow the suggested directory structure\n\n* technique/instrument\t-\tScripts specific to an instrument\n e.g.sans/loq\n* technique/facility\t-\tscripts specific to a facility, but common to several instruments at that facility\n e.g.reflectometry/ornl\t\n* general/usage -\tscripts applicable to all\n e.g.general/events\n* user/name -\tfor storing personal, but still shared scripts \n e.g.user/ndraper\n \n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Fitting Models\n================\n\nPython scripts for fitting of with different QENS models\n\n* StretchedExpFT \nFourier transform of the stretched exponential. The model is: \nS(Q,E) = Convolution( A*Resolution, x*Delta + (1-x)*StretchedExFT ) + LinearBackground \nwith StretchedExFT = height * exp( - |t/tau|**beta )\n\n* StretchedExpFTBkgrd\nFourier transform of the stretched exponential plust a background file. The model is:\nS(Q,E) = Convolution( A*Resolution, x*Delta + (1-x)*StretchedExFT ) + LinearBackground + BackgroundFile \nwith StretchedExFT = height * exp( - |t/tau|**beta )\n\n* StretchedExpFTTauQ - as StretchedExpFT, but with a power-law dependence for the relaxation time. \nThe model is: \nConvolution( A*Resolution, x*Delta + (1-x)*StretchedExFTTauQ ) + LinearBackground \nwith StretchedExFTTauQ = height * exp( - |t/tau|**beta ) \nand tau = taumax*(Qmin/Q)**alpha\n\n* TeixeiraWaterSQE \nFitting of water at room temperature with an elastic component and the jump-diffusion\nmodel of Teixeira for translational diffusion. The model is: \nS(Q,E) = Convolution( Resolution, EISF*Delta + (1-EISF)*TeixeiraWater ) + LinearBackground\n \n", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/QENS_lib": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/QENS_lib/QENS_lib_demo.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "make fake data\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/QENS_lib/QENS_lib_install.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "run this in Mantid scripting window\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/README.md": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Fitting Models\n================\n\nPython scripts for fitting of with different QENS models\n\n* StretchedExpFT \nFourier transform of the stretched exponential. The model is: \nS(Q,E) = Convolution( A*Resolution, x*Delta + (1-x)*StretchedExFT ) + LinearBackground \nwith StretchedExFT = height * exp( - |t/tau|**beta )\n\n* StretchedExpFTBkgrd\nFourier transform of the stretched exponential plust a background file. The model is:\nS(Q,E) = Convolution( A*Resolution, x*Delta + (1-x)*StretchedExFT ) + LinearBackground + BackgroundFile \nwith StretchedExFT = height * exp( - |t/tau|**beta )\n\n* StretchedExpFTTauQ - as StretchedExpFT, but with a power-law dependence for the relaxation time. \nThe model is: \nConvolution( A*Resolution, x*Delta + (1-x)*StretchedExFTTauQ ) + LinearBackground \nwith StretchedExFTTauQ = height * exp( - |t/tau|**beta ) \nand tau = taumax*(Qmin/Q)**alpha\n\n* TeixeiraWaterSQE \nFitting of water at room temperature with an elastic component and the jump-diffusion\nmodel of Teixeira for translational diffusion. The model is: \nS(Q,E) = Convolution( Resolution, EISF*Delta + (1-EISF)*TeixeiraWater ) + LinearBackground\n \n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/data.dat": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/lmfit": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/lmfit/strexpft.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/resolution.dat": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/v3.6": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/v3.6/fitStretchedExFT.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Script to fit QENS data to a particular model\nThis script should be run in the \"Script Window\" of MantidPlot", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/v3.6/results_StretchedExpFT.dat": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/v3.7": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/v3.7/fitStretchedExFT.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Script to fit QENS data to a the Fourier trasnform of a stretched exponential\nThis script should be run in the \"Script Window\" of MantidPlot", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/v3.7/results_StretchedExpFT.dat": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/v3.8": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/v3.8.0": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/v3.8.0/__init__.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/v3.8.0/algFitStretchedExpFT.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "For problems with this algorithm, please either write a:\n- post in the Mantid forum \n- message in the \"Contact us\" page \n- email to ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/v3.8.0/gloFitStretchedExFT.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "For problems with this script, please either write a:\n- post in the Mantid forum \n- message in the \"Contact us\" page \n- email to \n\nScript to global fit of QENS data to the Fourier transform of a stretched exponential\nThis script should be run in the \"Script Window\" of MantidPlot\nGlobal parameter: beta exponent in the stretched exponential\n\nFitting model. In this case:\n Convolution( A*Resolution, x*Delta + (1-x)*StretchedExFT ) + LinearBackground\n with 0\n- message in the \"Contact us\" page \n- email to ", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/v3.8/algorithm_version/resolution.dat": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/v3.8/algorithm_version/sample.dat": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/v3.8/algorithm_version/seqFitStretchedExFT.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/v3.8/scripts_only": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/v3.8/scripts_only/__init__.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFT/v3.8/scripts_only/seqFitStretchedExFT.pyc": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFTBkgrd": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFTBkgrd/background.grp": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFTBkgrd/data.grp": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFTBkgrd/resolution.grp": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFTBkgrd/v3.8": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFTBkgrd/v3.8/__init__.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFTBkgrd/v3.8/gloFitStretchedExFTBkgrd.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "For problems with this script, please either write a:\n- post in the Mantid forum \n- message in the \"Contact us\" page \n- email to \n\nScript to global fit of QENS data to the Fourier transform of a stretched exponential\nThis script should be run in the \"Script Window\" of MantidPlot\nGlobal parameter: beta exponent in the stretched exponential\n\nFitting model. In this case:\n Convolution( Resolution, A*Delta + B*StretchedExFT ) + LinearBackground + BackgroundFile\n( the EISF is later computed as =A/(A+B) )\n\nParameter Beta of fit function StretchedExFT is the same for all spectra. All other fitting\nparameters are different for each spectrum", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFTBkgrd/v3.8/seqFitStretchedExFTBkgrd.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": " For problems with this script, please either write a:\n - post in the Mantid forum \n - message in the \"Contact us\" page \n - email to \n\nScript to sequential fit of QENS data to a the Fourier trasnform of a stretched exponential\nThis script should be run in the \"Script Window\" of MantidPlot", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFTTauQ": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFTTauQ/data.dat": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFTTauQ/resolution.dat": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFTTauQ/results_StretchedExpFTTauQ.dat": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFTTauQ/v3.8": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFTTauQ/v3.8/StretchedExpFTTauQ.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFTTauQ/v3.8/__init__.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/StretchedExpFTTauQ/v3.8/gloFitStretchedExFTTauQ.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "For problems with this script, please either write a:\n- post in the Mantid forum \n- message in the \"Contact us\" page \n- email to \n\n Script to global fit of QENS data to the Fourier transform of a stretched exponential\n This script should be run in the \"Script Window\" of MantidPlot\n\n Fitting model. In this case:\n Convolution( A*Resolution, EISF*Delta + (1-EISF)*StretchedExFTTauQ ) + LinearBackground\n with 0\n - message in the \"Contact us\" page \n - email to \n\nSequential fit of QENS data to the Fourier trasnform of a stretched exponential\n Relaxation time follows a power-law: tau = taumax * (Qmin/Q)**alpha\n This script should be run in the \"Script Window\" of MantidPlot", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/TeixeiraWaterSQE": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/TeixeiraWaterSQE/irs26173_graphite_res.nxs": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/TeixeiraWaterSQE/irs26176_graphite002_red.nxs": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/TeixeiraWaterSQE/v3.9": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/TeixeiraWaterSQE/v3.9/__init__.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "indirect_inelastic/models/TeixeiraWaterSQE/v3.9/algTeixeiraWaterFit.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "For problems with this algorithm, please either write a:\n- post in the Mantid forum \n- message in the \"Contact us\" page \n- email to \n\nAlgorithm to global fit of QENS data to the jump-diffusion model by Teixeira\nFitting model. In this case:\n Convolution( A*Resolution, x*Delta + (1-x)*TeixeiraWaterSQE ) + LinearBackground\n with 0\n- message in the \"Contact us\" page \n- email to \n\nScript to global fit of QENS data to the jump-diffusion model by Teixeira\nThis script should be run in the \"Script Window\" of MantidPlot\n\nFitting model. In this case:\n Convolution( A*Resolution, x*Delta + (1-x)*TeixeiraWaterSQE ) + LinearBackground\n with 0\n\n How to cite: Scatigno, Claudia, et al. \"A python algorithm to analyze inelastic neutron scattering spectra based on the y-scale formalism.\" Journal of Chemical Theory and Computation 16.12 (2020): 7671-7680\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/ClaudiaScatigno/INSCorNorm_CS_2020_def.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "INSCorNorm (PythonAlgorithm) Author: Claudia Scatigno \n\n How to cite: Scatigno, Claudia, et al. \"A python algorithm to analyze inelastic neutron scattering spectra based on the y-scale formalism.\" Journal of Chemical Theory and Computation 16.12 (2020): 7671-7680\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/ClaudiaScatigno/INSCorrNorm__v17_02122022.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "INSCorNorm (PythonAlgorithm) Author: Claudia Scatigno \n\nto cite: Scatigno, Claudia, et al. \"A python algorithm to analyze inelastic neutron scattering spectra based on the y-scale formalism.\" Journal of Chemical Theory and Computation 16.12 (2020): 7671-7680\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/Daniel": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/Daniel.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "import mantid algorithms, numpy and matplotlib\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/Daniel/test script.py": { "author": null, "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/DannyHindson": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/DannyHindson/SimpleMtdCommands_Example.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "\n\n Example: Basic Mantid commands\n\n\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/ExampleUser": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/ExampleUser/HRPDDialog_Example.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "First a function definition for the Loading algorithms which loads\n\nthe data and immediately aligns the detectors\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/ExampleUser/InstrumentView_Example.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "\n\n Example: Instrument view control\n\n\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/ExampleUser/PlotAsymmetryByLogValue_Example.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "-----------------------------------------------------\n\n Runs PlotAssymetryByLogValue algorithm\n\n and plots the output in MantidPlot using a Python\n\n dictionary\n\n-----------------------------------------------------\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/ExampleUser/SampleLogs_Demo.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "\n\n Example: Retrieving log information from a data set\n\n\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/ExampleUser/SimpleMtdCommands_Example.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "\n\n Example: Basic Mantid commands\n\n\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/ExampleUser/SolidAngle_Example.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "-------------------------------------------------------------------------\n\n\n\n Example: Calculating the solid angle for a spectrum with respect to the \n\n sample position\n\n\n\n-------------------------------------------------------------------------\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/ExampleUser/StripPeaks.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "MantidPlot example script\n\n\nUsing StripPeaks + dialog boxes\n\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/ExampleUser/TableWorkspace_Example.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Perform some algorithms\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/ExampleUser/test_upload.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Intended to be used for testing upload mechanism\n\nThis is a full summary of the module", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/Gemma": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/Gemma/test_script2.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/GesnerPassos": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "This folder belongs to Gesner Passos.\n\nIt is here to allow developing features for ScriptRepository and testing \nthem. \n\n\nchecking old api: \n\ngrep mtd.initialize *\ngrep MantidFramework *\ngrep mtd.sendLogMessage * \ngrep mtd.deleteWorkspace * \ngrep mtd.settings * \ngrep mtd.getSettings * \ngrep mtd.workspaceExists * \ngrep mtd.getConfigProperty * \ngrep isGroup * \ngrep getSampleDetails * \ngrep createNumericAxis * \ngrep createTextAxis * \ngrep createSpectraAxis * \ngrep '.workspace()' * \ngrep qti * \n\n\n#python to find the algorithms used in scripts\n\nimport numpy\nimport re\n\n#f = type(globals()['Load'])\n#all_algs = [k for (k,v) in globals().items() if isinstance(v,f)]\nlist_of = ['reduce_from_autoreduce_script.py', 'reduce_mult_T.py', 'reducenoguess.py', 'scan.py', 'sum_split_plot_slice.py' ]\nfor name in list_of:\n\tfil = open('/apps/scriptrepository/direct inelastic/SNS/%s'%name,'r')\n\tprint fil\n\tfor line in fil:\n\t\tres = numpy.intersect1d(all_algs, re.split('\\W+', line))\n\t\tif len(res):\n\t\t\tprint line\n\n\n\nMigrating scriptrepository\n/diffraction\n\nNOTHING\n\n-==================-\n\n\n/direct inelastic - verified\n\nISIS/\n\nTicket to assign alex: \n\n\nRemove the 'txt' files that are not used anymore\nlet.txt maps.txt mari.txt merlin.txt\n\nCopy all the files from:\n\nhttps://github.com/mantidproject/scripts/tree/master/inelastic/direct_geometry/qtiGenie\n\nand put them into script repository: \n\nhttps://github.com/mantidproject/scriptrepository/tree/master/direct%20inelastic/ISIS/qtiGenie\n\n\n\n\nticket to assign to me:\n\nUpgrage the scripts inside https://github.com/mantidproject/scripts/tree/master/inelastic/direct_geometry/qtiGenie\nto the new API. \n\n\nSNS/ \nall using new api\n\n-==================-\n\n\ngeneral/Transforms/Merging/ConjoinSpectraNumAx.py\n\nneed to be migrated\n\n\n-==================-\n\n\nindirect inelastic\n\nNOTHING\n\n-==================-\n\n\nreflectometry/offspec\n\nremoved from 7522 (investigate)\n\nTested with:\n#addRuns(['7709','7709'],'out')\n#addRuns(['7709'],'single')\n#plot2D('single, out',[0,10000,0,10000,0,1000], [0,0,0])\n#XYPlot('single, out','2,3',[0,10000,0,10000,0,1000], [2,2,2], True,True)\n#nrtestfn('7709, 7709','out, out2')\n#removeoutlayer('out')\n\n\nbinning=[\"2.0\",\"0.2\",\"12.0\",\"2\"]\nconfig[\"default.instrument\"] = \"OFFSPEC\"\nnrSESANSP0Fn(\"10792\",\"P055\",\"109\",\"119\",\"2\",\"1\",binning)\nnrSESANSFn(\"10791+10793\",\"dPMMA\",\"\",\"P055pol\",\n \"100\",\"130\",\"2\",\"1\",\"2\",\"3009.9\",binning,\"2\",\"0\")\n\t\t\t \n\t\t\t \nbinning=[\"2.0\",\"0.2\",\"12.0\",\"2\"]\nconfig[\"default.instrument\"] = \"OFFSPEC\"\nnrSESANSP0Fn(\"10792\",\"P055\",\"109\",\"119\",\"2\",\"1\",binning)\n\n\n+++++++++++++++++++++++++Send the user the new file and ask him to test it!++++++++++++++++++++++++++++++++++\n\n\n\n-==================-\nuser/ExampleUser\n\nSimpleMtdCommands_Example.py\nStripPeaks.py\nTableWorkspace_Example.py\nSampleLogs_Demo.py\n\n\n\n\n========================\n#! /usr/bin/env python\nfrom mantidsimple import *\nfrom MantidFramework import *\n\nf = type(globals()['LoadRaw'])\nall_algs = [k for (k,v) in globals().items() if isinstance(v,f)]\n\nimport sys\nimport numpy\nimport re\n\n\nfor file_n in sys.argv[1:]:\n print \"\\n\\n===================================\"\n\tprint file_n\n #python to find the algorithms used in scripts\n \n\tfil = open(file_n ,'r')\n\tfor line in fil:\n\t\tres = numpy.intersect1d(all_algs, re.split('\\W+', line))\n\t\tif len(res):\n\t\t\tprint line\n fil.close()\n\n\n=============================\negrep \"mantidsimple|mtd\\.initialize|MantidFramework|mtd\\.sendLogMessage|mtd\\.deleteWorkspace|mtd\\.settings|mtd\\.getSettings|mtd\\.workspaceExists|mtd\\.getConfigProperty|isGroup|getSampleDetails|createNumericAxis|createTextAxis|createSpectraAxis|\\.workspace\\(\\)|qti\" $1\nif [[ $? == '0' ]];then\necho \"============== \" $1 \" =================\"\nfi;", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/GesnerPassos/README": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "This folder belongs to Gesner Passos.\n\nIt is here to allow developing features for ScriptRepository and testing \nthem. \n\n\nchecking old api: \n\ngrep mtd.initialize *\ngrep MantidFramework *\ngrep mtd.sendLogMessage * \ngrep mtd.deleteWorkspace * \ngrep mtd.settings * \ngrep mtd.getSettings * \ngrep mtd.workspaceExists * \ngrep mtd.getConfigProperty * \ngrep isGroup * \ngrep getSampleDetails * \ngrep createNumericAxis * \ngrep createTextAxis * \ngrep createSpectraAxis * \ngrep '.workspace()' * \ngrep qti * \n\n\n#python to find the algorithms used in scripts\n\nimport numpy\nimport re\n\n#f = type(globals()['Load'])\n#all_algs = [k for (k,v) in globals().items() if isinstance(v,f)]\nlist_of = ['reduce_from_autoreduce_script.py', 'reduce_mult_T.py', 'reducenoguess.py', 'scan.py', 'sum_split_plot_slice.py' ]\nfor name in list_of:\n\tfil = open('/apps/scriptrepository/direct inelastic/SNS/%s'%name,'r')\n\tprint fil\n\tfor line in fil:\n\t\tres = numpy.intersect1d(all_algs, re.split('\\W+', line))\n\t\tif len(res):\n\t\t\tprint line\n\n\n\nMigrating scriptrepository\n/diffraction\n\nNOTHING\n\n-==================-\n\n\n/direct inelastic - verified\n\nISIS/\n\nTicket to assign alex: \n\n\nRemove the 'txt' files that are not used anymore\nlet.txt maps.txt mari.txt merlin.txt\n\nCopy all the files from:\n\nhttps://github.com/mantidproject/scripts/tree/master/inelastic/direct_geometry/qtiGenie\n\nand put them into script repository: \n\nhttps://github.com/mantidproject/scriptrepository/tree/master/direct%20inelastic/ISIS/qtiGenie\n\n\n\n\nticket to assign to me:\n\nUpgrage the scripts inside https://github.com/mantidproject/scripts/tree/master/inelastic/direct_geometry/qtiGenie\nto the new API. \n\n\nSNS/ \nall using new api\n\n-==================-\n\n\ngeneral/Transforms/Merging/ConjoinSpectraNumAx.py\n\nneed to be migrated\n\n\n-==================-\n\n\nindirect inelastic\n\nNOTHING\n\n-==================-\n\n\nreflectometry/offspec\n\nremoved from 7522 (investigate)\n\nTested with:\n#addRuns(['7709','7709'],'out')\n#addRuns(['7709'],'single')\n#plot2D('single, out',[0,10000,0,10000,0,1000], [0,0,0])\n#XYPlot('single, out','2,3',[0,10000,0,10000,0,1000], [2,2,2], True,True)\n#nrtestfn('7709, 7709','out, out2')\n#removeoutlayer('out')\n\n\nbinning=[\"2.0\",\"0.2\",\"12.0\",\"2\"]\nconfig[\"default.instrument\"] = \"OFFSPEC\"\nnrSESANSP0Fn(\"10792\",\"P055\",\"109\",\"119\",\"2\",\"1\",binning)\nnrSESANSFn(\"10791+10793\",\"dPMMA\",\"\",\"P055pol\",\n \"100\",\"130\",\"2\",\"1\",\"2\",\"3009.9\",binning,\"2\",\"0\")\n\t\t\t \n\t\t\t \nbinning=[\"2.0\",\"0.2\",\"12.0\",\"2\"]\nconfig[\"default.instrument\"] = \"OFFSPEC\"\nnrSESANSP0Fn(\"10792\",\"P055\",\"109\",\"119\",\"2\",\"1\",binning)\n\n\n+++++++++++++++++++++++++Send the user the new file and ask him to test it!++++++++++++++++++++++++++++++++++\n\n\n\n-==================-\nuser/ExampleUser\n\nSimpleMtdCommands_Example.py\nStripPeaks.py\nTableWorkspace_Example.py\nSampleLogs_Demo.py\n\n\n\n\n========================\n#! /usr/bin/env python\nfrom mantidsimple import *\nfrom MantidFramework import *\n\nf = type(globals()['LoadRaw'])\nall_algs = [k for (k,v) in globals().items() if isinstance(v,f)]\n\nimport sys\nimport numpy\nimport re\n\n\nfor file_n in sys.argv[1:]:\n print \"\\n\\n===================================\"\n\tprint file_n\n #python to find the algorithms used in scripts\n \n\tfil = open(file_n ,'r')\n\tfor line in fil:\n\t\tres = numpy.intersect1d(all_algs, re.split('\\W+', line))\n\t\tif len(res):\n\t\t\tprint line\n fil.close()\n\n\n=============================\negrep \"mantidsimple|mtd\\.initialize|MantidFramework|mtd\\.sendLogMessage|mtd\\.deleteWorkspace|mtd\\.settings|mtd\\.getSettings|mtd\\.workspaceExists|mtd\\.getConfigProperty|isGroup|getSampleDetails|createNumericAxis|createTextAxis|createSpectraAxis|\\.workspace\\(\\)|qti\" $1\nif [[ $? == '0' ]];then\necho \"============== \" $1 \" =================\"\nfi;", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/GesnerPassos/larmor_reduction.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/HarrietBrown": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/HarrietBrown/test_plotter_script.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "This is a script that produces a 2x2 figure containing sinusoidal waveforms, \n\ntwo of which have error bars. this is another bit of doc rext to see if it updates\n\ntesting autoupdate\n\nAnother change so it belongs to me\n\nMake another change", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/MartynGigg": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/MartynGigg/can-see-this.md": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/MialFolder": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/MialFolder/test_upload.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Intended to be used for testing upload mechanism\n\nThis is a full summary of the module", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/NickDraper": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/NickDraper/test script 2 copy.py": { "author": null, "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/NickDraper/test script 2.py": { "author": null, "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/NickDraper/test script.py": { "author": null, "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/OwenArnold": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/OwenArnold/smooth_script.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Some useful comments\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/Polarisation": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/Polarisation/GUI": { "description": "", "directory": true, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/Polarisation/GUI/FunctionalMAGGOT.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/Polarisation/GUI/MAGGOT.py": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "Script used to start the MAGGOT GUI from MantidPlot", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/Polarisation/Optimum time calculator.py": { "author": null, "description": "Optimum Time calculator\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/Polarisation/Polariser Polarisation.py": { "author": null, "description": "8893-8974\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/Polarisation/Simultaneous Polariser Analyser Calculator.py": { "author": null, "description": "Opacity value needs to be changed in function for different cells\n\nThe mask applies to direct transmission on LET\n\nerror reduced by having a greater difference in polarisation to the calibration file-\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/Polarisation/neutron polarisation due to polariser direct transmission.py": { "author": null, "description": "8922 DEPOLARISED\n\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" }, "user/README.md": { - "author": "RichardWaiteSTFC", + "author": "Waruna Priyankara J A Wickramasingha", "description": "scriptrepository\n================\n\nThis is a public repository of users scripts for Mantid\n\nDirectory structure\n================\n\nIn order to try to keep the content in the repository navigable over time please follow the suggested directory structure\n\n* technique/instrument\t-\tScripts specific to an instrument\n e.g.sans/loq\n* technique/facility\t-\tscripts specific to a facility, but common to several instruments at that facility\n e.g.reflectometry/ornl\t\n* general/usage -\tscripts applicable to all\n e.g.general/events\n* user/name -\tfor storing personal, but still shared scripts \n e.g.user/ndraper\n e.g.user/gesner\n", "directory": false, - "pub_date": "2024-Sep-11 08:07:47" + "pub_date": "2024-Nov-08 10:26:39" } } \ No newline at end of file